<=>End overlap alignment

Alignment #1 HSP: 102 bps / non-identical: 100 bps

Full alignment

CU012043.5	97821	AATATGCTAATATTTGTTCAAGTGTACAGGACTATAGACAAAAAAAATTG	97870
			||||||||||||||||||||||||||||||||||||||||||||   |||
CU179637.4	135019	AATATGCTAATATTTGTTCAAGTGTACAGGACTATAGACAAAAA--TTTG	135066

CU012043.5	97871	ACATCTTAAAAAGGTCTTGAAAGAACAAATAAAGAGCAAATACATCAACA	97920
			||||||||            ||||||||||||||||||||||||||||||
CU179637.4	135067	ACATCTTA-----------GAAGAACAAATAAAGAGCAAATACATCAACA	135105

CU012043.5	97921	AA	97922
			||
CU179637.4	135106	AA	135107

Compact alignment

CU012043.5	97821	AATATGCTAATATTTGTTCAAGTGTACAGGACTATAGACAAAAAAAATTG	97870
			||||||||||||||||||||||||||||||||||||||||||||   |||
CU179637.4	135019	AATATGCTAATATTTGTTCAAGTGTACAGGACTATAGACAAAAA--TTTG	135066

CU012043.5	97871	ACATCTTAAAAAGGTCTTGAAAGAACAAATAAAGAGCAAATACATCAACA	97920
			||||||||            ||||||||||||||||||||||||||||||
CU179637.4	135067	ACATCTTA-----------GAAGAACAAATAAAGAGCAAATACATCAACA	135105

skip 2 bps 100% identity alignment

Overview

Query
CU012043.5 - 120690 bps
Hit
CU179637.4 - 137927 bps
Total alignments
12
Best alignment
alignment #1 (HSP: 102 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
183.1455102978219792211350191351071
278.689730416953172561389742011
396.282382964777348068141935422301
491.841982948072081013141935422281
589.731772926384864139141937422281
686.052214913797938469149135496361
776.74984923797838469-149136496381
898.5533685472954796192093921611
910031635472954791-192098921601
1010035645472854791192911929741
1110031635472954791-192923929851
1272.1938613777426875644195404966511
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