The latest and greatest stuff from R&D often requires custom analysis or changes to our pipelines and services.
HPA has created tools which are essential components of NPG's current analysis pipelines and leads on developing and testing software for using some of the potential next generation of production sequencing technologies. HPA, in its role of creating custom assemblies, is also a consumer of NPG's data products.
Human Genetics Informatics (HGI) supports the scientific aims of the Human Genetics programme by developing and operating computational analysis workflows, managing shared storage, and providing bioinformatics software tools for the use of researchers across all Human Genetics faculty groups.
NPG are reliant on the Sanger systems teams for providing solid compute and storage.
NPG provide interfaces for sequencing run creation and sequencing run QC to the operations teams. We also provide training and advice to the operations team members who perform manual QC.
We work closely with PSD as their systems provide us with all the LIMS information required to run our analysis pipelines and services.
The SAM team is responsible for archival of the data produced by NPG to external repositories, typically the EGA, ENA or ArrayExpress at the EBI. They also create and maintain tools which are essential components of our analysis pipelines.