GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

A genome-wide association study of the metabolic syndrome in Indian Asian men.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
cetp CETP ENSDARG00000030872 2 Not determined 27
crtac1 CRTAC1 ENSDARG00000059826 1 Not determined 1
dyrk1aa DYRK1A ENSDARG00000063570 3 Not determined 2
dyrk1ab DYRK1A ENSDARG00000023814 2 Not determined 2
ENG ENG ENSDARG00000088795 3 Not determined 1
ercc4 ERCC4 ENSDARG00000014161 5 Normal 3
fads2 FADS2 ENSDARG00000019532 None Not determined 15
git2a GIT2 ENSDARG00000061915 2 Not determined 2
git2b GIT2 ENSDARG00000042791 2 Not determined 2
gltpa GLTP ENSDARG00000061921 None Not determined 1
gltpb GLTP ENSDARG00000077962 None Not determined 1
herpud1 HERPUD1 ENSDARG00000024314 1 Not determined 3
LOC100331214 LPL ENSDARG00000034667 None Not determined 21
LOC100332594 ZNF644 ENSDARG00000052254 4 Not determined 1
lpl LPL ENSDARG00000087697 1 Not determined 21
LPL (1 of 2) LPL ENSDARG00000091659 2 Not determined 21
si:dkey-51p7.1 CRTAC1 ENSDARG00000075394 3 Normal 1
stoml3 STOML3 ENSDARG00000079914 2 Not determined 1
tcf7l2 TCF7L2 ENSDARG00000004415 5 Not determined 23
zgc:110200 STOML3 ENSDARG00000057035 2 Not determined 1
zgc:112408 STOML3 ENSDARG00000016207 2 Not determined 1
zgc:163016 PKMYT1 ENSDARG00000074730 1 Not determined 1
zgc:73269 C11orf10 ENSDARG00000078785 None Not determined 4
znf644 ZNF644 ENSDARG00000068920 4 Not determined 1

The following reported genes could not be linked automatically to a zebrafish gene:

  • FADS1
  • FLJ41733
  • PMAIP1
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