<=>End overlap alignment

Alignment #1 HSP: 550 bps / non-identical: 50 bps

Full alignment

  AP000432.4	17179	GGGAGCTAGCAAGTTCGAAATCTACAGGGCAAGCTGGCAGGCTGGTAACT	17228
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	550	GGGAGCTAGCAAGTTCGAAATCTACAGGGCAAGCTGGCAGGCTGGTAACT	501

  AP000432.4	17229	CAGGCAAGAGTTGAAGTTATAGTCTTAAACCCAAAATCCACTGGCAAGAT	17278
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	500	CAGGCAAGAGTTGAAGTTATAGTCTTAAACCCAAAATCCACTGGCAAGAT	451

  AP000432.4	17279	TTTTATGTTATGGTTTTGAGGCAGAATTTCTTCTCTAAAAAACCTCAGTT	17328
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	450	TTTTATGTTATGGTTTTGAGGCAGAATTTCTTCTCTAAAAAACCTCAGTT	401

  AP000432.4	17329	TTTGCTCTTAAAATGTTCAAATGATTGATATCCACCCACATTATTCAGGA	17378
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	400	TTTGCTCTTAAAATGTTCAAATGATTGATATCCACCCACATTATTCAGGA	351

  AP000432.4	17379	TAATCTTCTTTACTTAAAGTCAACTGAGTATAAATATTAAGCACATTCAC	17428
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	350	TAATCTTCTTTACTTAAAGTCAACTGAGTATAAATATTAAGCACATTCAC	301

  AP000432.4	17429	ATCTAGCAATCTGGATGTGGGCACCTTAGCTTAGCCAAGTTGACGCATAC	17478
			||||||||||||||||||||||||| ||||||||||||||||||||||||
C  KC877791.1	300	ATCTAGCAATCTGGATGTGGGCACCATAGCTTAGCCAAGTTGACGCATAC	251

  AP000432.4	17479	AATCAACCATCACAACAACCTTCATTCAATAGCATTTTCTTACAGGCATG	17528
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	250	AATCAACCATCACAACAACCTTCATTCAATAGCATTTTCTTACAGGCATG	201

  AP000432.4	17529	ATGATAAATAGGTTTTAAAACATAAATCCCCTAGTGAACCACATAAAGCA	17578
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	200	ATGATAAATAGGTTTTAAAACATAAATCCCCTAGTGAACCACATAAAGCA	151

  AP000432.4	17579	TGCTTTTATTAAGAAAACAAATTACCTTGCTTTTATTTTTCTTTGCTCTT	17628
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	150	TGCTTTTATTAAGAAAACAAATTACCTTGCTTTTATTTTTCTTTGCTCTT	101

  AP000432.4	17629	TTCAGTCAGTTGTGTGGTAGTGAGGATGGGGTGGGGACGGGGGAAGGAGG	17678
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	100	TTCAGTCAGTTGTGTGGTAGTGAGGATGGGGTGGGGACGGGGGAAGGAGG	51

  AP000432.4	17679	ATTGGATGTCTGTTTTCAGGAGCATCTGCAGCATAACCATGTCAAATATT	17728
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877791.1	50	ATTGGATGTCTGTTTTCAGGAGCATCTGCAGCATAACCATGTCAAATATT	1

Compact alignment

skip 250 bps 100% identity alignment

  AP000432.4	17429	ATCTAGCAATCTGGATGTGGGCACCTTAGCTTAGCCAAGTTGACGCATAC	17478
			||||||||||||||||||||||||| ||||||||||||||||||||||||
C  KC877791.1	300	ATCTAGCAATCTGGATGTGGGCACCATAGCTTAGCCAAGTTGACGCATAC	251

skip 250 bps 100% identity alignment

Overview

Query
AP000432.4 - 141832 bps
Hit
KC877791.1 - 550 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 550 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81820550171791772811550-1
Short-link