LogoMat-M

Archive page. This resource is no longer available at the Sanger Institute.

Overview

Profile Hidden Markov Models (pHMMs) are a widely used tool for protein family research.

We present a method to visualise all of their central aspects graphically, thus generalising the concept of sequence logos introduced by Schneider and Stephens.

Download and Installation

HMM Logo web server "LogoMat-M" was created and maintained by Benjamin Schuster-Böckler

The logo server has been superseded by a unified alignment and HMM logo server.

Contact

Please contact webmaster for further assistance.

Tool type