P. berghei has an estimated genome size of 18-20 Mb, with 14 chromosomes in the size range of 0.6 Mb to 3.8 Mb. DNA for this sequencing project was obtained from asynchronous bloodstages of clone 15cy1 of the ANKA strain of P. berghei.
Published Genome Data
An initial analysis of the partial genome at 3x coverage has been published.
Studies
WGS of P. berghei ANKA clone
Sample | Strain | Run Accession |
|---|---|---|
| berg_no_pcr | ANKA | ERR012896 |
| berg_no_pcr_tight | ANKA | ERR012897 |
| berg500_NoPCR | ANKA | ERR012898 |
| berg500_NoPCR | ANKA | ERR018879 |
| Pb_3kb | ANKA | ERR173578 |
Plasmodium berghei pJAZZ clone sequencing
Sample | Strain | Run Accession |
|---|---|---|
| Pb_pJazz_clones | ANKA | ERR040111 |
Plasmodium berghei diversity and history - whole genome sequencing of phenotypically diverse laboratory lines
Sample | Strain | Run Accession |
|---|---|---|
| Pb_NK65ny | NK65 ny | ERR126102 |
| Pb_NK65e | NK65e | ERR126103 |
| Pb_SP11_Antwerpcl1 | SP11 Antwerpcl1 | ERR126104 |
| Pb_SP11_RLL | SP11 RLL | ERR126105 |
Genetic diversity of P. berghei strains with different defined phenotypes
Sample | Strain | Run Accession |
|---|---|---|
| 233_gDNA | 233 | ERR019298 |
| K173v1_gDNA_NoPCR | K173 | ERR019300 |
| K173v1_gDNA_NoPCR | K173 | ERR019299 |
| K173v1_gDNA_NoPCR | K173 | ERR019301 |
| 234_gDNA_NoPCR | 234 | ERR019302 |
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A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.
Science (New York, N.Y.) 2005;307;5706;82-6
PUBMED: 15637271; DOI: 10.1126/science.1103717

