<=>End overlap alignment

Alignment #1 HSP: 364 bps / non-identical: 50 bps

Full alignment

C  KC877795.1	364	GTGGGAGAGGCTTCTCTGCCTTTGGGAAAAAAAGGGAAGAGTGGGAAGCA	315
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133110	GTGGGAGAGGCTTCTCTGCCTTTGGGAAAAAAAGGGAAGAGTGGGAAGCA	133159

C  KC877795.1	314	CTGTGTCTTGTGGTTTGAGTGCCACCTTAGGTGCAGTACAATAGAACACC	265
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133160	CTGTGTCTTGTGGTTTGAGTGCCACCTTAGGTGCAGTACAATAGAACACC	133209

C  KC877795.1	264	AGGTAGACTTCTAAGCTTTTTGCCTCTAGACCCCAACTCCAAGGTGGCAT	215
			|||||||||||||||||||||||| |||||||||||||||||||||||||
  AP000457.3	133210	AGGTAGACTTCTAAGCTTTTTGCCGCTAGACCCCAACTCCAAGGTGGCAT	133259

C  KC877795.1	214	CTCTGGACCCACCTTAGGCCTGGGGAAAGTCACCACCTTTAATGGAAGAA	165
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133260	CTCTGGACCCACCTTAGGCCTGGGGAAAGTCACCACCTTTAATGGAAGAA	133309

C  KC877795.1	164	CAGATGCCTGGCTGACTCTGCCACCTGCTGATTGTATAACCCCAGAACCT	115
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133310	CAGATGCCTGGCTGACTCTGCCACCTGCTGATTGTATAACCCCAGAACCT	133359

C  KC877795.1	114	TGAGCAAACAAAGGCAGTACACAGGAAATGGATACAGGTGGCCTTGGGGG	65
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133360	TGAGCAAACAAAGGCAGTACACAGGAAATGGATACAGGTGGCCTTGGGGG	133409

C  KC877795.1	64	AGAACCAGTGTTGTGCTGGCTTCAGGTCTGACTCAGTGCAGTCATAGTGA	15
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000457.3	133410	AGAACCAGTGTTGTGCTGGCTTCAGGTCTGACTCAGTGCAGTCATAGTGA	133459

C  KC877795.1	14	TGGTGGCTTGTGTC	1
			||||||||||||||
  AP000457.3	133460	TGGTGGCTTGTGTC	133473

Compact alignment

skip 100 bps 100% identity alignment

C  KC877795.1	264	AGGTAGACTTCTAAGCTTTTTGCCTCTAGACCCCAACTCCAAGGTGGCAT	215
			|||||||||||||||||||||||| |||||||||||||||||||||||||
  AP000457.3	133210	AGGTAGACTTCTAAGCTTTTTGCCGCTAGACCCCAACTCCAAGGTGGCAT	133259

skip 214 bps 100% identity alignment

Overview

Query
KC877795.1 - 364 bps
Hit
AP000457.3 - 165221 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 364 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.725303641364-11331101334731
Short-link