<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

CU407332.8	1	GAGGTATCAGAAAAGCACTGGGTATTAGAAGAAAAACCTGTGCGTTTTTT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150256	GAGGTATCAGAAAAGCACTGGGTATTAGAAGAAAAACCTGTGCGTTTTTT	150305

CU407332.8	51	AGAGGGGAGGATGCACCAACAACCCCATACATATTCAAAAAACCAACTGG	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150306	AGAGGGGAGGATGCACCAACAACCCCATACATATTCAAAAAACCAACTGG	150355

CU407332.8	101	AAAAAAAAACAACACTAAACTCTTGAGGGATAAAAATCACTAAGCAATCT	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150356	AAAAAAAAACAACACTAAACTCTTGAGGGATAAAAATCACTAAGCAATCT	150405

CU407332.8	151	AGGAGTAGAAAGAACTCAAGTTAGCCTCAATTTTAAAAAAGAGTGGCTGA	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150406	AGGAGTAGAAAGAACTCAAGTTAGCCTCAATTTTAAAAAAGAGTGGCTGA	150455

CU407332.8	201	GCACACCTTGAATCCCAGTACTCGGGAGGCAGAGGCAGGCAGATCTCTGT	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150456	GCACACCTTGAATCCCAGTACTCGGGAGGCAGAGGCAGGCAGATCTCTGT	150505

CU407332.8	251	GAGTTTGAGACCAGCCTGGTCTACAAAGAGAGTGCAGGACAGCCAGAGCT	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150506	GAGTTTGAGACCAGCCTGGTCTACAAAGAGAGTGCAGGACAGCCAGAGCT	150555

CU407332.8	301	CTGTTACACAGAGAAACTCTGTCTCCAAAAATGGGAAAAGAAGAAGGAGG	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150556	CTGTTACACAGAGAAACTCTGTCTCCAAAAATGGGAAAAGAAGAAGGAGG	150605

CU407332.8	351	AGGAGGATGAGAAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAG	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150606	AGGAGGATGAGAAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAG	150655

CU407332.8	401	GAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAA	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150656	GAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAA	150705

CU407332.8	451	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150706	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA	150755

CU407332.8	501	AGAAGAAGAAAGGAAAGGAAAGAAAAGAGAAAGAAAGAAAGAAAGAAAGG	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150756	AGAAGAAGAAAGGAAAGGAAAGAAAAGAGAAAGAAAGAAAGAAAGAAAGG	150805

CU407332.8	551	AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAAAGAAAGAAAGA	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150806	AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAAAGAAAGAAAGA	150855

CU407332.8	601	AAGAGAGAAAGGGAGGAAGGAAGAAAGGGAAGAAGGAAGGAAGGGAGGAA	650
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150856	AAGAGAGAAAGGGAGGAAGGAAGAAAGGGAAGAAGGAAGGAAGGGAGGAA	150905

CU407332.8	651	GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	700
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150906	GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	150955

CU407332.8	701	AAGACGGTTCTCTGTACTGGTGAGATGGTGAAGTGTGTAAAGGAACTTAC	750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	150956	AAGACGGTTCTCTGTACTGGTGAGATGGTGAAGTGTGTAAAGGAACTTAC	151005

CU407332.8	751	CACACAAACCTGTAGAGGACCAACTCCACAACGTTGTCCTCTGACCTCAA	800
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151006	CACACAAACCTGTAGAGGACCAACTCCACAACGTTGTCCTCTGACCTCAA	151055

CU407332.8	801	GATGTACGTGCTATGACCCATGTGCCCACAGGCATACACCACACACAATA	850
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151056	GATGTACGTGCTATGACCCATGTGCCCACAGGCATACACCACACACAATA	151105

CU407332.8	851	CATTAATAAAGGTAATTTTAAAAGAAAACCAGTTTGTTACCTAAAACTTG	900
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151106	CATTAATAAAGGTAATTTTAAAAGAAAACCAGTTTGTTACCTAAAACTTG	151155

CU407332.8	901	CTGGCAAAATACTGAAAGCATCTTGCTGAGATGGGGACTCAGACAAGGAA	950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151156	CTGGCAAAATACTGAAAGCATCTTGCTGAGATGGGGACTCAGACAAGGAA	151205

CU407332.8	951	GTCCACCTGTGTTGGTTTGAATGAGAGTCCTAACCCCCATATTTGAATAC	1000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151206	GTCCACCTGTGTTGGTTTGAATGAGAGTCCTAACCCCCATATTTGAATAC	151255

CU407332.8	1001	TTGGTCCCCAGTTAGTGGAACTGTATGGGAAGAATGAGGAGGTGTGGCCT	1050
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151256	TTGGTCCCCAGTTAGTGGAACTGTATGGGAAGAATGAGGAGGTGTGGCCT	151305

CU407332.8	1051	CAGAGGAGGCGTGTCAAAGGAGCTGGGGTTGCTTTTGAGGTTTCAAAAGA	1100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151306	CAGAGGAGGCGTGTCAAAGGAGCTGGGGTTGCTTTTGAGGTTTCAAAAGA	151355

CU407332.8	1101	CGGTCTAGATGCTCTTGCTCTCTGCCTACTGCTTTGCAGATCAAGATGGG	1150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151356	CGGTCTAGATGCTCTTGCTCTCTGCCTACTGCTTTGCAGATCAAGATGGG	151405

CU407332.8	1151	AGCTCTCAGCTGTTCCTGCTGCTTTGACTCCATCCTGCCATCATGGACTC	1200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151406	AGCTCTCAGCTGTTCCTGCTGCTTTGACTCCATCCTGCCATCATGGACTC	151455

CU407332.8	1201	TAATCTTCTGAAATCATAAGCCTAACTAAACACTTTCTTTTATAAGTCAC	1250
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151456	TAATCTTCTGAAATCATAAGCCTAACTAAACACTTTCTTTTATAAGTCAC	151505

CU407332.8	1251	CTCGGTCATGGTACCTTGCTTGTCACCATAGTTAGTAGAAAACTAATACA	1300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151506	CTCGGTCATGGTACCTTGCTTGTCACCATAGTTAGTAGAAAACTAATACA	151555

CU407332.8	1301	CCATTTCTGCTGAACTAGACATTCTGATCAGGGCAAAGTGGAAGGAAAGA	1350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151556	CCATTTCTGCTGAACTAGACATTCTGATCAGGGCAAAGTGGAAGGAAAGA	151605

CU407332.8	1351	GGGTAAAGCAAGACTCTGCCTTTACAGACGAGGTGGTCTTACATAGATAA	1400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151606	GGGTAAAGCAAGACTCTGCCTTTACAGACGAGGTGGTCTTACATAGATAA	151655

CU407332.8	1401	AACCCTAGAGAAGGGCTGTGGATATAGATCAGTGGCAGAACACTTGGCCA	1450
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151656	AACCCTAGAGAAGGGCTGTGGATATAGATCAGTGGCAGAACACTTGGCCA	151705

CU407332.8	1451	GCAGTCACAAGACTATGAATTCAACCCCCAGCATCCTCACCATCACCACA	1500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151706	GCAGTCACAAGACTATGAATTCAACCCCCAGCATCCTCACCATCACCACA	151755

CU407332.8	1501	GCAAAGGAAGGCTTTGAAGAGATCACAAACACAGAAAACAAAACCTATCA	1550
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151756	GCAAAGGAAGGCTTTGAAGAGATCACAAACACAGAAAACAAAACCTATCA	151805

CU407332.8	1551	GAGTTAACACATAAGTTCAGCAAACTATCAGTATATCATAATAATAATAT	1600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151806	GAGTTAACACATAAGTTCAGCAAACTATCAGTATATCATAATAATAATAT	151855

CU407332.8	1601	ACAGCAAAGTATCAATAAAGAAAGTTAATTCTAAGGCCGGAGAGATGGCT	1650
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151856	ACAGCAAAGTATCAATAAAGAAAGTTAATTCTAAGGCCGGAGAGATGGCT	151905

CU407332.8	1651	CAGAAGCTAAGAGCACTGGCTGCCTTTCCAGAGGACCTAGTTTTGGTTTC	1700
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151906	CAGAAGCTAAGAGCACTGGCTGCCTTTCCAGAGGACCTAGTTTTGGTTTC	151955

CU407332.8	1701	TCACACTCACATGGTAGCTCACAACCATCTGTGACATCAGCTCCAGAGGA	1750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	151956	TCACACTCACATGGTAGCTCACAACCATCTGTGACATCAGCTCCAGAGGA	152005

CU407332.8	1751	TCTGGTGTCTTGTTTTGCCTTCTACAGACACCAGGCAGTGATCTTAACTG	1800
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	152006	TCTGGTGTCTTGTTTTGCCTTCTACAGACACCAGGCAGTGATCTTAACTG	152055

CU407332.8	1801	CTGAGCCATCTCTCCTGTCCCAAGATAACTAATTTTTTTGTCTGAGTCAA	1850
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	152056	CTGAGCCATCTCTCCTGTCCCAAGATAACTAATTTTTTTGTCTGAGTCAA	152105

CU407332.8	1851	TGTCACTTCAAATTCTTTCTTTTCTTTTCTTTTTTTTTTTTTAAAGAAAT	1900
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	152106	TGTCACTTCAAATTCTTTCTTTTCTTTTCTTTTTTTTTTTTTAAAGAAAT	152155

CU407332.8	1901	CTTTTCATTTTCTTTTTTGTTTGTCTGTTTGTTGGAGGCGGGGGGCAGGG	1950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	152156	CTTTTCATTTTCTTTTTTGTTTGTCTGTTTGTTGGAGGCGGGGGGCAGGG	152205

CU407332.8	1951	GGCGGATCGAAGCAGAGTTTATTTGTATAGCCCTGGCTGTCCTGGAATTC	2000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CU405628.17	152206	GGCGGATCGAAGCAGAGTTTATTTGTATAGCCCTGGCTGTCCTGGAATTC	152255

Overview

Query
CU407332.8 - 111396 bps
Hit
CU405628.17 - 152255 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

Short-link