<=>End overlap alignment

Alignment #1 HSP: 481 bps / non-identical: 50 bps

Full alignment

KC877651.1	1	GCAGCACTACGGGGCTGTAACTAAGAGTTCCTCGCACGTGGGAAGCTGAA	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	93797	GCAGCACTACGGGGCTGTAACTAAGAGTTCCTCGCACGTGGGAAGCTGAA	93846

KC877651.1	51	CACCTTTGTAATCTTAAGCGCATGGGCCCCTGTTCATCCTAGTGACTTGC	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	93847	CACCTTTGTAATCTTAAGCGCATGGGCCCCTGTTCATCCTAGTGACTTGC	93896

KC877651.1	101	ATCTATGTGAAATCAACCCAACAAAGACAAGACCAAGAAAAGGCTTAGTA	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	93897	ATCTATGTGAAATCAACCCAACAAAGACAAGACCAAGAAAAGGCTTAGTA	93946

KC877651.1	151	GCCTGACATTCTTCTACACTTGTATTTTGGTTAGAGAAGTTTAACAAGGG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	93947	GCCTGACATTCTTCTACACTTGTATTTTGGTTAGAGAAGTTTAACAAGGG	93996

KC877651.1	201	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTAAAGCTTTATAAT	250
			||||||||||||||||||||||||||||||||||||| ||||||||||||
AC004099.1	93997	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTGAAGCTTTATAAT	94046

KC877651.1	251	GTCTAAACACATCAATTAGAGCAGTTGTTTATTAAAATACAAACAAGGGA	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	94047	GTCTAAACACATCAATTAGAGCAGTTGTTTATTAAAATACAAACAAGGGA	94096

KC877651.1	301	GAAACCACACCATCTTTTAAAATACAGGCGCGAATTCCACATCACGCAGA	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	94097	GAAACCACACCATCTTTTAAAATACAGGCGCGAATTCCACATCACGCAGA	94146

KC877651.1	351	AGACAACGCATTTCGCTAAGGGCCACAGCATTCACTGGTTAATAAAGCCA	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	94147	AGACAACGCATTTCGCTAAGGGCCACAGCATTCACTGGTTAATAAAGCCA	94196

KC877651.1	401	CAGCTACAAAGTAATGAGATGTCCCACATGAATACTTTTTAACCACTTAC	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	94197	CAGCTACAAAGTAATGAGATGTCCCACATGAATACTTTTTAACCACTTAC	94246

KC877651.1	451	ATTCACGTCAACATATAAATAATGGAATTAA	481
			|||||||||||||||||||||||||||||||
AC004099.1	94247	ATTCACGTCAACATATAAATAATGGAATTAA	94277

Compact alignment

skip 200 bps 100% identity alignment

KC877651.1	201	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTAAAGCTTTATAAT	250
			||||||||||||||||||||||||||||||||||||| ||||||||||||
AC004099.1	93997	GTGATTTCAGAACAGACCCTGAAAATATTTTAAAGGTGAAGCTTTATAAT	94046

skip 231 bps 100% identity alignment

Overview

Query
KC877651.1 - 481 bps
Hit
AC004099.1 - 136222 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 481 bps)
Best alignment cartoon

Alternate alignments

Short-link