BamView

BamView

BamView

Overview

An interactive Java application for visualising read-alignment data stored in BAM files.

Download and Installation

Please see our SourceForge page for download and installation instructions.

Learn and Support

For more information and advice on using this software please see the BamView SourceForge page.

License and Citation

BamView is available under GPL3.

If you make use of this software in your research, please cite as:

BamView: viewing mapped read alignment data in the context of the reference sequence.

Carver T, Böhme U, Otto TD, Parkhill J and Berriman M

Bioinformatics (Oxford, England) 2010;26;5;676-7
PUBMED: 20071372; PMC: 2828118; DOI: 10.1093/bioinformatics/btq010

Contact

If you need help or have any queries, please contact us using the details below.

Our normal office hours are 8:30-17:00 (GMT) Monday to Friday.

Publications

  • BamView: visualizing and interpretation of next-generation sequencing read alignments.

    Carver T, Harris SR, Otto TD, Berriman M, Parkhill J and McQuillan JA

    Briefings in bioinformatics 2013;14;2;203-12

  • BamView: viewing mapped read alignment data in the context of the reference sequence.

    Carver T, Böhme U, Otto TD, Parkhill J and Berriman M

    Bioinformatics (Oxford, England) 2010;26;5;676-7