GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
adamts13 ADAMTS13 ENSDARG00000076270 2 Not determined 3
adipoql ADIPOQ ENSDARG00000056411 2 Not determined 7
adipoql2 ADIPOQ ENSDARG00000062228 None Not determined 7
ahsg AHSG ENSDARG00000026764 1 Not determined 1
dbn1 DBN1 ENSDARG00000069113 2 Not determined 1
edem2 EDEM2 ENSDARG00000028448 3 Normal 3
f5 F5 ENSDARG00000055705 9 Not determined 7
f7 F7 ENSDARG00000034862 None Not determined 2
f7i F7 ENSDARG00000075827 1 Not determined 2
fetub FETUB ENSDARG00000053973 1 Not determined 1
fgfr4 FGFR4 ENSDARG00000069105 5 Not determined 1
grk5 GRK6 ENSDARG00000032801 None Not determined 3
kng1 KNG1 ENSDARG00000022372 None Not determined 3
lman2 LMAN2 ENSDARG00000061854 1 Not determined 2
LOC100329340 SLC34A1 ENSDARG00000028824 None Not determined 3
LOC100332160 UIMC1 ENSDARG00000091187 None Not determined 3
LOC100333889 C9orf7 ENSDARG00000090818 None Not determined 1
LOC561288 GRK6 ENSDARG00000032157 1 Not determined 3
LOC565599 SLC34A1 ENSDARG00000054658 None Not determined 3
mxd3 MXD3 ENSDARG00000057432 None Not determined 2
myh7b MYH7B ENSDARG00000076075 5 Not determined 2
MYH7B (3 of 3) MYH7B ENSDARG00000094982 None Not determined 2
myh7bb MYH7B ENSDARG00000035322 None Not determined 2
prelid1 PRELID1 ENSDARG00000057423 2 Not determined 1
PRR7 PRR7 ENSDARG00000089800 None Not determined 2
rfc4 RFC4 ENSDARG00000042458 None Not determined 1
RFC4 (1 of 2) RFC4 ENSDARG00000090651 None Not determined 1
RGS14 (1 of 2) RGS14 ENSDARG00000060200 None Not determined 5
rgs14a RGS14 ENSDARG00000021521 None Not determined 5
si:ch211-260g14.4 SELP ENSDARG00000042138 5 Not determined 4
si:ch211-260g14.8 SELP ENSDARG00000009123 3 Not determined 4
si:ch211-262h13.5 FETUB ENSDARG00000070892 2 Not determined 1
si:ch211-284e20.8 FETUB ENSDARG00000070918 1 Not determined 1
si:ch73-252g14.4 AHSG ENSDARG00000069293 3 Not determined 1
si:dkey-220o5.1 GRK6 ENSDARG00000078815 2 Not determined 3
si:dkey-40c11.2 DBN1 ENSDARG00000032482 3 Not determined 1
si:dkey-4c23.8 HRG ENSDARG00000094960 None Not determined 2
surf4 SURF4 ENSDARG00000002702 None Not determined 1
surf4l SURF4 ENSDARG00000035131 None Not determined 1
trpc4apa TRPC4AP ENSDARG00000018840 1 Not determined 1
UIMC1 (2 of 2) UIMC1 ENSDARG00000089679 None Not determined 3
zgc:101084 SURF2 ENSDARG00000037182 None Not determined 1
zgc:112317 PRELID1 ENSDARG00000044169 1 Not determined 1
zgc:163025 F7 ENSDARG00000076045 2 Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • ABO
  • AGBL1
  • C6orf10
  • F11
  • F11
  • F12
  • LOC653163
  • NSD1
  • PROCR
* quick link - http://q.sanger.ac.uk/o5a9309b