<=>End overlap alignment

Alignment #1 HSP: 54 bps / non-identical: 50 bps

Full alignment

C  CU013530.14	3762	ACCTGCAAGTTACCCATACGAAGGGCAACATTTTCAAGTAGAAGGGGTGA	3713
			|||||||||||||||||||||||||||||||||||||| |||||||||||
  CT943657.7	34879	ACCTGCAAGTTACCCATACGAAGGGCAACATTTTCAAGCAGAAGGGGTGA	34928

C  CU013530.14	3712	GATT	3709
			||||
  CT943657.7	34929	GATT	34932

Compact alignment

C  CU013530.14	3762	ACCTGCAAGTTACCCATACGAAGGGCAACATTTTCAAGTAGAAGGGGTGA	3713
			|||||||||||||||||||||||||||||||||||||| |||||||||||
  CT943657.7	34879	ACCTGCAAGTTACCCATACGAAGGGCAACATTTTCAAGCAGAAGGGGTGA	34928

skip 4 bps 100% identity alignment

Overview

Query
CU013530.14 - 139253 bps
Hit
CT943657.7 - 39290 bps
Total alignments
14
Best alignment
alignment #1 (HSP: 54 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
198.15515437093762-134879349321
275984792778828266-134507349781
376.061024773775338229-134507349781
493.176679598695987917-134750356861
590.232518619986249-136388364381
684.621152595948959747136753370121
779.091373858377284156136785372051
895.091311638402784189136883370451
977.05331228566485785-136891370121
1086.51102005961359812137071372701
1185.021082075096151167-137095373011
1285.72902458477485018-137643378871
1393.21041912630326493-137697378871
1488.6265168134019134186137750379161
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