Zebrafish Library Details

Clone libraries used for the zebrafish genome project

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[Wellcome Library, London]

CHORI-211 BAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen Male testis DNA pTARBAC2.1 E. coli DH10B 105,907 165 kb 10x
Originators Contact
P. de Jong BACPAC Resources
Robert Geisler The Max-Planck-Institut fuer Entwicklungsbiologie
Distribution lib no. Contact
P. de Jong CHORI-211 BACPAC Resources

Daniokey BAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen Male testis DNA pIndigoBAC-536 E. coli DH10B 104064 175 kb 10x
Originators Contact
R.Plasterk Hubrecht laboratory, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
Keygene N.V. Keygene N.V. P.O. Box 216, 6700 AE Wageningen, The Netherlands.
Distribution lib no. Contact
imaGenes 735 imaGenes (previously RZPD)

Daniokey Pilot BAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen Male testis DNA pIndigoBAC-536 E. coli DH10B 11808 130 kb 1x
Originators Contact
R.Plasterk Hubrecht laboratory, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
Keygene N.V. Keygene N.V. P.O. Box 216, 6700 AE Wageningen, The Netherlands.
Distribution lib no. Contact
imaGenes 738 imaGenes (previously RZPD)

CHORI-73 Double haploid BAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen whole animal pTARBAC2.1 E. coli DH10B 297528 110 kb N/A
Originators Contact
P. de Jong BACPAC Resources
Distribution lib no. Contact
P. de Jong CHORI-73 BACPAC Resources

RPCI-71 BAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen Mixed gender DNA pTARBAC2 E. coli DH10B 33408 85 kb 1.7x
Originators Contact
P. de Jong BACPAC Resources
Robert Geisler The Max-Planck-Institut fuer Entwicklungsbiologie
Distribution lib no. Contact
P. de Jong RPCI-71 BACPAC Resources

BUSM1 PAC

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) AB Blood cells pCYPAC6 E. coli DH10B 104064 115 kb 7x
Originators Contact
Chris Amemiya Genome Resource Center, Department of Molecular Genetics, Virginia Mason Research Center Seattle.

ZfishFos Fosmid

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen embryo DNA pFOS-1 E. coli DH5alphaMCR 269280 40 kb 6x
Originators Contact
archives [ at ] sanger.ac.uk
Distribution lib no. Contact
The Wellcome Trust Sanger Institute ZFOS archives [ at ] sanger.ac.uk

CHORI-1073 Doubled haploid fosmid

Description of library

Species Strain Source Vector Host Strain No. of clones Average insert size Redundancy
Danio rerio (zebrafish) Tübingen whole fish pCC1FOS-CHA E. coli EPI300-T1R 433920 N/A N/A
Originators Contact
P. de Jong BACPAC Resources
Distribution lib no. Contact
P. de Jong CHORI-1073 BACPAC Resources
* quick link - http://q.sanger.ac.uk/cellsurf