Streptococcus suis

Streptococcus suis is a Gram-positive bacterium that infects pigs and can occasionally cause serious infections in humans. Zoonotic infections occur sporadically in human Europe and North America, but a recent major outbreak has been described in China with high levels of mortality.

Data Downloads

[Genome Research Limited]

We have sequenced the whole genome sequences of three Streptococcus suis strains from the same lineage: one from European pigs, and two from human cases from China and Vietnam.

The strains are:

  • P1/7 was isolated from an ante-mortem blood culture from a pig dying with meningitis, and is sequence type (ST)1 by MLST
  • BM407 was isolated from CSF from a human case of meningitis in Ho Chi Minh City, Vietnam in 2004, and is is ST1
  • SC84 was isolated from a case of streptococcal toxic shock-like syndrome in Sichuan Province, China in 2005, and is is ST7, a single locus varient of ST1

We have also undertaken some deep sequencing within the ST1 lineages, examining human and pig isolates from in and around Ho Chi Minh City, Vietnam

Collaborators

Stephen Baker, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

Constance Schultsz, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

Published Genome Data

The sequences and annotations of the Streptococcus suis P1/7, SC84 and BM407 genomes have been deposited in the EMBL database under accession numbers AM946016, FM252031, FM252032 and FM252033 respectively.

Shotgun and assembly data from these projects are available from our FTP site.

Studies

Discovery of sequence diversity in Streptococcus suis (Vietnam)

Sample

Strain

Run Accession

BM308BM308ERR047092
BM321BM321ERR047094
BM315BM315ERR047093
BM329BM329ERR047095
BM334BM334ERR047096
BM346BM346ERR047098
BM357BM357ERR047099
BM358BM358ERR047100
BM362BM362ERR047101
BM366BM366ERR047102
BM373BM373ERR047103
FX147_3UnknownERR193313
FX96UnknownERR193312
FX90_2UnknownERR193311
FX77_1UnknownERR193310
FX74UnknownERR193309
FX73_1UnknownERR193308
FX59_4UnknownERR193307
FX51_2UnknownERR193306
FX50_2UnknownERR193305
FX40_1UnknownERR193304
FX28_2UnknownERR193303
FX22UnknownERR193302
FX18UnknownERR193301
FX14UnknownERR193300
FX109UnknownERR193299
EN660UnknownERR193298
EN652UnknownERR193297
EN636UnknownERR193296
EN633UnknownERR193295
EN515UnknownERR193294
EN508UnknownERR193293
EN507UnknownERR193292
EN506UnknownERR193291
EN399UnknownERR193290
EN370UnknownERR193289
EN330UnknownERR193288
EN326UnknownERR193287
EN314UnknownERR193286
EN281UnknownERR193285
EN271UnknownERR193284
EN264UnknownERR193283
EN253UnknownERR193282
EN251UnknownERR193281
EN191UnknownERR193280
EN177UnknownERR193279
EN171UnknownERR193278
EN170UnknownERR193277
EN124UnknownERR193276
EN0114UnknownERR193275
EN068UnknownERR193274
EN050UnknownERR193273
EN044UnknownERR193272
EN031UnknownERR193271
EN024UnknownERR193270
EN023UnknownERR193269
EN020UnknownERR193268
EN015UnknownERR193267
EN010UnknownERR193266
EN003UnknownERR193265
BM478UnknownERR193264
BM471UnknownERR193263
BM466UnknownERR193262
BM465UnknownERR193261
BM461UnknownERR193260
BM460UnknownERR193259
BM452CUnknownERR193258
BM444aUnknownERR193257
BM441aUnknownERR193256
BM436aUnknownERR193255
BM424aUnknownERR193254
BM418aUnknownERR193253
BM411aUnknownERR193252
BM373aUnknownERR193251
BM366aUnknownERR193250
BM362aUnknownERR193249
BM358aUnknownERR193248
BM357BUnknownERR193247
BM346BUnknownERR193246
BM345BUnknownERR193245
BM334BUnknownERR193244
BM329BUnknownERR193243
BM321CUnknownERR193242
BM315CUnknownERR193241
BM308aUnknownERR193240
BM303aUnknownERR193239
BM278aUnknownERR193238
BM272CUnknownERR193237
BM264aUnknownERR193236
BM257aUnknownERR193235
BM253aUnknownERR193234
BM251CUnknownERR193233
BM241aUnknownERR193232
BM237aUnknownERR193231
BM231aUnknownERR193230
BM228CUnknownERR193229
BM224CUnknownERR193228
BM216aUnknownERR193227
BM213aUnknownERR193226
BM211aUnknownERR193225
BM209aUnknownERR193224
BM203aUnknownERR193223
BM198aUnknownERR193222
BM197aUnknownERR193221
BM191aUnknownERR193220
BM190aUnknownERR193219
BM178aUnknownERR193218
VS3513UnknownERR211771
VS3466UnknownERR211770
VS3309UnknownERR211769
VS329UnknownERR211768
VS3121UnknownERR211767
VS2979UnknownERR211766
VS2923UnknownERR211765
VS2903UnknownERR211764
SS102UnknownERR211763
SS101UnknownERR211762
SS99UnknownERR211761
SS97UnknownERR211760
SS87UnknownERR211759
SS85UnknownERR211758
SS84UnknownERR211757
SS83UnknownERR211756
SS82UnknownERR211755
SS81UnknownERR211754
SS79UnknownERR211753
SS78UnknownERR211752
SS76UnknownERR211751
SS74UnknownERR211750
SS73UnknownERR211749
SS69UnknownERR211748
SS66UnknownERR211747
SS65UnknownERR211746
SS61UnknownERR211745
SS47UnknownERR211744
SS46UnknownERR211743
SS44UnknownERR211742
SS40UnknownERR211741
SS38UnknownERR211740
SS37UnknownERR211739
SS36UnknownERR211738
SS35UnknownERR211737
SS33UnknownERR211736
SS32UnknownERR211735
SS31UnknownERR211734
SS30UnknownERR211733
SS29UnknownERR211732
SS28UnknownERR211731
SS27UnknownERR211730
SS26UnknownERR211729
SS25UnknownERR211728
SS24UnknownERR211727
SS23UnknownERR211726
SS22UnknownERR211725
SS21UnknownERR211724
SS20UnknownERR211723
SS19UnknownERR211722
SS17UnknownERR211721
SS16UnknownERR211720
SS15UnknownERR211719
SS14UnknownERR211718
SS13UnknownERR211717
FX543_1UnknownERR211716
FX540_1UnknownERR211715
FX535_2UnknownERR211714
FX527_2UnknownERR211713
FX507_1UnknownERR211712
FX501UnknownERR211711
FX483_3UnknownERR211710
FX478UnknownERR211709
FX431UnknownERR211708
FX415_6UnknownERR211705
FX336_2UnknownERR211704
FX328_4UnknownERR211703
FX275UnknownERR211702
FX230UnknownERR211701
FX211UnknownERR211700
FX184_2UnknownERR211699
CTU02SS-DN026UnknownERR211794
CTU02SS-DN025UnknownERR211793
01ZN-ST222UnknownERR211792
01ZN-TG189UnknownERR211791
01ZN-TG187UnknownERR211790
01ZN-TG183UnknownERR211789
VS3888UnknownERR211788
VS3886UnknownERR211787
VS3881UnknownERR211786
VS3878UnknownERR211785
VS3865UnknownERR211784
VS3861UnknownERR211783
VS3804UnknownERR211782
VS3756UnknownERR211781
VS3709UnknownERR211780
VS3699UnknownERR211779
VS3640UnknownERR211778
VS3587UnknownERR211777
VS3575UnknownERR211776
VS3569UnknownERR211775
VS3543UnknownERR211774
VS3537UnknownERR211773
VS3517UnknownERR211772
FX428_1UnknownERR211707
FX419UnknownERR211706
BM345BM345ERR047097

Identification of Streptococcus suis genes required for infection of pig nasal septum IVOC using TraDIS

Sample

Strain

Run Accession

Pig1Tn917inP1/7ERR270904
Pig1Tn917inP1/7ERR270914
Pig1Tn917A1P1/7ERR270905
Pig1Tn917A1P1/7ERR270915
Pig1Tn917B1P1/7ERR270906
Pig1Tn917B1P1/7ERR270916
Pig1Tn917A2P1/7ERR270917
Pig1Tn917A2P1/7ERR270907
Pig1Tn917B2P1/7ERR270918
Pig1Tn917B2P1/7ERR270908
Pig2Tn917inP1/7ERR270919
Pig2Tn917inP1/7ERR270909
Pig2Tn917A1P1/7ERR270920
Pig2Tn917A1P1/7ERR270910
Pig2Tn917B1P1/7ERR270921
Pig2Tn917B1P1/7ERR270911
Pig2Tn917A2P1/7ERR270922
Pig2Tn917A2P1/7ERR270912
Pig2Tn917B2P1/7ERR270913
Pig2Tn917B2P1/7ERR270923
Pig1L2inP1/7ERR270925
Pig1L2inP1/7ERR270924
A-I-INP1/7ERR270926
A-I-INP1/7ERR270936
A-I-INP1/7ERR270946
B-I-INP1/7ERR270937
B-I-INP1/7ERR270927
B-I-INP1/7ERR270947
C-I-INP1/7ERR270928
C-I-INP1/7ERR270938
C-I-INP1/7ERR270948
D-I-INP1/7ERR270939
D-I-INP1/7ERR270929
D-I-INP1/7ERR270949
E-I-INP1/7ERR270950
E-I-INP1/7ERR270930
E-I-INP1/7ERR270940
F-I-INP1/7ERR270951
F-I-INP1/7ERR270931
F-I-INP1/7ERR270941
G-I-INP1/7ERR270952
G-I-INP1/7ERR270932
G-I-INP1/7ERR270942
H-I-INP1/7ERR270933
H-I-INP1/7ERR270943
H-I-INP1/7ERR270953
A-I-OP1P1/7ERR270934
A-I-OP1P1/7ERR270944
A-I-OP1P1/7ERR270954
A-I-OP2P1/7ERR270935
A-I-OP2P1/7ERR270945
A-I-OP2P1/7ERR270955
A-1_INP1/7ERR270976
A-1_INP1/7ERR271003
B-1_INP1/7ERR270977
B-1_INP1/7ERR271004
C-1_INP1/7ERR270978
C-1_INP1/7ERR271005
D-1_INP1/7ERR270979
D-1_INP1/7ERR271006
E-1_INP1/7ERR270980
E-1_INP1/7ERR271007
F-1_INP1/7ERR270981
F-1_INP1/7ERR271008
G-1_INP1/7ERR270982
G-1_INP1/7ERR271009
H-1-INP1/7ERR270983
H-1-INP1/7ERR271010
A-H_1_OP1NP1/7ERR270984
A-H_1_OP1NP1/7ERR271011
A-H_1_OP2NP1/7ERR270985
A-H_1_OP2NP1/7ERR271012
A-H_2_INP1/7ERR270971
A-H_2_INP1/7ERR270998
A-H_2_OP1NP1/7ERR270972
A-H_2_OP1NP1/7ERR270999
A-H_2_OP2NP1/7ERR270973
A-H_2_OP2NP1/7ERR271000
A-H_2_OP1TP1/7ERR270974
A-H_2_OP1TP1/7ERR271001
A-H_2_OP2TP1/7ERR270975
A-H_2_OP2TP1/7ERR271002
A-H_3_INP1/7ERR270968
A-H_3_INP1/7ERR271013
A-H_3_OP1TP1/7ERR270969
A-H_3_OP1TP1/7ERR271014
A-H_3_OP2TP1/7ERR270970
A-H_3_OP2TP1/7ERR271015
A-5_INP1/7ERR270956
A-5_INP1/7ERR270986
A_5_OP_brothP1/7ERR270957
A_5_OP_brothP1/7ERR270987
A_5_OP_plateP1/7ERR270958
A_5_OP_plateP1/7ERR270988
C_5_INP1/7ERR270959
C_5_INP1/7ERR270989
C_5_OP_brothP1/7ERR270960
C_5_OP_brothP1/7ERR270990
C_5_OP_plateP1/7ERR270961
C_5_OP_plateP1/7ERR270991
A-H_5_INP1/7ERR270962
A-H_5_INP1/7ERR270992
A-H_5_OP_brothP1/7ERR270963
A-H_5_OP_brothP1/7ERR270993
A-H_5_OP_plateP1/7ERR270964
A-H_5_OP_plateP1/7ERR270994
A-M_5_INP1/7ERR270965
A-M_5_INP1/7ERR270995
A-M_5_OP_brothP1/7ERR270966
A-M_5_OP_brothP1/7ERR270996
A-M_5_OP_plateP1/7ERR270967
A-M_5_OP_plateP1/7ERR270997
M_6_INUnknownERR271050
M_6_INUnknownERR271033
M_6_INUnknownERR271131
M_6_INUnknownERR271114
M_6_INUnknownERR410509
M_6_INUnknownERR410563
M_6_INUnknownERR410617
M_6_INUnknownERR410671
M_6_INUnknownERR410492
M_6_INUnknownERR410546
M_6_INUnknownERR410600
M_6_INUnknownERR410654
L_6_INUnknownERR271049
L_6_INUnknownERR271032
L_6_INUnknownERR271130
L_6_INUnknownERR271113
L_6_INUnknownERR410508
L_6_INUnknownERR410562
L_6_INUnknownERR410616
L_6_INUnknownERR410670
L_6_INUnknownERR410491
L_6_INUnknownERR410545
L_6_INUnknownERR410599
L_6_INUnknownERR410653
K_6_INUnknownERR271048
K_6_INUnknownERR271031
K_6_INUnknownERR271129
K_6_INUnknownERR271112
K_6_INUnknownERR410507
K_6_INUnknownERR410561
K_6_INUnknownERR410615
K_6_INUnknownERR410669
K_6_INUnknownERR410490
K_6_INUnknownERR410544
K_6_INUnknownERR410598
K_6_INUnknownERR410652
J_6_INUnknownERR271047
J_6_INUnknownERR271030
J_6_INUnknownERR271128
J_6_INUnknownERR271111
J_6_INUnknownERR410506
J_6_INUnknownERR410560
J_6_INUnknownERR410614
J_6_INUnknownERR410668
J_6_INUnknownERR410489
J_6_INUnknownERR410543
J_6_INUnknownERR410597
J_6_INUnknownERR410651
I_6_INUnknownERR271046
I_6_INUnknownERR271029
I_6_INUnknownERR271127
I_6_INUnknownERR271110
I_6_INUnknownERR410505
I_6_INUnknownERR410559
I_6_INUnknownERR410613
I_6_INUnknownERR410667
I_6_INUnknownERR410488
I_6_INUnknownERR410542
I_6_INUnknownERR410596
I_6_INUnknownERR410650
A-M_6_OP_5UnknownERR271045
A-M_6_OP_5UnknownERR271028
A-M_6_OP_5UnknownERR271120
A-M_6_OP_5UnknownERR410504
A-M_6_OP_5UnknownERR410558
A-M_6_OP_5UnknownERR410612
A-M_6_OP_5UnknownERR410666
A-M_6_OP_5UnknownERR410479
A-M_6_OP_5UnknownERR410533
A-M_6_OP_5UnknownERR410587
A-M_6_OP_5UnknownERR410641
A-M_6_OP_4UnknownERR271044
A-M_6_OP_4UnknownERR271027
A-M_6_OP_4UnknownERR271119
A-M_6_OP_4UnknownERR410503
A-M_6_OP_4UnknownERR410557
A-M_6_OP_4UnknownERR410611
A-M_6_OP_4UnknownERR410665
A-M_6_OP_4UnknownERR410483
A-M_6_OP_4UnknownERR410537
A-M_6_OP_4UnknownERR410591
A-M_6_OP_4UnknownERR410645
A-M_6_OP_3UnknownERR271043
A-M_6_OP_3UnknownERR271026
A-M_6_OP_3UnknownERR271118
A-M_6_OP_3UnknownERR410502
A-M_6_OP_3UnknownERR410556
A-M_6_OP_3UnknownERR410610
A-M_6_OP_3UnknownERR410664
A-M_6_OP_3UnknownERR410487
A-M_6_OP_3UnknownERR410541
A-M_6_OP_3UnknownERR410595
A-M_6_OP_3UnknownERR410649
A-M_6_OP_2UnknownERR271042
A-M_6_OP_2UnknownERR271025
A-M_6_OP_2UnknownERR271126
A-M_6_OP_2UnknownERR271109
A-M_6_OP_2UnknownERR410501
A-M_6_OP_2UnknownERR410555
A-M_6_OP_2UnknownERR410609
A-M_6_OP_2UnknownERR410663
A-M_6_OP_2UnknownERR410486
A-M_6_OP_2UnknownERR410540
A-M_6_OP_2UnknownERR410594
A-M_6_OP_2UnknownERR410648
A-M_6_OP_1UnknownERR271041
A-M_6_OP_1UnknownERR271024
A-M_6_OP_1UnknownERR271125
A-M_6_OP_1UnknownERR271108
A-M_6_OP_1UnknownERR410500
A-M_6_OP_1UnknownERR410554
A-M_6_OP_1UnknownERR410608
A-M_6_OP_1UnknownERR410662
A-M_6_OP_1UnknownERR410478
A-M_6_OP_1UnknownERR410532
A-M_6_OP_1UnknownERR410586
A-M_6_OP_1UnknownERR410640
A-M_6_IN_5UnknownERR271040
A-M_6_IN_5UnknownERR271023
A-M_6_IN_5UnknownERR271117
A-M_6_IN_5UnknownERR410499
A-M_6_IN_5UnknownERR410553
A-M_6_IN_5UnknownERR410607
A-M_6_IN_5UnknownERR410661
A-M_6_IN_5UnknownERR410482
A-M_6_IN_5UnknownERR410536
A-M_6_IN_5UnknownERR410590
A-M_6_IN_5UnknownERR410644
A-M_6_IN_4UnknownERR271039
A-M_6_IN_4UnknownERR271022
A-M_6_IN_4UnknownERR271116
A-M_6_IN_4UnknownERR410498
A-M_6_IN_4UnknownERR410552
A-M_6_IN_4UnknownERR410606
A-M_6_IN_4UnknownERR410660
A-M_6_IN_4UnknownERR410484
A-M_6_IN_4UnknownERR410538
A-M_6_IN_4UnknownERR410592
A-M_6_IN_4UnknownERR410646
A-M_6_IN_3UnknownERR271038
A-M_6_IN_3UnknownERR271021
A-M_6_IN_3UnknownERR271115
A-M_6_IN_3UnknownERR410497
A-M_6_IN_3UnknownERR410551
A-M_6_IN_3UnknownERR410605
A-M_6_IN_3UnknownERR410659
A-M_6_IN_3UnknownERR410476
A-M_6_IN_3UnknownERR410530
A-M_6_IN_3UnknownERR410584
A-M_6_IN_3UnknownERR410638
A-M_6_IN_2UnknownERR271037
A-M_6_IN_2UnknownERR271020
A-M_6_IN_2UnknownERR271124
A-M_6_IN_2UnknownERR271107
A-M_6_IN_2UnknownERR410496
A-M_6_IN_2UnknownERR410550
A-M_6_IN_2UnknownERR410604
A-M_6_IN_2UnknownERR410658
A-M_6_IN_2UnknownERR410480
A-M_6_IN_2UnknownERR410534
A-M_6_IN_2UnknownERR410588
A-M_6_IN_2UnknownERR410642
A-M_6_IN_1UnknownERR271036
A-M_6_IN_1UnknownERR271019
A-M_6_IN_1UnknownERR271123
A-M_6_IN_1UnknownERR271106
A-M_6_IN_1UnknownERR410495
A-M_6_IN_1UnknownERR410549
A-M_6_IN_1UnknownERR410603
A-M_6_IN_1UnknownERR410657
A-M_6_IN_1UnknownERR410481
A-M_6_IN_1UnknownERR410535
A-M_6_IN_1UnknownERR410589
A-M_6_IN_1UnknownERR410643
A-H_6_OP_nasal_t2UnknownERR271035
A-H_6_OP_nasal_t2UnknownERR271018
A-H_6_OP_nasal_t2UnknownERR271122
A-H_6_OP_nasal_t2UnknownERR271105
A-H_6_OP_nasal_t2UnknownERR410494
A-H_6_OP_nasal_t2UnknownERR410548
A-H_6_OP_nasal_t2UnknownERR410602
A-H_6_OP_nasal_t2UnknownERR410656
A-H_6_OP_nasal_t2UnknownERR410477
A-H_6_OP_nasal_t2UnknownERR410531
A-H_6_OP_nasal_t2UnknownERR410585
A-H_6_OP_nasal_t2UnknownERR410639
A-H_6_INUnknownERR271034
A-H_6_INUnknownERR271017
A-H_6_INUnknownERR271121
A-H_6_INUnknownERR271104
A-H_6_INUnknownERR410493
A-H_6_INUnknownERR410547
A-H_6_INUnknownERR410601
A-H_6_INUnknownERR410655
A-H_6_INUnknownERR410485
A-H_6_INUnknownERR410539
A-H_6_INUnknownERR410593
A-H_6_INUnknownERR410647
A-M_OP_5P1/7ERR410529
A-M_OP_5P1/7ERR410583
A-M_OP_5P1/7ERR410637
A-M_OP_5P1/7ERR410691
A-M_OP_5P1/7ERR410519
A-M_OP_5P1/7ERR410573
A-M_OP_5P1/7ERR410627
A-M_OP_5P1/7ERR410681
A-M_OP_4P1/7ERR410528
A-M_OP_4P1/7ERR410582
A-M_OP_4P1/7ERR410636
A-M_OP_4P1/7ERR410690
A-M_OP_4P1/7ERR410518
A-M_OP_4P1/7ERR410572
A-M_OP_4P1/7ERR410626
A-M_OP_4P1/7ERR410680
A-M_OP_3P1/7ERR410527
A-M_OP_3P1/7ERR410581
A-M_OP_3P1/7ERR410635
A-M_OP_3P1/7ERR410689
A-M_OP_3P1/7ERR410517
A-M_OP_3P1/7ERR410571
A-M_OP_3P1/7ERR410625
A-M_OP_3P1/7ERR410679
A-M_OP_2P1/7ERR410526
A-M_OP_2P1/7ERR410580
A-M_OP_2P1/7ERR410634
A-M_OP_2P1/7ERR410688
A-M_OP_2P1/7ERR410516
A-M_OP_2P1/7ERR410570
A-M_OP_2P1/7ERR410624
A-M_OP_2P1/7ERR410678
A-M_OP_1P1/7ERR410525
A-M_OP_1P1/7ERR410579
A-M_OP_1P1/7ERR410633
A-M_OP_1P1/7ERR410687
A-M_OP_1P1/7ERR410515
A-M_OP_1P1/7ERR410569
A-M_OP_1P1/7ERR410623
A-M_OP_1P1/7ERR410677
A-M_IN_5P1/7ERR410524
A-M_IN_5P1/7ERR410578
A-M_IN_5P1/7ERR410632
A-M_IN_5P1/7ERR410686
A-M_IN_5P1/7ERR410514
A-M_IN_5P1/7ERR410568
A-M_IN_5P1/7ERR410622
A-M_IN_5P1/7ERR410676
A-M_IN_4P1/7ERR410523
A-M_IN_4P1/7ERR410577
A-M_IN_4P1/7ERR410631
A-M_IN_4P1/7ERR410685
A-M_IN_4P1/7ERR410513
A-M_IN_4P1/7ERR410567
A-M_IN_4P1/7ERR410621
A-M_IN_4P1/7ERR410675
A-M_IN_3P1/7ERR410522
A-M_IN_3P1/7ERR410576
A-M_IN_3P1/7ERR410630
A-M_IN_3P1/7ERR410684
A-M_IN_3P1/7ERR410512
A-M_IN_3P1/7ERR410566
A-M_IN_3P1/7ERR410620
A-M_IN_3P1/7ERR410674
A-M_IN_2P1/7ERR410521
A-M_IN_2P1/7ERR410575
A-M_IN_2P1/7ERR410629
A-M_IN_2P1/7ERR410683
A-M_IN_2P1/7ERR410511
A-M_IN_2P1/7ERR410565
A-M_IN_2P1/7ERR410619
A-M_IN_2P1/7ERR410673
A-M_IN_1P1/7ERR410520
A-M_IN_1P1/7ERR410574
A-M_IN_1P1/7ERR410628
A-M_IN_1P1/7ERR410682
A-M_IN_1P1/7ERR410510
A-M_IN_1P1/7ERR410564
A-M_IN_1P1/7ERR410618
A-M_IN_1P1/7ERR410672

Streptococcus suis genome comparisons

Sample

Strain

Run Accession

LOLA-SS001VLA-SS968ERR120017
LOLA-SS002VLA-SS971ERR120018
LOLA-SS003VLA-SS988ERR120019
LOLA-SS004VLA-SS977ERR120020
LOLA-SS005VLA-SS1019ERR120021
LOLA-SS006VLA-SS1020ERR120022
LOLA-SS007VLA-SS1047ERR120023
LOLA-SS008VLA-SS984ERR120024
LOLA-SS009VLA-SS990ERR120025
LOLA-SS010VLA-SS978ERR120026
LOLA-SS011VLA-SS1045ERR120027
LSS1LSS1ERR120121
LSS2LSS2ERR120122
LSS3LSS3ERR120123
LSS4LSS4ERR120124
LSS5LSS5ERR120125
LSS6LSS6ERR120126
LSS7LSS7ERR120127
LSS8LSS8ERR120128
LSS9LSS9ERR120129
LSS10LSS10ERR120130
LSS11LSS11ERR120131
LSS12LSS12ERR120132
LSS13LSS13ERR120133
LSS14LSS14-2ERR120134
LSS15LSS15ERR120135
LSS16LSS16ERR120136
LSS17LSS17ERR120137
LSS18LSS18ERR120138
LSS19LSS19ERR120139
LSS20LSS20-2ERR120140
LSS21LSS21-2ERR120141
LSS22LSS22ERR120142
LSS23LSS23-3ERR120143
LSS24LSS24ERR120144
LSS25LSS25ERR120145
LSS26LSS26ERR120146
LSS27LSS27ERR120147
LSS28LSS28ERR120148
LSS29LSS29ERR120149
LSS30LSS30ERR120150
LSS31LSS31ERR120151
LSS32LSS32ERR120152
LSS33LSS33ERR120153
LSS34LSS34ERR120154
LSS35LSS35ERR120155
LSS36LSS36ERR120156
LSS37LSS37ERR120157
LSS38LSS38-2ERR120158
LSS39LSS39ERR120159
LSS40LSS40ERR120160
LSS41LSS41ERR120161
LSS42LSS42ERR120162
LSS43LSS43ERR120163
LSS44LSS44ERR120164
LSS45LSS45ERR120165
LSS46LSS46ERR120166
LSS47LSS47ERR120167
LSS48LSS48ERR120168
LSS49LSS49ERR120169
LSS50LSS50ERR120170
LSS51LSS51ERR120171
LSS52LSS52ERR120172
LSS53LSS53-2ERR120173
LSS54LSS54ERR120174
LSS55LSS55ERR120175
LSS56LSS56ERR120176
LSS57LSS57ERR120177
LSS58LSS58ERR120178
LSS59LSS59 reERR120179
LSS60LSS60ERR120180
LSS61LSS61ERR120181
LSS62LSS62ERR120182
LSS63LSS63ERR120183
LSS64LSS64ERR120184
LSS65LSS65ERR120185
LSS66LSS66ERR120186
LSS67LSS67ERR120187
LSS68LSS68ERR120188
LSS69LSS69ERR120189
LSS70LSS70ERR120190
LSS71LSS71ERR120191
LSS72LSS72ERR120192
LSS73LSS73ERR120193
LSS74LSS74ERR120194
LSS75LSS75ERR120195
LSS76LSS76-REERR120196
LSS77LSS77-REERR120197
LSS78LSS78ERR120198
LSS79LSS79ERR120199
LSS80LSS80ERR120200
LSS81LSS81ERR120201
LSS82LSS82ERR120202
LSS83LSS83ERR120203
LSS84LSS84ERR120204
LSS85LSS85ERR120205
LSS86LSS86ERR120206
LSS87LSS87ERR120207
LSS88LSS88ERR120208
LSS89LSS89ERR120209
LSS90LSS90ERR120210
LSS91LSS91ERR120211
LSS92LSS92ERR120212
LSS93LSS93ERR120213
LSS94LSS94ERR120214
LSS95LSS95ERR120215
LSS96LSS96ERR120216
LSS97LSS97ERR120028
LSS98LSS98ERR120029
LSS99LSS99ERR120030
LSS100LSS100-2ERR120031
SS969SS969ERR120032
SS970SS970ERR120033
SS972SS972ERR120034
SS973SS973ERR120035
SS974SS974ERR120036
SS976SS976ERR120037
SS979SS979ERR120038
SS980SS980ERR120039
SS998SS998ERR120040
SS1000SS1000ERR120041
SS1001SS1001ERR120042
SS1002SS1002ERR120043
SS1004SS1004ERR120044
SS1005SS1005ERR120045
SS1006SS1006ERR120046
SS1007SS1007ERR120047
SS1009SS1009ERR120048
SS1010SS1010ERR120049
SS1011SS1011ERR120050
SS1012SS1012ERR120051
SS1015SS1015ERR120052
SS1016SS1016ERR120053
SS1017SS1017ERR120054
SS1023SS1023ERR120055
SS1024SS1024ERR120056
SS1025SS1025ERR120057
SS1026SS1026ERR120058
SS1027SS1027ERR120059
SS1029SS1029ERR120060
SS1030SS1030ERR120061
SS1032SS1032ERR120062
SS1033SS1033ERR120063
SS1034SS1034ERR120064
SS1036SS1036ERR120065
SS1038SS1038ERR120066
SS1039SS1039ERR120067
SS1041SS 1041ERR120068
SS1042SS 1042ERR120069
SS1046SS 1046ERR120070
SS1048SS 1048ERR120071
SS1049SS 1049ERR120072
SS1050SS 1050ERR120073
SS1051SS 1051ERR120074
SS1053SS 1053ERR120075
SS1054SS 1054ERR120076
SS1055SS 1055ERR120077
SS1056SS 1056ERR120078
SS1057SS 1057ERR120079
SS1058SS 1058ERR120080
SS1063SS 1063ERR120081
SS1064SS 1064ERR120082
SS1065SS 1065ERR120083
SS1066SS 1066ERR120084
SS1067SS 1067ERR120085
SS1070SS 1070ERR120086
SS1072SS 1072ERR120087
SS1073SS 1073ERR120088
SS967SS967ERR120089
SS975SS975ERR120090
SS981SS981ERR120091
SS982SS982ERR120092
SS983SS983ERR120093
SS985SS985ERR120094
SS986SS986ERR120095
SS987SS987ERR120096
SS989SS989ERR120097
SS991SS991ERR120098
SS992SS992ERR120099
SS993SS993ERR120100
SS994SS994ERR120101
SS995SS995ERR120102
SS996SS996ERR120103
SS997SS997ERR120104
SS999SS999ERR120105
SS1003SS1003ERR120106
SS1008SS1008ERR120107
SS1013SS1013ERR120108
SS1014SS1014ERR120109
SS1018SS1018ERR120110
SS1021SS1021ERR120111
SS1022SS1022ERR120112
SS1028SS1028ERR120113
SS1035SS1035ERR120114
SS1037SS1037ERR120115
SS1040SS1040ERR120116
SS1043SS1043ERR120117
SS1052SS1052ERR120118
SS1061SS1061ERR120119
SS1062SS1062ERR120120

Streptococcus suis in the pig meat supply chain

Sample

Strain

Run Accession

InputP1/7ERR492272
InputP1/7ERR492288
InputP1/7ERR492257
InputP1/7ERR492273
7d-fP1/7ERR492271
7d-fP1/7ERR492287
7d-dP1/7ERR492270
7d-dP1/7ERR492286
7d-wP1/7ERR492269
7d-wP1/7ERR492285
48h-fP1/7ERR492268
48h-fP1/7ERR492284
48h-dP1/7ERR492267
48h-dP1/7ERR492283
48h-wP1/7ERR492266
48h-wP1/7ERR492282
48h-m20P1/7ERR492265
48h-m20P1/7ERR492281
48h-m4P1/7ERR492264
48h-m4P1/7ERR492280
48h-m-20P1/7ERR492263
48h-m-20P1/7ERR492279
24h-m20P1/7ERR492278
24h-m20P1/7ERR492262
24h-m4P1/7ERR492277
24h-m4P1/7ERR492261
24h-m-20P1/7ERR492260
24h-m-20P1/7ERR492276
24h-d-sP1/7ERR492275
24h-d-sP1/7ERR492259
24h-sP1/7ERR492274
24h-sP1/7ERR492258
T3INPUTP1/7ERR662777
T3INPUTP1/7ERR662745
T3INPUTP1/7ERR667306
T3INPUTP1/7ERR667274
T3INPUTP1/7ERR670966
T3INPUTP1/7ERR670934
T3INPUTP1/7ERR662761
T3INPUTP1/7ERR662729
T3INPUTP1/7ERR667290
T3INPUTP1/7ERR667258
T3INPUTP1/7ERR670950
T3INPUTP1/7ERR670918
T2INPUTP1/7ERR662776
T2INPUTP1/7ERR662744
T2INPUTP1/7ERR667305
T2INPUTP1/7ERR667273
T2INPUTP1/7ERR670965
T2INPUTP1/7ERR670933
T2INPUTP1/7ERR662746
T2INPUTP1/7ERR662714
T2INPUTP1/7ERR667275
T2INPUTP1/7ERR667243
T2INPUTP1/7ERR670935
T2INPUTP1/7ERR670903
T3E11P1/7ERR662775
T3E11P1/7ERR662743
T3E11P1/7ERR667304
T3E11P1/7ERR667272
T3E11P1/7ERR670964
T3E11P1/7ERR670932
T3E9P1/7ERR662774
T3E9P1/7ERR662742
T3E9P1/7ERR667303
T3E9P1/7ERR667271
T3E9P1/7ERR670963
T3E9P1/7ERR670931
T3E7P1/7ERR662773
T3E7P1/7ERR662741
T3E7P1/7ERR667302
T3E7P1/7ERR667270
T3E7P1/7ERR670962
T3E7P1/7ERR670930
T3E5P1/7ERR662772
T3E5P1/7ERR662740
T3E5P1/7ERR667301
T3E5P1/7ERR667269
T3E5P1/7ERR670961
T3E5P1/7ERR670929
T3E3P1/7ERR662771
T3E3P1/7ERR662739
T3E3P1/7ERR667300
T3E3P1/7ERR667268
T3E3P1/7ERR670960
T3E3P1/7ERR670928
T3E1P1/7ERR662770
T3E1P1/7ERR662738
T3E1P1/7ERR667299
T3E1P1/7ERR667267
T3E1P1/7ERR670959
T3E1P1/7ERR670927
T3M11P1/7ERR662769
T3M11P1/7ERR662737
T3M11P1/7ERR667298
T3M11P1/7ERR667266
T3M11P1/7ERR670958
T3M11P1/7ERR670926
T3M9P1/7ERR662768
T3M9P1/7ERR662736
T3M9P1/7ERR667297
T3M9P1/7ERR667265
T3M9P1/7ERR670957
T3M9P1/7ERR670925
T3M7P1/7ERR662767
T3M7P1/7ERR662735
T3M7P1/7ERR667296
T3M7P1/7ERR667264
T3M7P1/7ERR670956
T3M7P1/7ERR670924
T3M5P1/7ERR662766
T3M5P1/7ERR662734
T3M5P1/7ERR667295
T3M5P1/7ERR667263
T3M5P1/7ERR670955
T3M5P1/7ERR670923
T3M3P1/7ERR662765
T3M3P1/7ERR662733
T3M3P1/7ERR667294
T3M3P1/7ERR667262
T3M3P1/7ERR670954
T3M3P1/7ERR670922
T3M1P1/7ERR662764
T3M1P1/7ERR662732
T3M1P1/7ERR667293
T3M1P1/7ERR667261
T3M1P1/7ERR670953
T3M1P1/7ERR670921
T3S3P1/7ERR662763
T3S3P1/7ERR662731
T3S3P1/7ERR667292
T3S3P1/7ERR667260
T3S3P1/7ERR670952
T3S3P1/7ERR670920
T3S1P1/7ERR662762
T3S1P1/7ERR662730
T3S1P1/7ERR667291
T3S1P1/7ERR667259
T3S1P1/7ERR670951
T3S1P1/7ERR670919
T2E11P1/7ERR662760
T2E11P1/7ERR662728
T2E11P1/7ERR667289
T2E11P1/7ERR667257
T2E11P1/7ERR670949
T2E11P1/7ERR670917
T2E9P1/7ERR662759
T2E9P1/7ERR662727
T2E9P1/7ERR667288
T2E9P1/7ERR667256
T2E9P1/7ERR670948
T2E9P1/7ERR670916
T2E7P1/7ERR662758
T2E7P1/7ERR662726
T2E7P1/7ERR667287
T2E7P1/7ERR667255
T2E7P1/7ERR670947
T2E7P1/7ERR670915
T2E5P1/7ERR662757
T2E5P1/7ERR662725
T2E5P1/7ERR667286
T2E5P1/7ERR667254
T2E5P1/7ERR670946
T2E5P1/7ERR670914
T2E3P1/7ERR662756
T2E3P1/7ERR662724
T2E3P1/7ERR667285
T2E3P1/7ERR667253
T2E3P1/7ERR670945
T2E3P1/7ERR670913
T2E1P1/7ERR662755
T2E1P1/7ERR662723
T2E1P1/7ERR667284
T2E1P1/7ERR667252
T2E1P1/7ERR670944
T2E1P1/7ERR670912
T2M11P1/7ERR662754
T2M11P1/7ERR662722
T2M11P1/7ERR667283
T2M11P1/7ERR667251
T2M11P1/7ERR670943
T2M11P1/7ERR670911
T2M9P1/7ERR662753
T2M9P1/7ERR662721
T2M9P1/7ERR667282
T2M9P1/7ERR667250
T2M9P1/7ERR670942
T2M9P1/7ERR670910
T2M7P1/7ERR662752
T2M7P1/7ERR662720
T2M7P1/7ERR667281
T2M7P1/7ERR667249
T2M7P1/7ERR670941
T2M7P1/7ERR670909
T2M5P1/7ERR662751
T2M5P1/7ERR662719
T2M5P1/7ERR667280
T2M5P1/7ERR667248
T2M5P1/7ERR670940
T2M5P1/7ERR670908
T2M3P1/7ERR662750
T2M3P1/7ERR662718
T2M3P1/7ERR667279
T2M3P1/7ERR667247
T2M3P1/7ERR670939
T2M3P1/7ERR670907
T2M1P1/7ERR662749
T2M1P1/7ERR662717
T2M1P1/7ERR667278
T2M1P1/7ERR667246
T2M1P1/7ERR670938
T2M1P1/7ERR670906
T2S3P1/7ERR662748
T2S3P1/7ERR662716
T2S3P1/7ERR667277
T2S3P1/7ERR667245
T2S3P1/7ERR670937
T2S3P1/7ERR670905
T2S1P1/7ERR662747
T2S1P1/7ERR662715
T2S1P1/7ERR667276
T2S1P1/7ERR667244
T2S1P1/7ERR670936
T2S1P1/7ERR670904

Streptococcus suis in the pig meat supply chain

Sample

Strain

Run Accession

3098STDY5812796UnknownERR601493
3098STDY5812795UnknownERR601492
3098STDY5812794UnknownERR601491
3098STDY5812793UnknownERR601490
3098STDY5812792UnknownERR601489
3098STDY5812791UnknownERR601488
3098STDY5812789UnknownERR601487
3098STDY5812788UnknownERR601486
3098STDY5812787UnknownERR601485
3098STDY5812786UnknownERR601484
3098STDY5812785UnknownERR601483
3098STDY5812784UnknownERR601482
3098STDY5812783UnknownERR601481
3098STDY5812781UnknownERR601480
3098STDY5812780UnknownERR601479
3098STDY5812779UnknownERR601478
3098STDY5812778UnknownERR601477
3098STDY5812777UnknownERR601476
3098STDY5812776UnknownERR601475
3098STDY5812775UnknownERR601474
3098STDY5812773UnknownERR601473
3098STDY5812772UnknownERR601472
3098STDY5812771UnknownERR601471
3098STDY5812770UnknownERR601470
3098STDY5812769UnknownERR601469
3098STDY5812768UnknownERR601468
3098STDY5812767UnknownERR601467
3098STDY5812765UnknownERR601466
3098STDY5812764UnknownERR601465
3098STDY5812763UnknownERR601464
3098STDY5812762UnknownERR601463
3098STDY5812761UnknownERR601462
3098STDY5812760UnknownERR601461
3098STDY5812759UnknownERR601460
3098STDY5812757UnknownERR601459
3098STDY5812756UnknownERR601458
3098STDY5812755UnknownERR601457
3098STDY5812754UnknownERR601456
3098STDY5812753UnknownERR601455
3098STDY5812752UnknownERR601454
3098STDY5812751UnknownERR601453
3098STDY5812749UnknownERR601452
3098STDY5812748UnknownERR601451
3098STDY5812747UnknownERR601450
3098STDY5812746UnknownERR601449
3098STDY5812745UnknownERR601448
3098STDY5812744UnknownERR601447
3098STDY5812743UnknownERR601446
3098STDY5812741UnknownERR601445
3098STDY5812740UnknownERR601444
3098STDY5812739UnknownERR601443
3098STDY5812738UnknownERR601442
3098STDY5812737UnknownERR601441
3098STDY5812736UnknownERR601440
3098STDY5812735UnknownERR601439
3098STDY5812733UnknownERR601438
3098STDY5812732UnknownERR601437
3098STDY5812731UnknownERR601436
3098STDY5812730UnknownERR601435
3098STDY5812729UnknownERR601434
3098STDY5812728UnknownERR601433
3098STDY5812700UnknownERR601432
3098STDY5812699UnknownERR601431
3098STDY5812698UnknownERR601430
3098STDY5812697UnknownERR601429
3098STDY5812696UnknownERR601428
3098STDY5812695UnknownERR601427
3098STDY5812694UnknownERR601426
3098STDY5812693UnknownERR601425
3098STDY5812692UnknownERR601424
3098STDY5812691UnknownERR601423
3098STDY5812690UnknownERR601422
3098STDY5812689UnknownERR601421
3098STDY5812688UnknownERR601420
3098STDY5812687UnknownERR601419
3098STDY5812686UnknownERR601418
3098STDY5812685UnknownERR601417
3098STDY5812684UnknownERR601416
3098STDY5812683UnknownERR601415
3098STDY5812682UnknownERR601414
3098STDY5812681UnknownERR601413
3098STDY5812680UnknownERR601412
3098STDY5812679UnknownERR601411
3098STDY5812678UnknownERR601410
3098STDY5812677UnknownERR601409
3098STDY5812676UnknownERR601408
3098STDY5812675UnknownERR601407
3098STDY5812674UnknownERR601406
3098STDY5812673UnknownERR601405
3098STDY5812672UnknownERR601404
3098STDY5812671UnknownERR601403
3098STDY5812670UnknownERR601402
3098STDY5812669UnknownERR601401
3098STDY5812668UnknownERR601400
3098STDY5812667UnknownERR601399
3098STDY5812666UnknownERR601398
3098STDY5812665UnknownERR601397
3098STDY5812664UnknownERR601396
3098STDY5812663UnknownERR601395
3098STDY5812662UnknownERR601394
3098STDY5812661UnknownERR601393
3098STDY5812660UnknownERR601392
3098STDY5812659UnknownERR601391
3098STDY5812658UnknownERR601390
3098STDY5812657UnknownERR601389
3098STDY5812656UnknownERR601388
3098STDY5812655UnknownERR601387
3098STDY5812654UnknownERR601386
3098STDY5812653UnknownERR601385
3098STDY5812652UnknownERR601384
3098STDY5812651UnknownERR601383
3098STDY5812650UnknownERR601382
3098STDY5812649UnknownERR601381
3098STDY5812648UnknownERR601380
3098STDY5812647UnknownERR601379
3098STDY5812646UnknownERR601378
3098STDY5812645UnknownERR601377
3098STDY5812644UnknownERR601376
3098STDY5812643UnknownERR601375
3098STDY581264216ERR601374
3098STDY581264116ERR601373
3098STDY5812640N_TERR601372
3098STDY5812639N_TERR601371
3098STDY5812638N_TERR601370
3098STDY581263716ERR601369
3098STDY5812636N_TERR601368
3098STDY581263528ERR601367
3098STDY581263416ERR601366
3098STDY581263316ERR601365
3098STDY5812632N_TERR601364
3098STDY5812631N_TERR601363
3098STDY58126307&8ERR601362
3098STDY5812629N_TERR601361
3098STDY5812628N_TERR601360
3098STDY581262716ERR601359
3098STDY5812626AAERR601358
3098STDY581262516ERR601357
3098STDY58126246&16ERR601356
3098STDY58126236&16ERR601355
3098STDY58126226&16ERR601354
3098STDY58126216&16ERR601353
3098STDY581262022ERR601352
3098STDY5812619AAERR601351
3098STDY581261810ERR601350
3098STDY5812617N_TERR601349
3098STDY5812616N_TERR601348
3098STDY581261516ERR601347
3098STDY581261415ERR601346
3098STDY5812613N_TERR601345
3098STDY581261216ERR601344
3098STDY581261120ERR601343
3098STDY5812610N_TERR601342
3098STDY581260922ERR601341
3098STDY581260822ERR601340
3098STDY581260716ERR601339
3098STDY581260612ERR601338
  • Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.

    Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB, Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM, Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C, Bentley S, Barrell BG, Schultsz C, Maskell DJ and Parkhill J

    PloS one 2009;4;7;e6072

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/e0whxgqc