Plasmodium chabaudi

P. chabaudi is one of the four malaria species that infect murine rodents from Central Africa that are infectious to laboratory rodents and easily maintained and transmitted by Anopheles stephensi in the laboratory. It serves as a good model for the human parasites with which it shares high homology in most essential aspects of structure, biochemistry and life cycle. Genome organisation is conserved between rodent and human parasites and the two share detailed synteny.

Data Downloads

[Genome Research Limited]

The nuclear genome of the rodent malaria parasite P. chabaudi AS is 18.8 Mb in size, with a karyotype of 14 chromosomes. The G+C content is approximately 23%.

Published Genome Data

The Wellcome Trust Sanger Institute Pathogen Genomics team initially undertook a partial shotgun sequencing of a number of different species of Plasmodium, including P. chabaudi. This contibues to serve as useful comparative genomics resource to complement the complete Plasmodium falciparum genome. This work was done in collaboration with Chris Newbold (Oxford) and Mike Turner (Glasgow).

Whole genome shotgun sequencing has continued to 8x coverage. Finishing (gap closure) was started in 2008 and will be followed by a publication of the completed and annotated genome sequence.

Simultaneous host-parasite RNA sequencing of rodent malaria infection time course

Sample

Strain

Run Accession

P-19_RNAPlasmodium chabaudi chabaudi ASERR274011
P-19_RNAPlasmodium chabaudi chabaudi ASERR273996
P-19_RNAPlasmodium chabaudi chabaudi ASERR273981
P-16_RNAPlasmodium chabaudi chabaudi ASERR274010
P-16_RNAPlasmodium chabaudi chabaudi ASERR273995
P-16_RNAPlasmodium chabaudi chabaudi ASERR273980
P-13_RNAPlasmodium chabaudi chabaudi ASERR274009
P-13_RNAPlasmodium chabaudi chabaudi ASERR273994
P-13_RNAPlasmodium chabaudi chabaudi ASERR273979
P-10_RNAPlasmodium chabaudi chabaudi ASERR274008
P-10_RNAPlasmodium chabaudi chabaudi ASERR273993
P-10_RNAPlasmodium chabaudi chabaudi ASERR273978
P-1_RNAPlasmodium chabaudi chabaudi ASERR274005
P-1_RNAPlasmodium chabaudi chabaudi ASERR273990
P-1_RNAPlasmodium chabaudi chabaudi ASERR273975
P-7_RNAPlasmodium chabaudi chabaudi ASERR274007
P-7_RNAPlasmodium chabaudi chabaudi ASERR273992
P-7_RNAPlasmodium chabaudi chabaudi ASERR273977
P-4_RNAPlasmodium chabaudi chabaudi ASERR274006
P-4_RNAPlasmodium chabaudi chabaudi ASERR273991
P-4_RNAPlasmodium chabaudi chabaudi ASERR273976
P-21_RNAPlasmodium chabaudi chabaudi ASERR274101
P-21_RNAPlasmodium chabaudi chabaudi ASERR274086
P-21_RNAPlasmodium chabaudi chabaudi ASERR274071
P-18_RNAPlasmodium chabaudi chabaudi ASERR274100
P-18_RNAPlasmodium chabaudi chabaudi ASERR274085
P-18_RNAPlasmodium chabaudi chabaudi ASERR274070
P-15_RNAPlasmodium chabaudi chabaudi ASERR274099
P-15_RNAPlasmodium chabaudi chabaudi ASERR274084
P-15_RNAPlasmodium chabaudi chabaudi ASERR274069
P-12_RNAPlasmodium chabaudi chabaudi ASERR274098
P-12_RNAPlasmodium chabaudi chabaudi ASERR274083
P-12_RNAPlasmodium chabaudi chabaudi ASERR274068
P-9_RNAPlasmodium chabaudi chabaudi ASERR274097
P-9_RNAPlasmodium chabaudi chabaudi ASERR274082
P-9_RNAPlasmodium chabaudi chabaudi ASERR274067
P-6_RNAPlasmodium chabaudi chabaudi ASERR274096
P-6_RNAPlasmodium chabaudi chabaudi ASERR274081
P-6_RNAPlasmodium chabaudi chabaudi ASERR274066
P-3_RNAPlasmodium chabaudi chabaudi ASERR274095
P-3_RNAPlasmodium chabaudi chabaudi ASERR274080
P-3_RNAPlasmodium chabaudi chabaudi ASERR274065
P-20_RNAPlasmodium chabaudi chabaudi ASERR274056
P-20_RNAPlasmodium chabaudi chabaudi ASERR274041
P-20_RNAPlasmodium chabaudi chabaudi ASERR274026
P-17_RNAPlasmodium chabaudi chabaudi ASERR274055
P-17_RNAPlasmodium chabaudi chabaudi ASERR274040
P-17_RNAPlasmodium chabaudi chabaudi ASERR274025
P-14_RNAPlasmodium chabaudi chabaudi ASERR274054
P-14_RNAPlasmodium chabaudi chabaudi ASERR274039
P-14_RNAPlasmodium chabaudi chabaudi ASERR274024
P-11_RNAPlasmodium chabaudi chabaudi ASERR274053
P-11_RNAPlasmodium chabaudi chabaudi ASERR274038
P-11_RNAPlasmodium chabaudi chabaudi ASERR274023
P-8_RNAPlasmodium chabaudi chabaudi ASERR274052
P-8_RNAPlasmodium chabaudi chabaudi ASERR274037
P-8_RNAPlasmodium chabaudi chabaudi ASERR274022
P-5_RNAPlasmodium chabaudi chabaudi ASERR274051
P-5_RNAPlasmodium chabaudi chabaudi ASERR274036
P-5_RNAPlasmodium chabaudi chabaudi ASERR274021
P-2_RNAPlasmodium chabaudi chabaudi ASERR274050
P-2_RNAPlasmodium chabaudi chabaudi ASERR274035
P-2_RNAPlasmodium chabaudi chabaudi ASERR274020
  • A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.

    Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP and Sinden RE

    Science (New York, N.Y.) 2005;307;5706;82-6

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/rt8oo5gk