Sanger Institute, Genome Research Limited
Sequencescape is a LIMS written in Ruby on Rails and is currently used to support the Library, Sequencing and Genotyping pipelines in DNA Pipelines. It also provides administrative support for accessioning Samples and Studies at the external archives (e.g. ENA & EGA).It is available on github.
We work closely with PSD as their systems provide us with all the LIMS information required to run our analysis pipelines and services.
SAM contributes to various software packages for processing DNA sequence data, including samtools, htslib, biobambam and the Staden package. We also submit raw sequencing data to the EBI on behalf of the research groups.