<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

C  CU104774.5	142151	AAGCTTGTGGTTCCCCTACGAAACCCAAACTGGCCTCTGAAAATTCAGTC	142102
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79034	AAGCTTGTGGTTCCCCTACGAAACCCAAACTGGCCTCTGAAAATTCAGTC	79083

C  CU104774.5	142101	TCAAAGTGTAATGCAATGTCTGCTCGTGAGTCAAAACCTGGCATTGTTCA	142052
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79084	TCAAAGTGTAATGCAATGTCTGCTCGTGAGTCAAAACCTGGCATTGTTCA	79133

C  CU104774.5	142051	TTCTGGAGCGCAAACACAAACTGTTTCGCGAACAAATGCTGCGCCACATT	142002
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79134	TTCTGGAGCGCAAACACAAACTGTTTCGCGAACAAATGCTGCGCCACATT	79183

C  CU104774.5	142001	TGATGGTTTCTCAAGCAAAAAATGTGGCACATACTGTTCCTGCTTGCAGT	141952
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79184	TGATGGTTTCTCAAGCAAAAAATGTGGCACATACTGTTCCTGCTTGCAGT	79233

C  CU104774.5	141951	ACTTTGACAAAGACACCCATTTCTGCTGGTGGGCACCAAAAGATTCGTTC	141902
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79234	ACTTTGACAAAGACACCCATTTCTGCTGGTGGGCACCAAAAGATTCGTTC	79283

C  CU104774.5	141901	AAATGTGCCTGCTGGTAGTTCTTTGACAAAGACACCCATTTCTACTGGTT	141852
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79284	AAATGTGCCTGCTGGTAGTTCTTTGACAAAGACACCCATTTCTACTGGTT	79333

C  CU104774.5	141851	TGGCTCCTGTTCAGCCAAATGTAAATGTGCCTGACGGTAGGTCTTTATCA	141802
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79334	TGGCTCCTGTTCAGCCAAATGTAAATGTGCCTGACGGTAGGTCTTTATCA	79383

C  CU104774.5	141801	AGAACACCCATTGCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAA	141752
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79384	AGAACACCCATTGCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAA	79433

C  CU104774.5	141751	TGTGCATGTTGGTAGTTCTTTGACGAAGATACCCATTTCTGCTGGTTTGC	141702
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79434	TGTGCATGTTGGTAGTTCTTTGACGAAGATACCCATTTCTGCTGGTTTGC	79483

C  CU104774.5	141701	CTTCTAACCAAAAGGTTTATTCAAATGTGCCTGCCGCTAGTTCTTTGACG	141652
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79484	CTTCTAACCAAAAGGTTTATTCAAATGTGCCTGCCGCTAGTTCTTTGACG	79533

C  CU104774.5	141651	AAGACACCCAATTCTGCCGGTTTACCTTCTGACCCAAAGGTTCATTCAAA	141602
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79534	AAGACACCCAATTCTGCCGGTTTACCTTCTGACCCAAAGGTTCATTCAAA	79583

C  CU104774.5	141601	TGTAGCTGCCGGTAGTTCTTTGCCAAAGACACCCATTTCTGCTGGTTTGC	141552
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79584	TGTAGCTGCCGGTAGTTCTTTGCCAAAGACACCCATTTCTGCTGGTTTGC	79633

C  CU104774.5	141551	CTTCTAACCAAAAGGTTCATTCAAATGTACTTGCTGGTAGTTCTTTGACA	141502
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79634	CTTCTAACCAAAAGGTTCATTCAAATGTACTTGCTGGTAGTTCTTTGACA	79683

C  CU104774.5	141501	AAGCCACCCATTTCTGTTGGTTTGCCTTCTGACCCAAAGGTTCATTCAAA	141452
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79684	AAGCCACCCATTTCTGTTGGTTTGCCTTCTGACCCAAAGGTTCATTCAAA	79733

C  CU104774.5	141451	TGTGTCTACTGGTAGTTCTTTGACAAAGACACCCATTTCTGCTGGTTTGC	141402
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79734	TGTGTCTACTGGTAGTTCTTTGACAAAGACACCCATTTCTGCTGGTTTGC	79783

C  CU104774.5	141401	CTTCTAACCAAAAGGTTCATTCAAATGTGCCTACTGGTAATTCTTTGACA	141352
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79784	CTTCTAACCAAAAGGTTCATTCAAATGTGCCTACTGGTAATTCTTTGACA	79833

C  CU104774.5	141351	AAGACACCCATTTCTTCTTGTTTGCCTTCCAACCAAAAGGTTCATTTAAA	141302
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79834	AAGACACCCATTTCTTCTTGTTTGCCTTCCAACCAAAAGGTTCATTTAAA	79883

C  CU104774.5	141301	TGTGTCTGCCGGTAATTCTTTGACGAAGACACCCATTACTGCTGGTTTGC	141252
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79884	TGTGTCTGCCGGTAATTCTTTGACGAAGACACCCATTACTGCTGGTTTGC	79933

C  CU104774.5	141251	CTTCTAATCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACG	141202
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79934	CTTCTAATCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACG	79983

C  CU104774.5	141201	AAGACGCCCATTACTGCTGGTTTGCCTTCTAATCAAAAGGCTCATTCAAA	141152
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	79984	AAGACGCCCATTACTGCTGGTTTGCCTTCTAATCAAAAGGCTCATTCAAA	80033

C  CU104774.5	141151	CGTGCCTGCCGGCAGTTCTTTGACGAAGACACCCATTTCTGTTGGTTTGC	141102
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80034	CGTGCCTGCCGGCAGTTCTTTGACGAAGACACCCATTTCTGTTGGTTTGC	80083

C  CU104774.5	141101	CTTCTAACCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACG	141052
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80084	CTTCTAACCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACG	80133

C  CU104774.5	141051	AAGACGCCCATTTCTGTTGGTTTGCCTTCTGACAAAAAGGTTCATTTAAA	141002
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80134	AAGACGCCCATTTCTGTTGGTTTGCCTTCTGACAAAAAGGTTCATTTAAA	80183

C  CU104774.5	141001	TGTGCATGTTGCTAGTTCTCTGACAAAGACACCCATTTCTGCTAGTTCAC	140952
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80184	TGTGCATGTTGCTAGTTCTCTGACAAAGACACCCATTTCTGCTAGTTCAC	80233

C  CU104774.5	140951	CTTCTAACCAAAAGGTCCATTCAAATGTACCTGTCGGTAGTTCTTTGACG	140902
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80234	CTTCTAACCAAAAGGTCCATTCAAATGTACCTGTCGGTAGTTCTTTGACG	80283

C  CU104774.5	140901	AAGACACCCATTTCTTCTGGTTTGTCTTCTGACAAAAAGGTTCATTCTAA	140852
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80284	AAGACACCCATTTCTTCTGGTTTGTCTTCTGACAAAAAGGTTCATTCTAA	80333

C  CU104774.5	140851	TGTACCTGTTGCTAGTTCTCTGACAAAGACACCCATTTATGCTGGTTTGC	140802
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80334	TGTACCTGTTGCTAGTTCTCTGACAAAGACACCCATTTATGCTGGTTTGC	80383

C  CU104774.5	140801	CTTCGGGCCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACA	140752
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80384	CTTCGGGCCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACA	80433

C  CU104774.5	140751	AAGACACCCGTTTCGGCTAGTTCGCCTTCTGACCCAAAGGTTCATTCAAA	140702
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80434	AAGACACCCGTTTCGGCTAGTTCGCCTTCTGACCCAAAGGTTCATTCAAA	80483

C  CU104774.5	140701	TGTACCTGCTGGTAATTCTGTGACAAAGACACCCATTTCGGCTGGTTTGC	140652
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80484	TGTACCTGCTGGTAATTCTGTGACAAAGACACCCATTTCGGCTGGTTTGC	80533

C  CU104774.5	140651	CTTCTGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATACTTTGACA	140602
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80534	CTTCTGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATACTTTGACA	80583

C  CU104774.5	140601	AAGACACCCATTTCCGCTGGTTTGCCTTCCGACCCTAAGGTTCATTCAAA	140552
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80584	AAGACACCCATTTCCGCTGGTTTGCCTTCCGACCCTAAGGTTCATTCAAA	80633

C  CU104774.5	140551	TGTGCCTGCTGGTAATTCTTTGACAAAGATACCCATTTCCGCTGGTTTTC	140502
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80634	TGTGCCTGCTGGTAATTCTTTGACAAAGATACCCATTTCCGCTGGTTTTC	80683

C  CU104774.5	140501	CTTCGGACCCAAAAGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACT	140452
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80684	CTTCGGACCCAAAAGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACT	80733

C  CU104774.5	140451	AAGACACCCATTTCTGCTTGTTTGCCTTCTGACCCAAAGGTTCATTCAAA	140402
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80734	AAGACACCCATTTCTGCTTGTTTGCCTTCTGACCCAAAGGTTCATTCAAA	80783

C  CU104774.5	140401	TGTGCTTGCTGGCAATTCTTTGACAAAGACACCCATTTCCACTGGTTTGC	140352
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80784	TGTGCTTGCTGGCAATTCTTTGACAAAGACACCCATTTCCACTGGTTTGC	80833

C  CU104774.5	140351	CTTCTGACCAAAAGGTTTATTCCAATGTGCCTTATTAACTTCTTACATCA	140302
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80834	CTTCTGACCAAAAGGTTTATTCCAATGTGCCTTATTAACTTCTTACATCA	80883

C  CU104774.5	140301	TGCAATTAGTATATCAAATATTTGTCTCCCTAAAAAATGGAGTTTTTTTT	140252
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80884	TGCAATTAGTATATCAAATATTTGTCTCCCTAAAAAATGGAGTTTTTTTT	80933

C  CU104774.5	140251	TTGCTTATTTTTGTGTCTATTGTCTCAACAGGATAAACATGTTACCTCTG	140202
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80934	TTGCTTATTTTTGTGTCTATTGTCTCAACAGGATAAACATGTTACCTCTG	80983

C  CU104774.5	140201	TGAAAGAAGAGGAAAAAAGACTCGCTGAGCCTGGCTCCACACCAAAAGAG	140152
			||||||||||||||||||||||||||||||||||||||||||||||||||
  CU137640.12	80984	TGAAAGAAGAGGAAAAAAGACTCGCTGAGCCTGGCTCCACACCAAAAGAG	81033

Overview

Query
CU104774.5 - 142151 bps
Hit
CU137640.12 - 81033 bps
Total alignments
22
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
110019742000140152142151-179034810331
276.3542797309373371170929712151
386.579111577140322141898-179218807881
483.34356753140320141072-179222799651
583.76407828140320141147-179222800401
683.67440903140320141222-179222801151
782.555471201140320141520-179224804151
882.73272594140320140913-179231798151
983.266051269140320141588-179231804901
1084.547361419140320141738-179231806401
1183.96531301140320141620-179268805651
1286.88491451140320141770-179268807151
1386.639091571140397141967-179287808631
1486.848461448140470141917-179415808651
1584.647331410140545141954-179447808651
1683.946511298140620141917-179565808651
1783.376031260140695141954-179597808651
1882.695461192140770141961-179665808651
1983.83439894141070141963-179963808651
2083.93407819141145141963-180038808651
2183.53356744141220141963-180113808651
2282.99270585141370141954-180272808651
Short-link