GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
abcb9 ABCB9 ENSDARG00000056200 1 Not determined 1
chrm3a CHRM3 ENSDARG00000071091 None Not determined 4
cpne4 CPNE4 ENSDARG00000062754 2 Not determined 2
dpyd DPYD ENSDARG00000010267 1 Not determined 3
DPYD (4 of 5) DPYD ENSDARG00000086853 None Not determined 3
DPYD (3 of 5) DPYD ENSDARG00000086464 None Not determined 3
DPYD (2 of 5) DPYD ENSDARG00000089675 1 Not determined 3
dscam DSCAM ENSDARG00000024865 7 Not determined 3
fggy FGGY ENSDARG00000038667 None Not determined 3
kidins220a KIDINS220 ENSDARG00000031240 6 Not determined 1
kidins220b KIDINS220 ENSDARG00000017338 1 Not determined 1
LOC100149598 CHRM3 ENSDARG00000071298 None Not determined 4
nfyc NFYC ENSDARG00000070151 None Not determined 1
PDGFD PDGFD ENSDARG00000077677 2 Not determined 3
PITPNM2 PITPNM2 ENSDARG00000041100 5 Not determined 1
plcl1 PLCL1 ENSDARG00000067676 2 Not determined 7
psd3l PSD3 ENSDARG00000053210 1 Not determined 2
rsl24d1 RSL24D1 ENSDARG00000040439 None Not determined 1
si:ch211-69g13.1 DSCAM ENSDARG00000028118 4 Not determined 3
si:dkey-11p23.1 CPNE4 ENSDARG00000040069 None Not determined 2
tgfa TGFA ENSDARG00000053939 None Not determined 3
vrk1 VRK1 ENSDARG00000018006 1 Not determined 1
zgc:103502 CCND3 ENSDARG00000027391 None Not determined 6
zgc:153505 DPYD ENSDARG00000071482 None Not determined 3
zgc:55363 AC130454.2 ENSDARG00000025788 None Not determined 1
zgc:77395 EEPD1 ENSDARG00000071116 None Not determined 2

The following reported genes could not be linked automatically to a zebrafish gene:

  • AC007425.1
  • AC008620.2
  • AC078918.1
  • AC092661.1
  • AC105105.1
  • AC109592.1
  • AC130454.1
  • AL133264.1
  • AL139020.1
  • AL161904.1
  • AL353790.1
  • DARC
  • NEIL2
  • RP11-337N19.1
  • RP11-440G9.1
  • RP11-48B3.1
  • RP11-696F10.1
  • RP3-369A17.4
  • RPSAP47
* quick link - http://q.sanger.ac.uk/8qe4r69a