GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study link novel loci to endometriosis.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
A1L2A0_DANRE ITPK1 ENSDARG00000070583 4 Not determined 3
CSMD1 CSMD1 ENSDARG00000058353 3 Not determined 12
id4 ID4 ENSDARG00000045131 None Not determined 3
itpk1 ITPK1 ENSDARG00000013056 3 Not determined 3
PDE1C (2 of 2) PDE1C ENSDARG00000067683 3 Not determined 2
PDE1C (1 of 2) PDE1C ENSDARG00000012490 3 Not determined 2
si:ch211-240j18.3 KSR2 ENSDARG00000094526 None Not determined 3
si:ch211-95o16.2 VEZT ENSDARG00000075215 2 Not determined 2
SORCS1 SORCS1 ENSDARG00000076333 6 Not determined 1
wnt4a WNT4 ENSDARG00000071208 1 Not determined 6
wnt4b WNT4 ENSDARG00000040159 None Not determined 6
ZBTB40 ZBTB40 ENSDARG00000091762 6 Not determined 5

The following reported genes could not be linked automatically to a zebrafish gene:

  • HNRNPA3P1
  • IL33
  • LOC100128304
  • LOC100130539
  • LOC100287015
  • LOC100289113
  • MOAP1
  • OR1D2
  • OR1G1
  • RBM43
  • RND3
  • RNF144B
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