<=>End overlap alignment

Alignment #1 HSP: 300 bps / non-identical: 310 bps

Full alignment

AC124312.5	172467	TTTTCTTTTTGTTTTTTTGAGACAGGGTCTCATTCTGTCGCCCAGGCTAG	172516
			|||| ||||| ||||||||||||||  ||||  |||||| |||||||| |
AC090983.13	202049	TTTTTTTTTTTTTTTTTTGAGACAGACTCTCGGTCTGTCTCCCAGGCTGG	202098

AC124312.5	172517	AGCACAGTGGCATG-GATCTTGGCTAACTGCAGCCTCAACTTCCCAGGCT	172565
			||  ||||||  || ||||| |||| ||||||  |||  | |||  || |
AC090983.13	202099	AGTGCAGTGG--TGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTT	202146

AC124312.5	172566	CAAGTGATCCTCACACTTCAGTCTGTCAAGTAGCTAGGACTATCAGCACG	172615
			 |||  || ||| ||| |||| ||  ||||||| | |||||    |||| 
AC090983.13	202147	TAAGCAATTCTC-CACCTCAGCCTC-CAAGTAGTTGGGACTGCAGGCACC	202194

AC124312.5	172616	CACCTCCAAGCCCGGCTAATT------TTATTTTTT-GTAGAGA-AGAGG	172657
			|||| ||||||||| ||||||       |||||||| ||||||| ||| |
AC090983.13	202195	CACCACCAAGCCCGACTAATTCTTTTTGTATTTTTTAGTAGAGACAGA-G	202243

AC124312.5	172658	TCTCCCTGTGTTGCCCAGGCTGGTCTCAAACTCCTGGACTCAAGTAATCC	172707
			| || |  ||| | ||||||||||||  ||||||||  |||| || ||||
AC090983.13	202244	TTTCACCATGTGGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCC	202293

AC124312.5	172708	TCCTGCCCCAGCCTCCCAAAGCGCTGGGATTACATGCATGAGC-TCCATG	172756
			 ||  || | ||||||||||| |||||||||| | ||||||||  |||||
AC090983.13	202294	GCCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATG	202343

AC124312.5	172757	CCCAGTCAAA	172766
			||||| ||||
AC090983.13	202344	CCCAGCCAAA	202353

Overview

Query
AC124312.5 - 181639 bps
Hit
AC090983.13 - 203244 bps
Total alignments
32
Best alignment
alignment #1 (HSP: 300 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
175.747430017246717276612020492023531
289.418728498743990261101612981
388.221862976609666392-1102313191
489.2219629361022613141102313191
589.4518327361042613141438946631
687.79182292125050125341-115003152971
789.931942896102761315115009152961
888.811912946102361316130363306571
986.641823096608066388-130366306721
1070.411879579265193607130370313021
1190.852052936102361315131029313231
1289.471882849875199034131029313131
1388.15183290157344157633134484347701
1487.221843166608166396135564358761
1589.25198303125038125340135566358721
1688.84186297100492100788-135572358671
1790.482002946102261315-135579358721
1889.81892859875099034-135589358721
1988.12183297125040125336141157414591
2087.46186296125044125339-146299466011
2178.69197463137919138381-146303467901
2291.092102896102761315146303465941
2390.981842675713357399187840881051
2489.091862856103161315194947952301
2587.7419329812503812533511176221179311
2688.411942946102261315-11176351179361
2787.7518630315642915673111259481262491
2886.27183292610226131311289381292431
2988.785037922915370611423291431211
3089.3452080229153716-11456131464101
3187.722438233333714-11743131746941
3289.1827642729153341-11749481753721
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