Profile Hidden Markov Models (pHMMs) are a widely used tool for protein family research.
We present a method to visualise all of their central aspects graphically, thus generalising the concept of sequence logos introduced by Schneider and Stephens.
Download and Installation
HMM Logo web server "LogoMat-M" was created and maintained by Benjamin Schuster-Böckler
The logo server has been superseded by a unified alignment and HMM logo server.
Please contact webmaster for further assistance.