Production of a high quality reference sequence has been attempted from multiple sources of P. ovale DNA. Using the Nigeria I/CDC strain (isolated in 1977 from a Peace Corps worker in Nigeria), provided by John Barnwell (CDC, Atlanta), a low coverage draft has been produced using Sanger sequencing. Further sequencing has been attempted using DNA provided by Colin Sutherland.
Further sequencing and full annotation is planned. We would welcome any source of high quality DNA.
Studies
Whole genome sequencing of P. ovale reference genomes (classical and the variant type).
Sample | Strain | Run Accession |
|---|---|---|
| PO | Unknown | ERR019416 |
| PO | Unknown | ERR019419 |
| PO | Unknown | ERR019415 |
| PO | Unknown | ERR019418 |
| PO | Unknown | ERR019417 |
| PO | Unknown | ERR019420 |
| PO | Unknown | ERR019421 |
Genome diversity of P. ovale human clinical isolates (both classical type and the variant type)
Sample | Strain | Run Accession |
|---|---|---|
| OX009_gDNA | Unknown | ERR022003 |
| OX008_gDNA | Unknown | ERR037231 |
| OX008_gDNA | Unknown | ERR022002 |
| OX011_gDNA | Unknown | ERR019303 |
| OX012B_gDNA | Unknown | ERR019304 |


