The Wellcome Trust Sanger Institute Pathogen Genomics group is undertaking whole genome shotgun sequencing of a number of different species of Plasmodium. This will serve as a useful comparative genomics resource to complement the complete Plasmodium falciparum genome.
Published Genome Data
We are in the process of generating a whole genome shotgun to approximately 8X coverage, of the Nigeria I/CDC strain of P. ovale. The Nigeria I/CDC strain was isolated in 1977 from a Peace Corps worker who was stationed in Nigeria.
P. ovale has an estimated genome size of 25-27Mb, with 14 chromosomes in the size range of 0.6 Mb to 3.8 Mb.
This work is being done in collaboration with Dr John Barnwell (CDC, Atlanta).
Studies
Whole genome sequencing of P. ovale reference genomes (classical and the variant type).
Sample | Strain | Run Accession |
|---|---|---|
| PO | Unknown | ERR019416 |
| PO | Unknown | ERR019419 |
| PO | Unknown | ERR019415 |
| PO | Unknown | ERR019418 |
| PO | Unknown | ERR019417 |
| PO | Unknown | ERR019420 |
| PO | Unknown | ERR019421 |
Genome diversity of P. ovale human clinical isolates (both classical type and the variant type)
Sample | Strain | Run Accession |
|---|---|---|
| OX009_gDNA | Unknown | ERR022003 |
| OX008_gDNA | Unknown | ERR037231 |
| OX008_gDNA | Unknown | ERR022002 |
| OX011_gDNA | Unknown | ERR019303 |
| OX012B_gDNA | Unknown | ERR019304 |

