<=>End overlap alignment

Alignment #1 HSP: 300 bps / non-identical: 50 bps

Full alignment

  AP000432.4	88439	AATGGAATGACACTTCTAAGGTCCAAAAGTAAATATAAATTTTAAATTGT	88488
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877788.1	300	AATGGAATGACACTTCTAAGGTCCAAAAGTAAATATAAATTTTAAATTGT	251

  AP000432.4	88489	TCTTTTAAATCTATGCACATTTCTCAGAATCTCAGAAAAAATAAACATTC	88538
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877788.1	250	TCTTTTAAATCTATGCACATTTCTCAGAATCTCAGAAAAAATAAACATTC	201

  AP000432.4	88539	CAAGAATAAAATGTGATTTGTATTATTTCTACTAAAAAAAAAAAAAAACT	88588
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877788.1	200	CAAGAATAAAATGTGATTTGTATTATTTCTACTAAAAAAAAAAAAAAACT	151

  AP000432.4	88589	CCCAAGCCAAATACCAAAGCAATGCACATCTGTTGAAATTAGGAATCCAG	88638
			|||||||||||||||||||||||||||||||||||||||||||||| |||
C  KC877788.1	150	CCCAAGCCAAATACCAAAGCAATGCACATCTGTTGAAATTAGGAATACAG	101

  AP000432.4	88639	TTATTAAATAAAGCTAAAAAATACACATCTGAAAAATAAAAGGCAACACA	88688
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877788.1	100	TTATTAAATAAAGCTAAAAAATACACATCTGAAAAATAAAAGGCAACACA	51

  AP000432.4	88689	AAGATTAGTGACTTGCTACTATTTTTTATTTGATTTTATTTGCACGTTAG	88738
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  KC877788.1	50	AAGATTAGTGACTTGCTACTATTTTTTATTTGATTTTATTTGCACGTTAG	1

Compact alignment

skip 150 bps 100% identity alignment

  AP000432.4	88589	CCCAAGCCAAATACCAAAGCAATGCACATCTGTTGAAATTAGGAATCCAG	88638
			|||||||||||||||||||||||||||||||||||||||||||||| |||
C  KC877788.1	150	CCCAAGCCAAATACCAAAGCAATGCACATCTGTTGAAATTAGGAATACAG	101

skip 100 bps 100% identity alignment

Overview

Query
AP000432.4 - 141832 bps
Hit
KC877788.1 - 300 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 300 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.66670300884398873811300-1
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