GWAS

(GWAS data used on the Zebrafish Mutation Project Web site comes from http://www.genome.gov/gwastudies/.)

Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.

The human homologues of the following genes have been identified in this study:

Gene name Reported Gene Ensembl ID Alleles found Associated phenotype Study Count
ASTN2 (3 of 3) ASTN2 ENSDARG00000090831 None Not determined 9
ASTN2 (2 of 3) ASTN2 ENSDARG00000086640 None Not determined 9
ASTN2 (1 of 3) ASTN2 ENSDARG00000089410 1 Not determined 9
cdh5 CDH13 ENSDARG00000075549 5 Not determined 15
gpr98 GPR98 ENSDARG00000021137 14 Not determined 3
GPR98 (2 of 2) GPR98 ENSDARG00000089584 None Not determined 3
KIRREL3 (2 of 3) KIRREL3 ENSDARG00000086919 None Not determined 4
kirrel3a KIRREL3 ENSDARG00000075806 1 Not determined 4
kirrel3l KIRREL3 ENSDARG00000019473 None Not determined 4
LOC100005485 ATF7IP2 ENSDARG00000089698 None Not determined 1
LOC100331387 PRKAR2B ENSDARG00000036446 None Not determined 2
LOC572369 KIRREL3 ENSDARG00000060939 3 Not determined 4
MEIS2 (2 of 2) MEIS2 ENSDARG00000091279 None Not determined 2
meis2.1 MEIS2 ENSDARG00000077840 2 Not determined 2
meis2.2 MEIS2 ENSDARG00000042361 None Not determined 2
meis3 MEIS2 ENSDARG00000002795 None Not determined 2
pparda PPARD ENSDARG00000044525 1 Not determined 3
ppardb PPARD ENSDARG00000009473 1 Not determined 3
rnf144aa RNF144A ENSDARG00000020600 None Not determined 1
rnf144ab RNF144A ENSDARG00000042557 None Not determined 1
si:ch211-122a20.1 CDH13 ENSDARG00000014215 1 Not determined 15
si:ch211-137a8.2 CLMN ENSDARG00000068926 3 Normal 4
si:ch211-209d1.1 FHOD3 ENSDARG00000061904 3 Not determined 2
si:dkey-263h23.7 FHOD3 ENSDARG00000063682 4 Not determined 2
sox5 SOX5 ENSDARG00000011582 2 Not determined 6
zgc:100997 CLMN ENSDARG00000043667 1 Not determined 4

The following reported genes could not be linked automatically to a zebrafish gene:

  • LOC729993
* quick link - http://q.sanger.ac.uk/ohhu96my