GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
apoa1 APOA5 ENSDARG00000012076 1 Not determined 22
apoa4 APOA5 ENSDARG00000040298 1 Not determined 22
braf BRAF ENSDARG00000017661 4 Not determined 1
CD44 (1 of 2) CD44 ENSDARG00000089892 None Not determined 4
gnb3a GNB3 ENSDARG00000004358 2 Not determined 1
gnb3b GNB3 ENSDARG00000002696 2 Not determined 1
leprel2 LEPREL2 ENSDARG00000057879 None Not determined 1
si:ch211-225b11.1 SLC6A1 ENSDARG00000002405 None Not determined 2
si:ch211-283g2.1 SLC6A1 ENSDARG00000046091 1 Not determined 2
si:dkey-164m14.1 SLC6A1 ENSDARG00000041205 None Not determined 2
si:dkey-7f3.15 APOA5 ENSDARG00000094929 None Not determined 22
si:dkeyp-69c1.6 BUD13 ENSDARG00000006666 2 Not determined 8
SIK3 SIK3 ENSDARG00000088083 1 Not determined 1
wu:fa99e04 CD44 ENSDARG00000087863 1 Not determined 4
zgc:100920 NKAIN3 ENSDARG00000042961 1 Not determined 1
zgc:103663 SLC6A1 ENSDARG00000039647 1 Not determined 2
zgc:112992 APOA5 ENSDARG00000086281 None Not determined 22
zgc:136569 SLC6A1 ENSDARG00000045944 2 Not determined 2
zgc:162915 CYP4F2 ENSDARG00000053530 None Not determined 6
zgc:194131 APOA5 ENSDARG00000020866 2 Not determined 22
znf259 ZNF259 ENSDARG00000043542 1 Not determined 11

The following reported genes could not be linked automatically to a zebrafish gene:

  • CD4
  • LOC100128347
  • LOC729645
* quick link - http://q.sanger.ac.uk/byjlgezf