Plasmodium falciparum

Plasmodium falciparum is the deadliest of five human malaria species and responsible for the majority of malaria related deaths. There are around 300 million clinical cases occur each year resulting in at least one million deaths annually, predominantly in sub-saharan Africa. An estimated 3,000 children, under the age of five, fall victim to malaria each day and around 40% of the worlds population are at risk of infection.

Data Downloads

[Genome Research Limited]

The canonical reference P. falciparum clone 3D7 was first published by Gardner et al. in 2002. The nuclear genome was described as 22.9 Mb and essentially complete, with 14 chromosomes, a G+C content of approximately 19%, 5268 genes and approximately 80 gaps.

Genome improvement of P. falciparum 3D7

Since publication efforts have continued to improve both the sequence and annotation. The latest annotation is continually updated in GeneDB and used to periodically update PlasmoDB. A complete telomere-to-telomere sequence is in preparation that includes full assessment of accuracy using REAPR (Hunt et al). The current version (v3.0) has 5369 genes, some re-assembled regions of chromosomes 7, 8 and 13, comprehensive reannotation and no gaps. A publication describing the complete methodology and important changes is in preparation. Please refer to Data Use Statement.

Other P. falciparum sequencing projects

A draft sequence of P. falciparum IT clone was produced using Sanger sequencing (funded as a component of the BioMalPar Consortium, European Union 6th Framework Program, Contract number LSHP-LT-2004-503578) and more recently using Illumina Sequence-by-Synthesis. An annotation of the latest version can be accessed at GeneDB and is currently unpublished. Please refer to Data Use Statement.

Large-scale resequencing of global P. falciparum isolates is being undertaken as part of the Malaria Programme.

Studies

Whole genome sequencing of Plasmodium falciparum piggyBac transposon insertional mutants

Sample

Strain

Run Accession

PB-39UnknownERR224767
PB-116UnknownERR224768
PB-119UnknownERR224769
PB-59UnknownERR224770
PB-13UnknownERR224771
PB-46UnknownERR224772
PB-48UnknownERR224773
PB-43UnknownERR224774
PB-49UnknownERR224775
PB-94UnknownERR224776
E5-Not1UnknownERR224777
NF54-mCherryUnknownERR224778
PB-69UnknownERR224779
PB-47UnknownERR224780
PB-3UnknownERR224781
PB-27UnknownERR224782
PB-79UnknownERR224783
PB-23UnknownERR224784
PB-8UnknownERR224785
PB-19UnknownERR224786
PB-32UnknownERR224787
IGM2F11UnknownERR224788
IGM2H3UnknownERR224789
IGM2E2UnknownERR224790
F3_CAF1UnknownERR224766
C9_PF13_0027UnknownERR224765
06092208UnknownERR224764
NF54UnknownERR224763
HB2UnknownERR224802
F12UnknownERR224801
IGM2F6UnknownERR224800
IGM2A9UnknownERR224799
IGM2H8UnknownERR224798
IGM2G10UnknownERR224797
IGM2G6UnknownERR224796
IGM2H12UnknownERR224795
IGM2E4UnknownERR224794
IGM2G3UnknownERR224793
IGM2D4UnknownERR224792
IGM2B4UnknownERR224791
IGM2D3UnknownERR224814
IGM1C5UnknownERR224813
IGM1B5UnknownERR224812
IGM1A2UnknownERR224811
PB-26UnknownERR224810
PB-29UnknownERR224809
PB-21UnknownERR224808
PB-30UnknownERR224807
PB-44UnknownERR224806
PB-34UnknownERR224805
PB-33UnknownERR224804
PB-14UnknownERR224803
5-Chris-C9NF54-PiggyBac MutantERR224877
5-KnMP_2NF54-PiggyBac MutantERR224876
5-PB-43NF54-PiggyBac MutantERR224875
3-Chris-C9NF54-PiggyBac MutantERR224873
3-KnMP_2NF54-PiggyBac MutantERR224872
3-PB-43NF54-PiggyBac MutantERR224871
5-NF-54_WTNF54 Wild TypeERR224870
5-Phaedra-E5NF54-PiggyBac MutantERR224869
5-KnMP_1NF54-PiggyBac MutantERR224868
5-PB-33NF54-PiggyBac MutantERR224867
3-Phaedra-E5NF54-PiggyBac MutantERR224865
3-KnMP_1NF54-PiggyBac MutantERR224864
3-PB-33NF54-PiggyBac MutantERR224863
5-Shulin-H7NF54-PiggyBac MutantERR224862
5-UknMP4-2012NF54-PiggyBac MutantERR224861
5-PB-27_PB-3NF54-PiggyBac MutantERR224860
5-PB-32NF54-PiggyBac MutantERR224859
3-Shulin-H7NF54-PiggyBac MutantERR224858
3-UknMP4-2012NF54-PiggyBac MutantERR224857
3-PB-27_PB-3NF54-PiggyBac MutantERR224856
3-PB-32NF54-PiggyBac MutantERR224855
5-Shulin-G4NF54-PiggyBac MutantERR224854
5-UknMP3-2012NF54-PiggyBac MutantERR224853
5-PB-69_PB-3NF54-PiggyBac MutantERR224852
5-PB-13NF54-PiggyBac MutantERR224851
3-Shulin-G4NF54-PiggyBac MutantERR224850
3-UknMP3-2012NF54-PiggyBac MutantERR224849
3-PB-69_PB-3NF54-PiggyBac MutantERR224848
3-PB-13NF54-PiggyBac MutantERR224847
5-Rajeev-2NF54-PiggyBac MutantERR224846
5-UknMP2-2012NF54-PiggyBac MutantERR224845
5-PB-29_PB-3NF54-PiggyBac MutantERR224844
5-PB-59NF54-PiggyBac MutantERR224843
3-Rajeev-2NF54-PiggyBac MutantERR224842
3-UknMP2-2012NF54-PiggyBac MutantERR224841
3-PB-29_PB-3NF54-PiggyBac MutantERR224840
3-PB-59NF54-PiggyBac MutantERR224839
5-Rajeev-1NF54-PiggyBac MutantERR224838
5-UknMP1-2012NF54-PiggyBac MutantERR224837
5-PB-47_PB-3NF54-PiggyBac MutantERR224836
5-PB-119NF54-PiggyBac MutantERR224835
3-Rajeev-1NF54-PiggyBac MutantERR224834
3-UknMP1-2012NF54-PiggyBac MutantERR224833
3-PB-47_PB-3NF54-PiggyBac MutantERR224832
3-PB-119NF54-PiggyBac MutantERR224831
5-Chris-E8NF54-PiggyBac MutantERR224830
5-KnMP_6NF54-PiggyBac MutantERR224829
5-PB-3NF54-PiggyBac MutantERR224828
5-PB-116NF54-PiggyBac MutantERR224827
3-Chris-E8NF54-PiggyBac MutantERR224826
3-KnMP_6NF54-PiggyBac MutantERR224825
3-PB-3NF54-PiggyBac MutantERR224824
3-PB-116NF54-PiggyBac MutantERR224823
5-Chris-E3NF54-PiggyBac MutantERR224822
5-KnMP_3NF54-PiggyBac MutantERR224821
5-PB-49NF54-PiggyBac MutantERR224820
5-PB-39NF54-PiggyBac MutantERR224819
3-KnMP_3NF54-PiggyBac MutantERR224817
3-PB-49NF54-PiggyBac MutantERR224816
3-PB-39NF54-PiggyBac MutantERR224815
NF54_NoPCRNF54ERR223481
NF54_NoPCRNF54ERR268105
HB2_1UnknownERR338888
HB2_1UnknownERR403697
HB3_1UnknownERR337902
HB3_1UnknownERR403696
40PBPld_15-2NF54-PiggyBac MutantERR376402
40PBPld_15-2NF54-PiggyBac MutantERR381620
40PBPld_15-2NF54-PiggyBac MutantERR381716
40PBPld_15-1NF54-PiggyBac MutantERR376390
40PBPld_15-1NF54-PiggyBac MutantERR381608
40PBPld_15-1NF54-PiggyBac MutantERR381704
PB3_PB69NF54-PiggyBac MutantERR376381
PB3_PB69NF54-PiggyBac MutantERR381599
PB3_PB69NF54-PiggyBac MutantERR381695
PB87_PB115NF54-PiggyBac MutantERR376376
PB87_PB115NF54-PiggyBac MutantERR381594
PB87_PB115NF54-PiggyBac MutantERR381690
40PBPld_15-3NF54-PiggyBac MutantERR376345
40PBPld_15-3NF54-PiggyBac MutantERR381563
40PBPld_15-3NF54-PiggyBac MutantERR381659
PB79_PB80NF54-PiggyBac MutantERR376328
PB79_PB80NF54-PiggyBac MutantERR381642
PB109_PB110NF54-PiggyBac MutantERR376318
PB109_PB110NF54-PiggyBac MutantERR381536
PB109_PB110NF54-PiggyBac MutantERR381632
PB20_PB21NF54-PiggyBac MutantERR376313
PB20_PB21NF54-PiggyBac MutantERR381531
PB20_PB21NF54-PiggyBac MutantERR381627
PB107_PB108NF54-PiggyBac MutantERR381619
PB107_PB108NF54-PiggyBac MutantERR381715
PB91_PB92NF54-PiggyBac MutantERR381618
PB91_PB92NF54-PiggyBac MutantERR381714
PB75_PB76NF54-PiggyBac MutantERR381617
PB75_PB76NF54-PiggyBac MutantERR381713
PB57_PB58NF54-PiggyBac MutantERR381616
PB57_PB58NF54-PiggyBac MutantERR381712
PB37_PB14NF54-PiggyBac MutantERR381615
PB37_PB14NF54-PiggyBac MutantERR381711
PB18_PB114NF54-PiggyBac MutantERR381614
PB18_PB114NF54-PiggyBac MutantERR381710
40PBPld_6-1NF54-PiggyBac MutantERR381613
40PBPld_6-1NF54-PiggyBac MutantERR381709
PB3_PB10NF54-PiggyBac MutantERR381612
PB3_PB10NF54-PiggyBac MutantERR381708
PB3_PB10NF54-PiggyBac MutantERR471174
PB3_PB10NF54-PiggyBac MutantERR471202
PB3_PB10NF54-PiggyBac MutantERR471230
PB3_PB10NF54-PiggyBac MutantERR471258
PB3_PB116NF54-PiggyBac MutantERR381611
PB3_PB116NF54-PiggyBac MutantERR381707
2012UKnMP16NF54-PiggyBac MutantERR381610
2012UKnMP16NF54-PiggyBac MutantERR381706
2012UKnMP16NF54-PiggyBac MutantERR471173
2012UKnMP16NF54-PiggyBac MutantERR471201
2012UKnMP16NF54-PiggyBac MutantERR471229
2012UKnMP16NF54-PiggyBac MutantERR471257
2013UknMP8NF54-PiggyBac MutantERR381609
2013UknMP8NF54-PiggyBac MutantERR381705
2013UknMP8NF54-PiggyBac MutantERR471200
2013UknMP8NF54-PiggyBac MutantERR471172
2013UknMP8NF54-PiggyBac MutantERR471228
2013UknMP8NF54-PiggyBac MutantERR471256
PB105_PB16NF54-PiggyBac MutantERR381607
PB105_PB16NF54-PiggyBac MutantERR381703
PB89_PB90NF54-PiggyBac MutantERR381606
PB89_PB90NF54-PiggyBac MutantERR381702
PB73_PB74NF54-PiggyBac MutantERR381605
PB73_PB74NF54-PiggyBac MutantERR381701
PB55_PB56NF54-PiggyBac MutantERR381604
PB55_PB56NF54-PiggyBac MutantERR381700
PB35_PB36NF54-PiggyBac MutantERR381603
PB35_PB36NF54-PiggyBac MutantERR381699
PB16_PB17NF54-PiggyBac MutantERR381602
PB16_PB17NF54-PiggyBac MutantERR381698
40PBPld_3-3NF54-PiggyBac MutantERR381601
40PBPld_3-3NF54-PiggyBac MutantERR381697
PB3_PB106NF54-PiggyBac MutantERR381600
PB3_PB106NF54-PiggyBac MutantERR381696
PB3_PB106NF54-PiggyBac MutantERR471171
PB3_PB106NF54-PiggyBac MutantERR471199
PB3_PB106NF54-PiggyBac MutantERR471227
PB3_PB106NF54-PiggyBac MutantERR471255
2012UKnMP15NF54-PiggyBac MutantERR381598
2012UKnMP15NF54-PiggyBac MutantERR381694
2012UKnMP15NF54-PiggyBac MutantERR471198
2012UKnMP15NF54-PiggyBac MutantERR471170
2012UKnMP15NF54-PiggyBac MutantERR471226
2012UKnMP15NF54-PiggyBac MutantERR471254
2012UKnMP7NF54-PiggyBac MutantERR381597
2012UKnMP7NF54-PiggyBac MutantERR381693
2012UKnMP7NF54-PiggyBac MutantERR471197
2012UKnMP7NF54-PiggyBac MutantERR471169
2012UKnMP7NF54-PiggyBac MutantERR471225
2012UKnMP7NF54-PiggyBac MutantERR471253
PB103_PB104NF54-PiggyBac MutantERR381595
PB103_PB104NF54-PiggyBac MutantERR381691
PB71_PB72NF54-PiggyBac MutantERR381593
PB71_PB72NF54-PiggyBac MutantERR381689
PB53_PB54NF54-PiggyBac MutantERR381592
PB53_PB54NF54-PiggyBac MutantERR381688
PB31_PB34NF54-PiggyBac MutantERR381591
PB31_PB34NF54-PiggyBac MutantERR381687
PB12_PB13NF54-PiggyBac MutantERR381590
PB12_PB13NF54-PiggyBac MutantERR381686
40PBPld_3-2NF54-PiggyBac MutantERR381589
40PBPld_3-2NF54-PiggyBac MutantERR381685
PB3_PB1NF54-PiggyBac MutantERR381588
PB3_PB1NF54-PiggyBac MutantERR381684
PB3_PB1NF54-PiggyBac MutantERR471168
PB3_PB1NF54-PiggyBac MutantERR471196
PB3_PB1NF54-PiggyBac MutantERR471224
PB3_PB1NF54-PiggyBac MutantERR471252
PB3_PB59NF54-PiggyBac MutantERR381587
PB3_PB59NF54-PiggyBac MutantERR381683
2012UKnMP14NF54-PiggyBac MutantERR381586
2012UKnMP14NF54-PiggyBac MutantERR381682
2012UKnMP14NF54-PiggyBac MutantERR471167
2012UKnMP14NF54-PiggyBac MutantERR471195
2012UKnMP14NF54-PiggyBac MutantERR471251
2012UKnMP14NF54-PiggyBac MutantERR471223
2012UKnMP6NF54-PiggyBac MutantERR381585
2012UKnMP6NF54-PiggyBac MutantERR381681
2012UKnMP6NF54-PiggyBac MutantERR471194
2012UKnMP6NF54-PiggyBac MutantERR471166
2012UKnMP6NF54-PiggyBac MutantERR471250
2012UKnMP6NF54-PiggyBac MutantERR471222
NegCtrl-1NF54-PiggyBac MutantERR381584
NegCtrl-1NF54-PiggyBac MutantERR381680
PB101_PB102NF54-PiggyBac MutantERR381583
PB101_PB102NF54-PiggyBac MutantERR381679
PB85_PB8NF54-PiggyBac MutantERR381582
PB85_PB8NF54-PiggyBac MutantERR381678
PB68_PB70NF54-PiggyBac MutantERR381581
PB68_PB70NF54-PiggyBac MutantERR381677
PB51_PB52NF54-PiggyBac MutantERR381580
PB51_PB52NF54-PiggyBac MutantERR381676
PB28_PB30NF54-PiggyBac MutantERR381579
PB28_PB30NF54-PiggyBac MutantERR381675
PB9_PB19NF54-PiggyBac MutantERR381578
PB9_PB19NF54-PiggyBac MutantERR381674
40PBPld_3-1NF54-PiggyBac MutantERR381577
40PBPld_3-1NF54-PiggyBac MutantERR381673
PB3_PB7NF54-PiggyBac MutantERR381576
PB3_PB7NF54-PiggyBac MutantERR381672
PB3_PB7NF54-PiggyBac MutantERR471193
PB3_PB7NF54-PiggyBac MutantERR471165
PB3_PB7NF54-PiggyBac MutantERR471249
PB3_PB7NF54-PiggyBac MutantERR471221
PB3_PB33NF54-PiggyBac MutantERR381575
PB3_PB33NF54-PiggyBac MutantERR381671
2012UKnMP13NF54-PiggyBac MutantERR381574
2012UKnMP13NF54-PiggyBac MutantERR381670
2012UKnMP13NF54-PiggyBac MutantERR471192
2012UKnMP13NF54-PiggyBac MutantERR471164
2012UKnMP13NF54-PiggyBac MutantERR471248
2012UKnMP13NF54-PiggyBac MutantERR471220
2012UKnMP5NF54-PiggyBac MutantERR381573
2012UKnMP5NF54-PiggyBac MutantERR381669
2012UKnMP5NF54-PiggyBac MutantERR471191
2012UKnMP5NF54-PiggyBac MutantERR471163
2012UKnMP5NF54-PiggyBac MutantERR471219
2012UKnMP5NF54-PiggyBac MutantERR471247
PB27_PB3NF54-PiggyBac MutantERR381572
PB27_PB3NF54-PiggyBac MutantERR381668
PB99_PB100NF54-PiggyBac MutantERR381571
PB99_PB100NF54-PiggyBac MutantERR381667
PB83_PB84NF54-PiggyBac MutantERR381570
PB83_PB84NF54-PiggyBac MutantERR381666
PB66_PB67NF54-PiggyBac MutantERR381569
PB66_PB67NF54-PiggyBac MutantERR381665
PB118_PB50NF54-PiggyBac MutantERR381568
PB118_PB50NF54-PiggyBac MutantERR381664
PB26_PB126NF54-PiggyBac MutantERR381567
PB26_PB126NF54-PiggyBac MutantERR381663
PB4_PB5NF54-PiggyBac MutantERR381566
PB4_PB5NF54-PiggyBac MutantERR381662
PB3_PB42NF54-PiggyBac MutantERR381565
PB3_PB42NF54-PiggyBac MutantERR381661
PB3_PB42NF54-PiggyBac MutantERR471162
PB3_PB42NF54-PiggyBac MutantERR471190
PB3_PB42NF54-PiggyBac MutantERR471218
PB3_PB42NF54-PiggyBac MutantERR471246
PB3_PB6NF54-PiggyBac MutantERR381564
PB3_PB6NF54-PiggyBac MutantERR381660
PB3_PB6NF54-PiggyBac MutantERR471161
PB3_PB6NF54-PiggyBac MutantERR471189
PB3_PB6NF54-PiggyBac MutantERR471217
PB3_PB6NF54-PiggyBac MutantERR471245
2012UKnMP12NF54-PiggyBac MutantERR381562
2012UKnMP12NF54-PiggyBac MutantERR381658
2012UKnMP12NF54-PiggyBac MutantERR471160
2012UKnMP12NF54-PiggyBac MutantERR471188
2012UKnMP12NF54-PiggyBac MutantERR471216
2012UKnMP12NF54-PiggyBac MutantERR471244
2012UKnMP4NF54-PiggyBac MutantERR381561
2012UKnMP4NF54-PiggyBac MutantERR381657
2012UKnMP4NF54-PiggyBac MutantERR471159
2012UKnMP4NF54-PiggyBac MutantERR471187
2012UKnMP4NF54-PiggyBac MutantERR471215
2012UKnMP4NF54-PiggyBac MutantERR471243
PB123_PB38NF54-PiggyBac MutantERR381560
PB123_PB38NF54-PiggyBac MutantERR381656
PB97_PB98NF54-PiggyBac MutantERR381559
PB97_PB98NF54-PiggyBac MutantERR381655
PB81_PB82NF54-PiggyBac MutantERR381558
PB81_PB82NF54-PiggyBac MutantERR381654
PB64_PB65NF54-PiggyBac MutantERR381557
PB64_PB65NF54-PiggyBac MutantERR381653
PB45_PB15NF54-PiggyBac MutantERR381556
PB45_PB15NF54-PiggyBac MutantERR381652
PB24_PB25NF54-PiggyBac MutantERR381555
PB24_PB25NF54-PiggyBac MutantERR381651
40PBPld_12NF54-PiggyBac MutantERR381554
40PBPld_12NF54-PiggyBac MutantERR381650
PB3_PB11NF54-PiggyBac MutantERR381553
PB3_PB11NF54-PiggyBac MutantERR381649
PB3_PB11NF54-PiggyBac MutantERR471214
PB3_PB11NF54-PiggyBac MutantERR471242
PB3_PB113NF54-PiggyBac MutantERR381552
PB3_PB113NF54-PiggyBac MutantERR381648
2012UKnMP19NF54-PiggyBac MutantERR381551
2012UKnMP19NF54-PiggyBac MutantERR381647
2012UKnMP19NF54-PiggyBac MutantERR471185
2012UKnMP19NF54-PiggyBac MutantERR471157
2012UKnMP19NF54-PiggyBac MutantERR471213
2012UKnMP19NF54-PiggyBac MutantERR471241
2014UknMP11NF54-PiggyBac MutantERR381550
2014UknMP11NF54-PiggyBac MutantERR381646
2014UknMP11NF54-PiggyBac MutantERR471184
2014UknMP11NF54-PiggyBac MutantERR471156
2014UknMP11NF54-PiggyBac MutantERR471240
2014UknMP11NF54-PiggyBac MutantERR471212
2012UKnMP3NF54-PiggyBac MutantERR381549
2012UKnMP3NF54-PiggyBac MutantERR381645
2012UKnMP3NF54-PiggyBac MutantERR471155
2012UKnMP3NF54-PiggyBac MutantERR471183
2012UKnMP3NF54-PiggyBac MutantERR471211
2012UKnMP3NF54-PiggyBac MutantERR471239
PB121_PB122NF54-PiggyBac MutantERR381548
PB121_PB122NF54-PiggyBac MutantERR381644
PB95_PB96NF54-PiggyBac MutantERR381547
PB95_PB96NF54-PiggyBac MutantERR381643
PB62_PB63NF54-PiggyBac MutantERR381545
PB62_PB63NF54-PiggyBac MutantERR381641
PB125_PB44NF54-PiggyBac MutantERR381544
PB125_PB44NF54-PiggyBac MutantERR381640
PB22_PB23NF54-PiggyBac MutantERR381543
PB22_PB23NF54-PiggyBac MutantERR381639
40PBPld_6-3NF54-PiggyBac MutantERR381542
40PBPld_6-3NF54-PiggyBac MutantERR381638
PB3_PB117NF54-PiggyBac MutantERR381541
PB3_PB117NF54-PiggyBac MutantERR381637
PB3_PB117NF54-PiggyBac MutantERR471154
PB3_PB117NF54-PiggyBac MutantERR471182
PB3_PB117NF54-PiggyBac MutantERR471210
PB3_PB117NF54-PiggyBac MutantERR471238
PB3_PB112NF54-PiggyBac MutantERR381540
PB3_PB112NF54-PiggyBac MutantERR381636
2012UKnMP18NF54-PiggyBac MutantERR381539
2012UKnMP18NF54-PiggyBac MutantERR381635
2012UKnMP18NF54-PiggyBac MutantERR471153
2012UKnMP18NF54-PiggyBac MutantERR471181
2012UKnMP18NF54-PiggyBac MutantERR471209
2012UKnMP18NF54-PiggyBac MutantERR471237
2013UknMP10NF54-PiggyBac MutantERR381538
2013UknMP10NF54-PiggyBac MutantERR381634
2013UknMP10NF54-PiggyBac MutantERR471180
2013UknMP10NF54-PiggyBac MutantERR471152
2013UknMP10NF54-PiggyBac MutantERR471208
2013UknMP10NF54-PiggyBac MutantERR471236
2012UKnMP2NF54-PiggyBac MutantERR381537
2012UKnMP2NF54-PiggyBac MutantERR381633
2012UKnMP2NF54-PiggyBac MutantERR471151
2012UKnMP2NF54-PiggyBac MutantERR471179
2012UKnMP2NF54-PiggyBac MutantERR471235
2012UKnMP2NF54-PiggyBac MutantERR471207
PB124_PB94NF54-PiggyBac MutantERR381535
PB124_PB94NF54-PiggyBac MutantERR381631
PB77_PB78NF54-PiggyBac MutantERR381534
PB77_PB78NF54-PiggyBac MutantERR381630
PB120_PB61NF54-PiggyBac MutantERR381533
PB120_PB61NF54-PiggyBac MutantERR381629
PB40_PB41NF54-PiggyBac MutantERR381532
PB40_PB41NF54-PiggyBac MutantERR381628
40PBPld_6-2NF54-PiggyBac MutantERR381530
40PBPld_6-2NF54-PiggyBac MutantERR381626
PB3_PB60NF54-PiggyBac MutantERR381529
PB3_PB60NF54-PiggyBac MutantERR381625
PB3_PB60NF54-PiggyBac MutantERR471178
PB3_PB60NF54-PiggyBac MutantERR471150
PB3_PB60NF54-PiggyBac MutantERR471206
PB3_PB60NF54-PiggyBac MutantERR471234
PB3_PB111NF54-PiggyBac MutantERR381528
PB3_PB111NF54-PiggyBac MutantERR381624
2012UKnMP17NF54-PiggyBac MutantERR381527
2012UKnMP17NF54-PiggyBac MutantERR381623
2012UKnMP17NF54-PiggyBac MutantERR471149
2012UKnMP17NF54-PiggyBac MutantERR471177
2012UKnMP17NF54-PiggyBac MutantERR471205
2012UKnMP17NF54-PiggyBac MutantERR471233
2013UknMP9NF54-PiggyBac MutantERR381526
2013UknMP9NF54-PiggyBac MutantERR381622
2013UknMP9NF54-PiggyBac MutantERR471148
2013UknMP9NF54-PiggyBac MutantERR471176
2013UknMP9NF54-PiggyBac MutantERR471204
2013UknMP9NF54-PiggyBac MutantERR471232
2012UKnMP1NF54-PiggyBac MutantERR381525
2012UKnMP1NF54-PiggyBac MutantERR381621
2012UKnMP1NF54-PiggyBac MutantERR471175
2012UKnMP1NF54-PiggyBac MutantERR471147
2012UKnMP1NF54-PiggyBac MutantERR471203
2012UKnMP1NF54-PiggyBac MutantERR471231
PP-24NF54-PiggyBac MutantERR438854
PP-23NF54-PiggyBac MutantERR438853
PP-22NF54-PiggyBac MutantERR438852
PP-21NF54-PiggyBac MutantERR438851
PP-20NF54-PiggyBac MutantERR438850
PP-19NF54-PiggyBac MutantERR438849
PP-18NF54-PiggyBac MutantERR438848
PP-17NF54-PiggyBac MutantERR438847
PP-16NF54-PiggyBac MutantERR438846
PP-15NF54-PiggyBac MutantERR438845
PP-14NF54-PiggyBac MutantERR438844
PP-13NF54-PiggyBac MutantERR438843
PP-12NF54-PiggyBac MutantERR438842
PP-11NF54-PiggyBac MutantERR438841
PP-10NF54-PiggyBac MutantERR438840
PP-9NF54-PiggyBac MutantERR438839
PP-8NF54-PiggyBac MutantERR438838
PP-7NF54-PiggyBac MutantERR438837
PP-6NF54-PiggyBac MutantERR438836
PP-5NF54-PiggyBac MutantERR438835
PP-4NF54-PiggyBac MutantERR438834
PP-3NF54-PiggyBac MutantERR438833
PP-2NF54-PiggyBac MutantERR438832
PP-1NF54-PiggyBac MutantERR438831

Plasmodium falciparum enrichment tests

Sample

Strain

Run Accession

ech_1UnknownERR018814

Genome-Wide Subnuclear Architecture in Antigenically Selected Lines of P.falciparum

Sample

Strain

Run Accession

3C_HindIIIITERR333727
3C_MboIITERR333728
HiC_HindIIIITERR333729
HiC_MboIITERR333730
3C_H_OFF_DCJUnknownERR333740
HiC_M_ON_DCJUnknownERR333731
3C_H_B15C2UnknownERR333741
HiC_M_Dd2UnknownERR333732
3C_H_Rev1UnknownERR333742
HiC_M_PQP1UnknownERR333733
3C_H_3D7UnknownERR333743
3C_E_ER3D7UnknownERR333744
HiC_H_ER3D7UnknownERR333734
HiCM_E_LT3D7UnknownERR333745
3C_H_LT3D7UnknownERR333746
HiC_M_OFF_DCJUnknownERR333735
3C__H_ON_DCJUnknownERR333747
HiC_H_B15C2UnknownERR333736
3C_M_Dd2UnknownERR333748
HiC_H_Rev1UnknownERR333737
3C_M_PQP1UnknownERR333749
HiC_H_3D7UnknownERR333738
HiCM_E_ER3D7UnknownERR333750
3C_H_ER3D7UnknownERR333751
HiC_M_LT3D7UnknownERR333739
3C_M_OFF_DCJUnknownERR333761
HiC_H_ON_DCJUnknownERR333752
3C_M_B15C2UnknownERR333762
HiC_H_Dd2UnknownERR333753
3C_M_Rev1UnknownERR333763
HiC_H_PQP1UnknownERR333754
3C_M_3D7UnknownERR333764
3C_M_ER3D7UnknownERR333765
HiCM_H_ER3D7UnknownERR333766
3C_M_LT3D7UnknownERR333767
HiC_H_OFF_DCJUnknownERR333755
3C_M_ON_DCJUnknownERR333768
HIC_M_B15C2UnknownERR333756
3C_H_Dd2UnknownERR333769
HiC_M_Rev1UnknownERR333757
3C_H_PQP1UnknownERR333770
HiC_M_3D7UnknownERR333758
HiC_M_ER3D7UnknownERR333759
3C_E_LT3D7UnknownERR333771
HiC_H_LT3D7UnknownERR333760
HiCM_H_LT3D7UnknownERR333772
A4posH3_3CITERR333773
A4negH3_3CITERR333774
3G8H3_3C_1ITERR333775
A4posMbo3C_1ITERR333776
A4negMbo3C_1ITERR333777
3G8Mbo3C_1ITERR333778
A4posH3ligITERR333779
3G8H3LigITERR333780
A4unselH3LigITERR333781
A4posMboLigITERR333782
3G8MboLigITERR333783
A4unselMboLigITERR333784
A4posH3HiCITERR333785
A4negH3HiCITERR333786
3G8H3HiCITERR333787
A4posMboHiCITERR333788
A4negMboHiCITERR333789
3G8MboHiCITERR333790
  • Genome sequence of the human malaria parasite Plasmodium falciparum.

    Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM and Barrell B

    Nature 2002;419;6906;498-511

  • Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.

    Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C and Barrell BG

    Nature 2002;419;6906;527-31

  • The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum.

    Bowman S, Lawson D, Basham D, Brown D, Chillingworth T, Churcher CM, Craig A, Davies RM, Devlin K, Feltwell T, Gentles S, Gwilliam R, Hamlin N, Harris D, Holroyd S, Hornsby T, Horrocks P, Jagels K, Jassal B, Kyes S, McLean J, Moule S, Mungall K, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutter S, Skelton J, Squares R, Squares S, Sulston JE, Whitehead S, Woodward JR, Newbold C and Barrell BG

    Nature 1999;400;6744;532-8

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/2zec5047