<=>End overlap alignment

Alignment #1 HSP: 472 bps / non-identical: 490 bps

Full alignment

CT030234.9	56557	TTGTAACATCCCGTTTTCCCAACTTAAAAATTTCAAACAAG-AATCAGAG	56605
			|||||||| ||||||||||| ||||||||||||||   ||  ||||||||
CU576539.1	80518	TTGTAACACCCCGTTTTCCCGACTTAAAAATTTCATTTAATTAATCAGAG	80567

CT030234.9	56606	TAA--AACATCACATAAACGGGATATCACATTTCTTAAAAATCTTAAATA	56653
			||   |||||    ||||||| ||   ||| ||||||||| || ||||||
CU576539.1	80568	TATTCAACATG---TAAACGGAATGCTACACTTCTTAAAA-TCATAAATA	80613

CT030234.9	56654	-GATAAATAA-TAAGTTATCCTTCAACATA--AA-TCATCAACGTAATAG	56698
			 | ||| ||| ||| |||||||||||||||  || |||  ||| |    |
CU576539.1	80614	AGTTAATTAACTAATTTATCCTTCAACATATTAACTCA--AACTTT---G	80658

CT030234.9	56699	CAACGGATTAAATTCTTCAACATAAATTGTCTTGGCACGCAGGCCTCATC	56748
			|| |||||||||||| | ||||||||  ||||||||||| | ||||||||
CU576539.1	80659	CAGCGGATTAAATTCATTAACATAAAAAGTCTTGGCACGAATGCCTCATC	80708

CT030234.9	56749	AAAACACCTCATAAA--TTCAATTCAAACAACTTAATCAT---AATTCAA	56793
			|||||| ||||||||  | |||||  ||||||||||||||   |||| | 
CU576539.1	80709	AAAACATCTCATAAAAATCCAATT--AACAACTTAATCATTTAAATTTA-	80755

CT030234.9	56794	TAAATCAATACGTAAAGGAATAGAA--GCATGCAATCAAAGACCCCATCC	56841
			|||| |||||||||| |||||||||  |||||||| |||||  | |||||
CU576539.1	80756	TAAA-CAATACGTAA-GGAATAGAAAAGCATGCAA-CAAAGTTCTCATCC	80802

CT030234.9	56842	CGTTACGTATCAGAGCAACCTAA--GACTCAGTGAGGAAAGGCCACTCAC	56889
			| ||||||||||||||| |||||  |||||||||||| |  |||||||||
CU576539.1	80803	CATTACGTATCAGAGCA-CCTAAACGACTCAGTGAGGGATAGCCACTCAC	80851

CT030234.9	56890	GACAGCAAA-CACAACAACCTACTCTTGATCACCTGCAAGTTACTCATAC	56938
			||||| ||| |||| ||||||||||| |||||||||||||||||||||||
CU576539.1	80852	GACAGGAAAACACAGCAACCTACTCTCGATCACCTGCAAGTTACTCATAC	80901

CT030234.9	56939	GAAGAGCAACATTTTCAAGCAGAAGGGGTGAGATTTCATAAAACAATAAC	56988
			||||||||||||||||||||||||||||||||||| || ||  |||||| 
CU576539.1	80902	GAAGAGCAACATTTTCAAGCAGAAGGGGTGAGATT-CACAAT-CAATAAT	80949

CT030234.9	56989	ATTAAACATATAATTCAACAATTATATTTAACAACATAAA	57028
			| |||  |||||||||| ||| |  || ||||||| ||||
CU576539.1	80950	AATAAT-ATATAATTCATCAAATGCATCTAACAACTTAAA	80988

Overview

Query
CT030234.9 - 112511 bps
Hit
CU576539.1 - 107262 bps
Total alignments
6
Best alignment
alignment #1 (HSP: 472 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
181.531664725655757028180518809881
274.573677549077991532134223348551
393.333524398630086738134406348551
496.173714688673387200140743412121
596.363774669152791992140743412101
676.49443315842016180519809671
Short-link