NPG: Short-read sequencing pipeline

These interoperble hosted webservices support our short-read sequencing pipeline enabling automation of the entire instrument platform.

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License

These files are part of NPG.

NPG is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

[The Wellcome Trust Sanger Institute]

Pipeline tracking

New sequencing pipeline tracking

An MVC-style application, data model, and web/programmable API in Perl, for tracking runs and related entities performed using the new sequencing technologies (primarily Illumina/Solexa). 

cgi-bin/                   Basic CGI
data/                      TT2 templates, application config file
htdocs/                    CSS, javascript, graphics
lib/api/                   Web API
lib/model/                 Data model
lib/view/                  Application views
lib/controller.pm          Application controller
scripts/                   Database dumping & access scripts, deployment, examples
t/                         Tests!

Downloads

New Sequencing common modules

Common modules shared over the different NPG applications

lib/npg_common/            namespace for shared modules
t/                         Tests!
mock/                      space for lib/npg_common replacement for Sanger specific modules

Downloads

New sequencing pipeline QC

This is a database backended application for providing statistics that come out
of the Illumina/Solexa pipeline process.

This is an MVC-style application in Perl using the ClearPress framework.


cgi-bin/                   Basic CGI
data/                      TT2 templates, application config file
htdocs/                    CSS, javascript, graphics
lib/api/                   Web API
lib/model/                 Data model
lib/view/                  Application views
lib/controller.pm          Application controller
scripts/                   Database dumping & access scripts
t/                         Tests!

Downloads