Orthomyxoviridae Influenzavirus A

The Orthomyxoviridae family of viruses are segmented (8 segments, in the case of influenza A virus), negative-sense, enveloped RNA viruses, which infect vertebrate hosts. (see ICTVdB - The Universal Virus Database, version 4).

Of the viruses belonging to the family Orthomyxoviridae, influenza A virus is the most predominant cause of morbidity and mortality in humans, in which it causes respiratory illness. The natural hosts of all influenza A subtypes are wild birds, primarily those belonging to the family Anatidae (ducks, geese, and swans). Transmission of numerous subtypes to humans and other animals have been documented, but establishment of persistent infection of new subtypes in humans is rare. Apart from waterfowl and humans, transmission of influenza A is known to persist in birds of the order Galliformes, pigs, horses, and dogs.

Influenza A viruses are classified into subtypes based on the antigenic relationships of their two major surface proteins: haemagglutinin (HA), which binds to sialic acid residues on surface proteins of host cells, and induces fusion of the virus membrane with that of the host cell; and neuraminidase (NA), which cleaves sialic acid residues from surface proteins, enabling release of virus particles from host cells.

Until recently, two influenza A subtypes - H1N1 and H3N2 - persisted in humans, and caused seasonal epidemics of influenza in temperate countries, and year-round infections in humans in tropical regions. In 2009, a new variant of H1N1, distantly related to seasonal H1N1, emerged in the human population, and caused the first influenza pandemic of the 21st century - this virus is now referred to as pandemic (H1N1) 2009.

Data Downloads

This project is ongoing and data for this organism will be made available in due course.

[Genome Research Limited]

The Wellcome Trust Sanger Institute is committed to two facets of influenza A virus sequencing: whole genome sequencing; and deep amplicon sequencing.

Our influenza whole genome sequencing is funded by the Wellcome Trust, and involves collaboration with researchers at the Health Protection Agency (HPA), National Institute for Medical Research, London (NIMR), and the Veterinary Laboratories Agency (VLA). We have developed robust approaches to sequencing influenza A genomes using capillary, 454, and Illumina sequencing platforms. The role of these projects is to supplement the sequences of subgenomic genes/segments, which are rapidly generated by our collaborators, with whole genome consensus sequences.

Our deep amplicon sequencing projects are also funded by the Wellcome Trust, and involve collaborations with the Cambridge Infectious Disease Consortium (CIDC) and the Animal Health Trust, Newmarket (AHT). Rather than generating consensus sequence for the whole genome, these projects involve deep sequencing of some genes (usually HA1), to investigate changes in frequency of rare variants over time during infection, both within the period of infection of an individual and through chains of transmission.

Published Genome Data

A/California/07/2009(H1N1)

Studies

Influenza sequencing

Sample

Strain

Run Accession

001195_07UnknownERR028218
383_05UnknownERR028222
771270_95UnknownERR028223
745769_95UnknownERR028224
636804_96UnknownERR028225
17788_00UnknownERR028226
17787_00UnknownERR028227
39572_01UnknownERR028228
1131_04UnknownERR028229
33780_06UnknownERR028219
200276_92UnknownERR028220
1093_05UnknownERR028221
645913_96UnknownERR028231
100_07UnknownERR028235
303_09UnknownERR028236
90591_97UnknownERR028237
40280_96UnknownERR028238
661263_97UnknownERR028239
88761_97UnknownERR028240
61605_98UnknownERR028241
60797_00UnknownERR028242
43142_01UnknownERR028232
40564_02UnknownERR028233
71251_05UnknownERR028234
3_00UnknownERR045794
68327_98UnknownERR045795
57610_99UnknownERR045796
35320_99UnknownERR045797
254_02UnknownERR045798
010402_03UnknownERR045799
612_06UnknownERR045800
117316_86UnknownERR045801
79851_90UnknownERR045802
114065_90UnknownERR045803
2112_95UnknownERR045804
2111_95UnknownERR045805
177_02UnknownERR045806
279053_93UnknownERR045807
410711_94UnknownERR045808
0214_06UnknownERR045809
002295_02UnknownERR045810
87842_90UnknownERR045811
00003_09UnknownERR045812
375017_93UnknownERR045813
H02AS8_02UnknownERR045814
195852_92UnknownERR045815
252411_92UnknownERR045816
283902_93UnknownERR045817
167655_97UnknownERR045830
203759_92UnknownERR045831
163266_87UnknownERR045832
2899_82UnknownERR045833
425742_94UnknownERR045834
26029_98UnknownERR045835
101692_97UnknownERR045836
193667_98UnknownERR045837
448813_94UnknownERR045838
_1_02UnknownERR045839
53307_00UnknownERR045840
P185_08UnknownERR045841
89_96UnknownERR045818
1513-1_98UnknownERR045819
004772_01UnknownERR045820
145_99UnknownERR045821
285393_93UnknownERR045822
425069_94UnknownERR045823
704563_95UnknownERR045824
_7_98UnknownERR045825
790_97UnknownERR045826
ANNE_H5N1_AUnknownERR045827
ANNE_H5N1_BUnknownERR045828
ANNE_H5N1_CUnknownERR045829
1174_09H1N1ERR027058
15360-3_01H1N1ERR027062
1624_02H1N1ERR027063
800_04H1N1ERR027064
186678-2_05H1N1ERR027065
151672-3_03H1N1ERR027066
272121-1_02H1N1ERR027067
289171_03H1N1ERR027068
159870-2_05H1N1ERR027069
172336_01H1N1ERR027059
1190_02H1N1ERR027060
09_MD0040352RH1N1ERR027061
96_07H1N1ERR027045
483_06H1N1ERR027049
82108_07H1N1ERR027050
112_07H1N1ERR027051
Brno_00H1N1ERR027052
1458_10H1N1ERR027053
1_01H1N1ERR027054
29313_06H1N1ERR027055
132_05H1N1ERR027056
373_10H1N1ERR027046
10_10H1N1ERR027047
1464_10H1N1ERR027048

ICONIC

Sample

Strain

Run Accession

3034STDY5782406IC1413U087295-S00629ERR559524
3034STDY5782404IC1413U080728-S00627ERR559523
3034STDY5782401IC1413U069083-S00624ERR559522
3034STDY5782400IC1413U069083-S00623ERR559521
3034STDY5782393IC1413U134592-S00616ERR559520
3034STDY5782388IC1413U186764-S00611ERR559519
3034STDY5782383IC1413U178837-S00606ERR559518
3034STDY5782380IC1413U194365-S00603ERR559517
3034STDY5782373IC1413U157352-S00596ERR559516
3034STDY5782367IC1413U136701-S00590ERR559515
3034STDY5782334IC1413U134083-S00565ERR559514
3034STDY5782324IC1413U112477-S00555ERR559513
3034STDY5782323IC1413U115604-S00554ERR559512
3034STDY5782322IC1413U112299-S00553ERR559511
3034STDY5782318IC1413U108226-S00549ERR559510
3034STDY5782314IC1413U104208-S00545ERR559509
3034STDY5782312IC1413U080722-S00543ERR559508
3034STDY5782311IC1413U080720-S00542ERR559507
3034STDY5782309IC1413U056533-S00540ERR559506
3034STDY5782305IC1413U021134-S00536ERR559505
3034STDY5782301IC1412u734886-S00532ERR559504
3034STDY5782300IC1413U087087-S00531ERR559503
3034STDY5782299IC1413U003110-S00530ERR559502
3034STDY5782281IC1413U094324-S00512ERR559501
3034STDY5782280IC1413U085100-S00511ERR559500
3034STDY5782279IC1413U094809-S00510ERR559499
3034STDY5782270IC1413U094117-S00501ERR559498
3034STDY5782261IC1413U069884-S00500ERR559497
3034STDY5782260IC1413U069882-S00499ERR559496
3034STDY5782259IC1413U067912-S00498ERR559495
3034STDY5782257IC1413U067701-S00496ERR559494
3034STDY5782255IC1413U067520-S00494ERR559493
3034STDY5782254IC1413U067247-S00493ERR559492
3034STDY5782251IC1413U067142-S00490ERR559491
3034STDY5782250IC1413U061429-S00489ERR559490
3034STDY5782249IC1413U061412-S00488ERR559489
3034STDY5782245IC1413U003089-S00484ERR559488
3034STDY5782242IC1413U042965-S00481ERR559487
3034STDY5782241IC1413U042961-S00480ERR559486
3034STDY5782240IC1413U040077-S00479ERR559485
3034STDY5782226IC1413U104213-S00465ERR559484
3034STDY5782224IC1413U100457-S00463ERR559483
3034STDY5782223IC1413U126899-S00462ERR559482
3034STDY5782222IC1413U126827-S00461ERR559481
3034STDY5782220IC1413U127578-S00459ERR559480
3034STDY5782219IC1413U126494-S00458ERR559479
3034STDY5782217IC1413U126431-S00456ERR559478
3034STDY5782216IC1413U127683-S00455ERR559477
3034STDY5782212IC1413U087424-S00451ERR559476
3034STDY5782201IC1413U127595-S00440ERR559475
3034STDY5782200IC1413U127321-S00439ERR559474
3034STDY5782192IC1413U021019-S00431ERR559473
3034STDY5782180IC1413U037601-S00419ERR559472
3034STDY5782179IC1412U743134-S00418ERR559471
3034STDY5782177IC1412U707807-S00416ERR559470
3034STDY5782174IC1412U582556-S00413ERR559469
3034STDY5782176IC1412U707806-S00415ERR564539
3034STDY5782175IC1412U595325-S00414ERR564538
3034STDY5782502IC1413U127596-S00717ERR564518
3034STDY5782501IC1413U127320-S00716ERR564517
3034STDY5782498IC1413U112391-S00713ERR564516
3034STDY5782496IC1413U134145-S00711ERR564515
3034STDY5782495IC1413U134084-S00710ERR564514
3034STDY5782493IC1413U137158-S00708ERR564513
3034STDY5782492IC1413U115474-S00707ERR564512
3034STDY5782489IC1413U104418-S00704ERR564511
3034STDY5782486IC1413U085332-S00701ERR564510
3034STDY5782482IC1413U094802-S00697ERR564509
3034STDY5782480IC1413U094389-S00695ERR564508
3034STDY5782474IC1413U028023-S00689ERR564507
3034STDY5782472IC1413U028024-S00687ERR564506
3034STDY5782466IC1412U004384-S00681ERR564505
3034STDY5782468IC1413U020719-S00683ERR569357
3034STDY5782467IC1413U021324-S00682ERR569356
3034STDY5782465IC1413U104048-S00680ERR569355
3034STDY5782464IC1413U126829-S00679ERR569354
3034STDY5782485IC1413U094897-S00700ERR569370
3034STDY5782484IC1413U067482-S00699ERR569369
3034STDY5782483IC1413U085169-S00698ERR569368
3034STDY5782481IC1413U094172-S00696ERR569367
3034STDY5782479IC1413U067241-S00694ERR569366
3034STDY5782478IC1413U040193-S00693ERR569365
3034STDY5782477IC1413U040114-S00692ERR569364
3034STDY5782476IC1413U042729-S00691ERR569363
3034STDY5782475IC1413U028188-S00690ERR569362
3034STDY5782473IC1413U025980-S00688ERR569361
3034STDY5782471IC1413U028013-S00686ERR569360
3034STDY5782470IC1413U021796-S00685ERR569359
3034STDY5782469IC1413U021525-S00684ERR569358
3034STDY5782500IC1413U003023-S00715ERR569378
3034STDY5782499IC1413U127696-S00714ERR569377
3034STDY5782497IC1413U112390-S00712ERR569376
3034STDY5782494IC1413U137149-S00709ERR569375
3034STDY5782491IC1413U112317-S00706ERR569374
3034STDY5782490IC1413U104488-S00705ERR569373
3034STDY5782488IC1413U108223-S00703ERR569372
3034STDY5782487IC1413U108064-S00702ERR569371
3034STDY5782463IC1413U127640-S00678ERR569353
3034STDY5782462IC1413U126492-S00677ERR569352
3034STDY5782291IC1413U067142-S00522ERR569431
3034STDY5782290IC1413U061359-S00521ERR569430
3034STDY5782289IC1413U094894-S00520ERR569429
3034STDY5782288IC1413U085171-S00519ERR569428
3034STDY5782287IC1413U085170-S00518ERR569427
3034STDY5782286IC1413U085167-S00517ERR569426
3034STDY5782274IC1413U094285-S00505ERR569417
3034STDY5782336IC1413U134151-S00567ERR569462
3034STDY5782335IC1413U134086-S00566ERR569461
3034STDY5782333IC1413U137157-S00564ERR569460
3034STDY5782332IC1413U137160-S00563ERR569459
3034STDY5782331IC1413U112922-S00562ERR569458
3034STDY5782330IC1413U134037-S00561ERR569457
3034STDY5782329IC1413U134039-S00560ERR569456
3034STDY5782328IC1413U106571-S00559ERR569455
3034STDY5782327IC1413U112151-S00558ERR569454
3034STDY5782326IC1413U109779-S00557ERR569453
3034STDY5782325IC1413U112620-S00556ERR569452
3034STDY5782321IC1413U108611-S00552ERR569451
3034STDY5782320IC1413U194772-S00551ERR569450
3034STDY5782319IC1413U104424-S00550ERR569449
3034STDY5782317IC1413U108221-S00548ERR569448
3034STDY5782316IC1413U108177-S00547ERR569447
3034STDY5782315IC1413U104207-S00546ERR569446
3034STDY5782313IC1413U080728-S00544ERR569445
3034STDY5782310IC1413U080724-S00541ERR569444
3034STDY5782308IC1413U056517-S00539ERR569443
3034STDY5782307IC1413U021191-S00538ERR569442
3034STDY5782304IC1412U728909-S00535ERR569441
3034STDY5782303IC1412U728852-S00534ERR569440
3034STDY5782302IC1412U734882-S00533ERR569439
3034STDY5782298IC1413U085289-S00529ERR569438
3034STDY5782297IC1413U094994-S00528ERR569437
3034STDY5782296IC1413U067625-S00527ERR569436
3034STDY5782295IC1413U067573-S00526ERR569435
3034STDY5782294IC1413U067413-S00525ERR569434
3034STDY5782293IC1413U069318-S00524ERR569433
3034STDY5782292IC1413U069319-S00523ERR569432
3034STDY5782277IC1413U094695-S00508ERR569420
3034STDY5782276IC1413U092633-S00507ERR569419
3034STDY5782275IC1413U094324-S00506ERR569418
3034STDY5782347IC1413U177795-S00578ERR569473
3034STDY5782346IC1413U170296-S00577ERR569472
3034STDY5782345IC1413U177144-S00576ERR569471
3034STDY5782344IC1413U140350-S00575ERR569470
3034STDY5782343IC1413U057216-S00574ERR569469
3034STDY5782342IC1413U137345-S00573ERR569468
3034STDY5782341IC1413U137252-S00572ERR569467
3034STDY5782340IC1413U134418-S00571ERR569466
3034STDY5782339IC1413U104747-S00570ERR569465
3034STDY5782338IC1413U127626-S00569ERR569464
3034STDY5782337IC1413U085964-S00568ERR569463
3034STDY5782285IC1413U085166-S00516ERR569425
3034STDY5782284IC1413U085162-S00515ERR569424
3034STDY5782283IC1413U085158-S00514ERR569423
3034STDY5782282IC1413U003110-S00513ERR569422
3034STDY5782278IC1413U094805-S00509ERR569421
3034STDY5782405IC1413U127321-S00628ERR571077
3034STDY5782403IC1413U080722-S00626ERR571076
3034STDY5782402IC1413U080720-S00625ERR571075
3034STDY5782399IC1412U719277-S00622ERR571074
3034STDY5782398IC1412U619567-S00621ERR571073
3034STDY5782397IC1413U194618-S00620ERR571072
3034STDY5782396IC1412U534786-S00619ERR571071
3034STDY5782395IC1413U156193-S00618ERR571070
3034STDY5782394IC1413U104880-S00617ERR571069
3034STDY5782392IC1413U185788-S00615ERR571068
3034STDY5782391IC1413U194528-S00614ERR571067
3034STDY5782390IC1413U165550-S00613ERR571066
3034STDY5782389IC1413U170261-S00612ERR571065
3034STDY5782387IC1413U137783-S00610ERR571064
3034STDY5782386IC1413U185652-S00609ERR571063
3034STDY5782385IC1413U186021-S00608ERR571062
3034STDY5782384IC1412U561074-S00607ERR571061
3034STDY5782382IC1413U186476-S00605ERR571060
3034STDY5782381IC1413U085962-S00604ERR571059
3034STDY5782379IC1413U177707-S00602ERR571058
3034STDY5782378IC1413U140310-S00601ERR569416
3034STDY5782377IC1413U185533-S00600ERR569415
3034STDY5782376IC1413U170265-S00599ERR569414
3034STDY5782375IC1413U186022-S00598ERR569413
3034STDY5782374IC1412U704130-S00597ERR569412
3034STDY5782372IC1413U194802-S00595ERR569411
3034STDY5782371IC1412U707911-S00594ERR569410
3034STDY5782370IC1413U003258-S00593ERR569409
3034STDY5782369IC1413U003257-S00592ERR569408
3034STDY5782368IC1413U177243-S00591ERR569407
3034STDY5782366IC1413U153125-S00589ERR569406
3034STDY5782357IC1413U136915-S00588ERR569405
3034STDY5782351IC1413U156097-S00582ERR571052
3034STDY5782350IC1413U153115-S00581ERR571051
3034STDY5782349IC1413U186814-S00580ERR569404
3034STDY5782348IC1413U153191-S00579ERR569403
3034STDY5782356IC1413U170143-S00587ERR571057
3034STDY5782355IC1413U194534-S00586ERR571056
3034STDY5782354IC1413U003244-S00585ERR571055
3034STDY5782353IC1413U170289-S00584ERR571054
3034STDY5782352IC1413U170262-S00583ERR571053
3034STDY5782248IC1413U061359-S00487ERR571145
3034STDY5782247IC1413U003087-S00486ERR571144
3034STDY5782246IC1413U003083-S00485ERR571143
3034STDY5782244IC1413U040644-S00483ERR571142
3034STDY5782243IC1413U040645-S00482ERR571141
3034STDY5782239IC1413U042965-S00478ERR571140
3034STDY5782238IC1413U037985-S00477ERR571139
3034STDY5782237IC1413U037625-S00476ERR571138
3034STDY5782236IC1413U037618-S00475ERR571137
3034STDY5782235IC1413U037615-S00474ERR571136
3034STDY5782234IC1413U037653-S00473ERR571135
3034STDY5782233IC1413U037651-S00472ERR571134
3034STDY5782232IC1413U042023-S00471ERR571133
3034STDY5782231IC1413U028014-S00470ERR571132
3034STDY5782230IC1413U020613-S00469ERR571131
3034STDY5782229IC1413U021327-S00468ERR571130
3034STDY5782228IC1412U707911-S00467ERR571129
3034STDY5782227IC1412U728057-S00466ERR571128
3034STDY5782225IC1413U100783-S00464ERR571127
3034STDY5782221IC1413U127579-S00460ERR571126
3034STDY5782218IC1413U126430-S00457ERR571125
3034STDY5782215IC1413U127681-S00454ERR571124
3034STDY5782214IC1413U126243-S00453ERR571123
3034STDY5782213IC1413U127642-S00452ERR571122
3034STDY5782211IC1413U087295-S00450ERR571121
3034STDY5782210IC1413U085576-S00449ERR571120
3034STDY5782209IC1413U085582-S00448ERR571119
3034STDY5782208IC1413U085577-S00447ERR571118
3034STDY5782207IC1413U108543-S00446ERR571117
3034STDY5782206IC1413U126827-S00445ERR571116
3034STDY5782205IC1413U108561-S00444ERR571115
3034STDY5782204IC1413U104604-S00443ERR571114
3034STDY5782203IC1413U104748-S00442ERR571113
3034STDY5782202IC1413U127592-S00441ERR571112
3034STDY5782199IC1413U085646-S00438ERR571111
3034STDY5782198IC1413U087721-S00437ERR571110
3034STDY5782197IC1413U085700-S00436ERR571109
3034STDY5782196IC1413U087974-S00435ERR571108
3034STDY5782195IC1413U085779-S00434ERR571107
3034STDY5782194IC1413U087993-S00433ERR571106
3034STDY5782193IC1413U087981-S00432ERR571105
3034STDY5782191IC1413U085171-S00430ERR571104
3034STDY5782184IC1413U061950-S00423ERR571099
3034STDY5782183IC1413U061709-S00422ERR571098
3034STDY5782182IC1413U061454-S00421ERR571097
3034STDY5782181IC1413U056994-S00420ERR571096
3034STDY5782178IC1412U736722-S00417ERR571095
3034STDY5782273IC1413U094326-S00504ERR571151
3034STDY5782272IC1413U094388-S00503ERR571150
3034STDY5782271IC1413U094122-S00502ERR571149
3034STDY5782258IC1413U067912-S00497ERR571148
3034STDY5782256IC1413U069460-S00495ERR571147
3034STDY5782252IC1413U061704-S00491ERR571146
3034STDY5782190IC1413U094158-S00429ERR571103
3034STDY5782189IC1413U069319-S00428ERR571102
3034STDY5782187IC1413U069139-S00426ERR571101
3034STDY5782185IC1413U061953-S00424ERR571100
3034STDY5862689IC1414u083909-S00244ERR656517
3034STDY5862688IC1414u005213-S00243ERR656516
3034STDY5862687IC1414u005210-S00242ERR656515
3034STDY5862686IC1414u083421-S00241ERR656514
3034STDY5862685IC1414u087519-S00240ERR656513
3034STDY5862684IC1414u087127-S00239ERR656512
3034STDY5862683IC1414u063648-S00238ERR656511
3034STDY5862682IC1414u005215-S00237ERR656510
3034STDY5862681IC1414u063517-S00236ERR656509
3034STDY5862680IC1414u168177-S00235ERR656508
3034STDY5862679IC1414u195968-S00234ERR656507
3034STDY5862678IC1414u063350-S00233ERR656506
3034STDY5862677IC1414u177905-S00232ERR656505
3034STDY5862676IC1414u177903-S00231ERR656504
3034STDY5862675IC1414u061967-S00230ERR656503
3034STDY5862674IC1414u071745-S00229ERR656502
3034STDY5862673IC1414u071693-S00228ERR656501
3034STDY5862672IC1414u071485-S00227ERR656500
3034STDY5862671IC1414u071484-S00226ERR656499
3034STDY5862670IC1414u155755-S00225ERR656498
3034STDY5862669IC1414u155725-S00224ERR656497
3034STDY5862668IC1414u157933-S00223ERR656496
3034STDY5862667IC1414u005175-S00222ERR656495
3034STDY5862666IC1414u157942-S00221ERR656494
3034STDY5862665IC1414u157805-S00220ERR656493
3034STDY5862664IC1414u157787-S00219ERR656492
3034STDY5862663IC1414u135947-S00218ERR656491
3034STDY5862662IC1414u135945-S00217ERR656490
3034STDY5862661IC1414u107292-S00216ERR656489
3034STDY5862660IC1414u107074-S00215ERR656488
3034STDY5862659IC1414u128918-S00214ERR656487
3034STDY5862658IC1414u107081-S00213ERR656486

ICONIC

Sample

Strain

Run Accession

3034STDY5782406IC1413U087295-S00629ERR559524
3034STDY5782404IC1413U080728-S00627ERR559523
3034STDY5782401IC1413U069083-S00624ERR559522
3034STDY5782400IC1413U069083-S00623ERR559521
3034STDY5782393IC1413U134592-S00616ERR559520
3034STDY5782388IC1413U186764-S00611ERR559519
3034STDY5782383IC1413U178837-S00606ERR559518
3034STDY5782380IC1413U194365-S00603ERR559517
3034STDY5782373IC1413U157352-S00596ERR559516
3034STDY5782367IC1413U136701-S00590ERR559515
3034STDY5782334IC1413U134083-S00565ERR559514
3034STDY5782324IC1413U112477-S00555ERR559513
3034STDY5782323IC1413U115604-S00554ERR559512
3034STDY5782322IC1413U112299-S00553ERR559511
3034STDY5782318IC1413U108226-S00549ERR559510
3034STDY5782314IC1413U104208-S00545ERR559509
3034STDY5782312IC1413U080722-S00543ERR559508
3034STDY5782311IC1413U080720-S00542ERR559507
3034STDY5782309IC1413U056533-S00540ERR559506
3034STDY5782305IC1413U021134-S00536ERR559505
3034STDY5782301IC1412u734886-S00532ERR559504
3034STDY5782300IC1413U087087-S00531ERR559503
3034STDY5782299IC1413U003110-S00530ERR559502
3034STDY5782281IC1413U094324-S00512ERR559501
3034STDY5782280IC1413U085100-S00511ERR559500
3034STDY5782279IC1413U094809-S00510ERR559499
3034STDY5782270IC1413U094117-S00501ERR559498
3034STDY5782261IC1413U069884-S00500ERR559497
3034STDY5782260IC1413U069882-S00499ERR559496
3034STDY5782259IC1413U067912-S00498ERR559495
3034STDY5782257IC1413U067701-S00496ERR559494
3034STDY5782255IC1413U067520-S00494ERR559493
3034STDY5782254IC1413U067247-S00493ERR559492
3034STDY5782251IC1413U067142-S00490ERR559491
3034STDY5782250IC1413U061429-S00489ERR559490
3034STDY5782249IC1413U061412-S00488ERR559489
3034STDY5782245IC1413U003089-S00484ERR559488
3034STDY5782242IC1413U042965-S00481ERR559487
3034STDY5782241IC1413U042961-S00480ERR559486
3034STDY5782240IC1413U040077-S00479ERR559485
3034STDY5782226IC1413U104213-S00465ERR559484
3034STDY5782224IC1413U100457-S00463ERR559483
3034STDY5782223IC1413U126899-S00462ERR559482
3034STDY5782222IC1413U126827-S00461ERR559481
3034STDY5782220IC1413U127578-S00459ERR559480
3034STDY5782219IC1413U126494-S00458ERR559479
3034STDY5782217IC1413U126431-S00456ERR559478
3034STDY5782216IC1413U127683-S00455ERR559477
3034STDY5782212IC1413U087424-S00451ERR559476
3034STDY5782201IC1413U127595-S00440ERR559475
3034STDY5782200IC1413U127321-S00439ERR559474
3034STDY5782192IC1413U021019-S00431ERR559473
3034STDY5782180IC1413U037601-S00419ERR559472
3034STDY5782179IC1412U743134-S00418ERR559471
3034STDY5782177IC1412U707807-S00416ERR559470
3034STDY5782174IC1412U582556-S00413ERR559469
3034STDY5782176IC1412U707806-S00415ERR564539
3034STDY5782175IC1412U595325-S00414ERR564538
3034STDY5782502IC1413U127596-S00717ERR564518
3034STDY5782501IC1413U127320-S00716ERR564517
3034STDY5782498IC1413U112391-S00713ERR564516
3034STDY5782496IC1413U134145-S00711ERR564515
3034STDY5782495IC1413U134084-S00710ERR564514
3034STDY5782493IC1413U137158-S00708ERR564513
3034STDY5782492IC1413U115474-S00707ERR564512
3034STDY5782489IC1413U104418-S00704ERR564511
3034STDY5782486IC1413U085332-S00701ERR564510
3034STDY5782482IC1413U094802-S00697ERR564509
3034STDY5782480IC1413U094389-S00695ERR564508
3034STDY5782474IC1413U028023-S00689ERR564507
3034STDY5782472IC1413U028024-S00687ERR564506
3034STDY5782466IC1412U004384-S00681ERR564505
3034STDY5782468IC1413U020719-S00683ERR569357
3034STDY5782467IC1413U021324-S00682ERR569356
3034STDY5782465IC1413U104048-S00680ERR569355
3034STDY5782464IC1413U126829-S00679ERR569354
3034STDY5782485IC1413U094897-S00700ERR569370
3034STDY5782484IC1413U067482-S00699ERR569369
3034STDY5782483IC1413U085169-S00698ERR569368
3034STDY5782481IC1413U094172-S00696ERR569367
3034STDY5782479IC1413U067241-S00694ERR569366
3034STDY5782478IC1413U040193-S00693ERR569365
3034STDY5782477IC1413U040114-S00692ERR569364
3034STDY5782476IC1413U042729-S00691ERR569363
3034STDY5782475IC1413U028188-S00690ERR569362
3034STDY5782473IC1413U025980-S00688ERR569361
3034STDY5782471IC1413U028013-S00686ERR569360
3034STDY5782470IC1413U021796-S00685ERR569359
3034STDY5782469IC1413U021525-S00684ERR569358
3034STDY5782500IC1413U003023-S00715ERR569378
3034STDY5782499IC1413U127696-S00714ERR569377
3034STDY5782497IC1413U112390-S00712ERR569376
3034STDY5782494IC1413U137149-S00709ERR569375
3034STDY5782491IC1413U112317-S00706ERR569374
3034STDY5782490IC1413U104488-S00705ERR569373
3034STDY5782488IC1413U108223-S00703ERR569372
3034STDY5782487IC1413U108064-S00702ERR569371
3034STDY5782463IC1413U127640-S00678ERR569353
3034STDY5782462IC1413U126492-S00677ERR569352
3034STDY5782291IC1413U067142-S00522ERR569431
3034STDY5782290IC1413U061359-S00521ERR569430
3034STDY5782289IC1413U094894-S00520ERR569429
3034STDY5782288IC1413U085171-S00519ERR569428
3034STDY5782287IC1413U085170-S00518ERR569427
3034STDY5782286IC1413U085167-S00517ERR569426
3034STDY5782274IC1413U094285-S00505ERR569417
3034STDY5782336IC1413U134151-S00567ERR569462
3034STDY5782335IC1413U134086-S00566ERR569461
3034STDY5782333IC1413U137157-S00564ERR569460
3034STDY5782332IC1413U137160-S00563ERR569459
3034STDY5782331IC1413U112922-S00562ERR569458
3034STDY5782330IC1413U134037-S00561ERR569457
3034STDY5782329IC1413U134039-S00560ERR569456
3034STDY5782328IC1413U106571-S00559ERR569455
3034STDY5782327IC1413U112151-S00558ERR569454
3034STDY5782326IC1413U109779-S00557ERR569453
3034STDY5782325IC1413U112620-S00556ERR569452
3034STDY5782321IC1413U108611-S00552ERR569451
3034STDY5782320IC1413U194772-S00551ERR569450
3034STDY5782319IC1413U104424-S00550ERR569449
3034STDY5782317IC1413U108221-S00548ERR569448
3034STDY5782316IC1413U108177-S00547ERR569447
3034STDY5782315IC1413U104207-S00546ERR569446
3034STDY5782313IC1413U080728-S00544ERR569445
3034STDY5782310IC1413U080724-S00541ERR569444
3034STDY5782308IC1413U056517-S00539ERR569443
3034STDY5782307IC1413U021191-S00538ERR569442
3034STDY5782304IC1412U728909-S00535ERR569441
3034STDY5782303IC1412U728852-S00534ERR569440
3034STDY5782302IC1412U734882-S00533ERR569439
3034STDY5782298IC1413U085289-S00529ERR569438
3034STDY5782297IC1413U094994-S00528ERR569437
3034STDY5782296IC1413U067625-S00527ERR569436
3034STDY5782295IC1413U067573-S00526ERR569435
3034STDY5782294IC1413U067413-S00525ERR569434
3034STDY5782293IC1413U069318-S00524ERR569433
3034STDY5782292IC1413U069319-S00523ERR569432
3034STDY5782277IC1413U094695-S00508ERR569420
3034STDY5782276IC1413U092633-S00507ERR569419
3034STDY5782275IC1413U094324-S00506ERR569418
3034STDY5782347IC1413U177795-S00578ERR569473
3034STDY5782346IC1413U170296-S00577ERR569472
3034STDY5782345IC1413U177144-S00576ERR569471
3034STDY5782344IC1413U140350-S00575ERR569470
3034STDY5782343IC1413U057216-S00574ERR569469
3034STDY5782342IC1413U137345-S00573ERR569468
3034STDY5782341IC1413U137252-S00572ERR569467
3034STDY5782340IC1413U134418-S00571ERR569466
3034STDY5782339IC1413U104747-S00570ERR569465
3034STDY5782338IC1413U127626-S00569ERR569464
3034STDY5782337IC1413U085964-S00568ERR569463
3034STDY5782285IC1413U085166-S00516ERR569425
3034STDY5782284IC1413U085162-S00515ERR569424
3034STDY5782283IC1413U085158-S00514ERR569423
3034STDY5782282IC1413U003110-S00513ERR569422
3034STDY5782278IC1413U094805-S00509ERR569421
3034STDY5782405IC1413U127321-S00628ERR571077
3034STDY5782403IC1413U080722-S00626ERR571076
3034STDY5782402IC1413U080720-S00625ERR571075
3034STDY5782399IC1412U719277-S00622ERR571074
3034STDY5782398IC1412U619567-S00621ERR571073
3034STDY5782397IC1413U194618-S00620ERR571072
3034STDY5782396IC1412U534786-S00619ERR571071
3034STDY5782395IC1413U156193-S00618ERR571070
3034STDY5782394IC1413U104880-S00617ERR571069
3034STDY5782392IC1413U185788-S00615ERR571068
3034STDY5782391IC1413U194528-S00614ERR571067
3034STDY5782390IC1413U165550-S00613ERR571066
3034STDY5782389IC1413U170261-S00612ERR571065
3034STDY5782387IC1413U137783-S00610ERR571064
3034STDY5782386IC1413U185652-S00609ERR571063
3034STDY5782385IC1413U186021-S00608ERR571062
3034STDY5782384IC1412U561074-S00607ERR571061
3034STDY5782382IC1413U186476-S00605ERR571060
3034STDY5782381IC1413U085962-S00604ERR571059
3034STDY5782379IC1413U177707-S00602ERR571058
3034STDY5782378IC1413U140310-S00601ERR569416
3034STDY5782377IC1413U185533-S00600ERR569415
3034STDY5782376IC1413U170265-S00599ERR569414
3034STDY5782375IC1413U186022-S00598ERR569413
3034STDY5782374IC1412U704130-S00597ERR569412
3034STDY5782372IC1413U194802-S00595ERR569411
3034STDY5782371IC1412U707911-S00594ERR569410
3034STDY5782370IC1413U003258-S00593ERR569409
3034STDY5782369IC1413U003257-S00592ERR569408
3034STDY5782368IC1413U177243-S00591ERR569407
3034STDY5782366IC1413U153125-S00589ERR569406
3034STDY5782357IC1413U136915-S00588ERR569405
3034STDY5782351IC1413U156097-S00582ERR571052
3034STDY5782350IC1413U153115-S00581ERR571051
3034STDY5782349IC1413U186814-S00580ERR569404
3034STDY5782348IC1413U153191-S00579ERR569403
3034STDY5782356IC1413U170143-S00587ERR571057
3034STDY5782355IC1413U194534-S00586ERR571056
3034STDY5782354IC1413U003244-S00585ERR571055
3034STDY5782353IC1413U170289-S00584ERR571054
3034STDY5782352IC1413U170262-S00583ERR571053
3034STDY5782248IC1413U061359-S00487ERR571145
3034STDY5782247IC1413U003087-S00486ERR571144
3034STDY5782246IC1413U003083-S00485ERR571143
3034STDY5782244IC1413U040644-S00483ERR571142
3034STDY5782243IC1413U040645-S00482ERR571141
3034STDY5782239IC1413U042965-S00478ERR571140
3034STDY5782238IC1413U037985-S00477ERR571139
3034STDY5782237IC1413U037625-S00476ERR571138
3034STDY5782236IC1413U037618-S00475ERR571137
3034STDY5782235IC1413U037615-S00474ERR571136
3034STDY5782234IC1413U037653-S00473ERR571135
3034STDY5782233IC1413U037651-S00472ERR571134
3034STDY5782232IC1413U042023-S00471ERR571133
3034STDY5782231IC1413U028014-S00470ERR571132
3034STDY5782230IC1413U020613-S00469ERR571131
3034STDY5782229IC1413U021327-S00468ERR571130
3034STDY5782228IC1412U707911-S00467ERR571129
3034STDY5782227IC1412U728057-S00466ERR571128
3034STDY5782225IC1413U100783-S00464ERR571127
3034STDY5782221IC1413U127579-S00460ERR571126
3034STDY5782218IC1413U126430-S00457ERR571125
3034STDY5782215IC1413U127681-S00454ERR571124
3034STDY5782214IC1413U126243-S00453ERR571123
3034STDY5782213IC1413U127642-S00452ERR571122
3034STDY5782211IC1413U087295-S00450ERR571121
3034STDY5782210IC1413U085576-S00449ERR571120
3034STDY5782209IC1413U085582-S00448ERR571119
3034STDY5782208IC1413U085577-S00447ERR571118
3034STDY5782207IC1413U108543-S00446ERR571117
3034STDY5782206IC1413U126827-S00445ERR571116
3034STDY5782205IC1413U108561-S00444ERR571115
3034STDY5782204IC1413U104604-S00443ERR571114
3034STDY5782203IC1413U104748-S00442ERR571113
3034STDY5782202IC1413U127592-S00441ERR571112
3034STDY5782199IC1413U085646-S00438ERR571111
3034STDY5782198IC1413U087721-S00437ERR571110
3034STDY5782197IC1413U085700-S00436ERR571109
3034STDY5782196IC1413U087974-S00435ERR571108
3034STDY5782195IC1413U085779-S00434ERR571107
3034STDY5782194IC1413U087993-S00433ERR571106
3034STDY5782193IC1413U087981-S00432ERR571105
3034STDY5782191IC1413U085171-S00430ERR571104
3034STDY5782184IC1413U061950-S00423ERR571099
3034STDY5782183IC1413U061709-S00422ERR571098
3034STDY5782182IC1413U061454-S00421ERR571097
3034STDY5782181IC1413U056994-S00420ERR571096
3034STDY5782178IC1412U736722-S00417ERR571095
3034STDY5782273IC1413U094326-S00504ERR571151
3034STDY5782272IC1413U094388-S00503ERR571150
3034STDY5782271IC1413U094122-S00502ERR571149
3034STDY5782258IC1413U067912-S00497ERR571148
3034STDY5782256IC1413U069460-S00495ERR571147
3034STDY5782252IC1413U061704-S00491ERR571146
3034STDY5782190IC1413U094158-S00429ERR571103
3034STDY5782189IC1413U069319-S00428ERR571102
3034STDY5782187IC1413U069139-S00426ERR571101
3034STDY5782185IC1413U061953-S00424ERR571100
3034STDY5862689IC1414u083909-S00244ERR656517
3034STDY5862688IC1414u005213-S00243ERR656516
3034STDY5862687IC1414u005210-S00242ERR656515
3034STDY5862686IC1414u083421-S00241ERR656514
3034STDY5862685IC1414u087519-S00240ERR656513
3034STDY5862684IC1414u087127-S00239ERR656512
3034STDY5862683IC1414u063648-S00238ERR656511
3034STDY5862682IC1414u005215-S00237ERR656510
3034STDY5862681IC1414u063517-S00236ERR656509
3034STDY5862680IC1414u168177-S00235ERR656508
3034STDY5862679IC1414u195968-S00234ERR656507
3034STDY5862678IC1414u063350-S00233ERR656506
3034STDY5862677IC1414u177905-S00232ERR656505
3034STDY5862676IC1414u177903-S00231ERR656504
3034STDY5862675IC1414u061967-S00230ERR656503
3034STDY5862674IC1414u071745-S00229ERR656502
3034STDY5862673IC1414u071693-S00228ERR656501
3034STDY5862672IC1414u071485-S00227ERR656500
3034STDY5862671IC1414u071484-S00226ERR656499
3034STDY5862670IC1414u155755-S00225ERR656498
3034STDY5862669IC1414u155725-S00224ERR656497
3034STDY5862668IC1414u157933-S00223ERR656496
3034STDY5862667IC1414u005175-S00222ERR656495
3034STDY5862666IC1414u157942-S00221ERR656494
3034STDY5862665IC1414u157805-S00220ERR656493
3034STDY5862664IC1414u157787-S00219ERR656492
3034STDY5862663IC1414u135947-S00218ERR656491
3034STDY5862662IC1414u135945-S00217ERR656490
3034STDY5862661IC1414u107292-S00216ERR656489
3034STDY5862660IC1414u107074-S00215ERR656488
3034STDY5862659IC1414u128918-S00214ERR656487
3034STDY5862658IC1414u107081-S00213ERR656486
  • Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans.

    Garten RJ, Davis CT, Russell CA, Shu B, Lindstrom S, Balish A, Sessions WM, Xu X, Skepner E, Deyde V, Okomo-Adhiambo M, Gubareva L, Barnes J, Smith CB, Emery SL, Hillman MJ, Rivailler P, Smagala J, de Graaf M, Burke DF, Fouchier RA, Pappas C, Alpuche-Aranda CM, López-Gatell H, Olivera H, López I, Myers CA, Faix D, Blair PJ, Yu C, Keene KM, Dotson PD, Boxrud D, Sambol AR, Abid SH, St George K, Bannerman T, Moore AL, Stringer DJ, Blevins P, Demmler-Harrison GJ, Ginsberg M, Kriner P, Waterman S, Smole S, Guevara HF, Belongia EA, Clark PA, Beatrice ST, Donis R, Katz J, Finelli L, Bridges CB, Shaw M, Jernigan DB, Uyeki TM, Smith DJ, Klimov AI and Cox NJ

    Science (New York, N.Y.) 2009;325;5937;197-201

  • Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

    Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y and Rambaut A

    Nature 2009;459;7250;1122-5

  • Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.

    Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblyum T, Subbu V, Spiro DJ, Sitz J, Koo H, Bolotov P, Dernovoy D, Tatusova T, Bao Y, St George K, Taylor J, Lipman DJ, Fraser CM, Taubenberger JK and Salzberg SL

    Nature 2005;437;7062;1162-6

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/qu979ra6