Zebrafish Genome Project

Browsers Featuring Current Clone Path Data

• PGPviewer (Assembly Evaluation browser) - Browse the latest clone path and evaluate overlaps, contig order/orientation and aligment with supporting data.
• Chomoview (Assembly Browser) - Access the daily updated zebrafish clone path: search for clones with their accession or name, browse the paths and download the sequences.

Search Sequence Data

• Blast against all zebrafish clone sequences and two nextgen assemblies
• Status of a clone in the sequencing pipeline
• Details about clone libraries
• Online RepeatMasker

Download Data

• Download assemblies and assembly information
• Download clone sequence files

Genome Annotation on the Latest Assembly Zv9

• Zebrafish Ensembl - Access to the annotated zebrafish genome from the latest Ensembl assembly.
• Zebrafish Vega - Browse manually annotated zebrafish genome sequences from which data, assemblies and annotation are released frequently.

Tutorials

• Online Tutorials from the Zebrafish Web Resources Workshop 2011
• Next Zebrafish Web Resources Workshop, Barcelona 2013

• 17.04.2013:

  Zebrafish Genome Paper Published

  The paper describing the zebrafish genome sequence and its relationship to the human genome has been published. If you are interested in the sequence details, make sure to have a look at the supplementary material.

• 21.02.2013:

  Opendoor Workshop at 8th European Zebrafish Meeting, Barcelona, 2013: Working with Zebrafish Genome Resources

  In association with the 8th European Zebrafish Meeting, the Wellcome Trust Sanger Institute are pleased to announce a one day "Working with Zebrafish Genome Resources" Workshop (The workshop will run from 10:00 - 18:00 on Tuesday 9th July). Each workshop is broken into modules designed to give a broad overview of a given topic with examples chosen by the trainers. The modular structure consists of a discussion of theory and methods, coverage of software and web resources, and a series of "hands on" worked examples. Time is provided in each session for participants to carry out their own research in the presence of the trainers, and participants are encouraged to bring their own problems (e.g sequence for analysis) with them. All materials used during the workshop series will be available on the Web, in the form of manuals and information. Zebrafish specific examples will be used wherever possible.

  Please visit our website for further details and on-line registration. Any queries should be sent to zebrafish-odw@sanger.ac.uk.