Streptococcus pneumoniae

Streptococcus pneumoniae (the pneumococcus) is a facultatively anaerobic Gram positive bacterium which normally resides harmlessly within the human nasopharynx but is a major cause of morbidity and mortality worldwide, causing diseases that range in severity from meningitis, septicaemia, and pneumonia to sinusitis and acute otitis media. Rates of carriage are highest in infants and the elderly and much lower in other adults.

Data Downloads

[Genome Research Limited]

The Sanger Institute has a program of activities focused on Streptococcus pneumoniae including reference genomes, comparative genomics, deep sequencing within lineages and capsule biosynthesis loci sequencing.


Projects

  • Sequencing of cps loci for 90 different serotypes.
  • Genome of a representative of the S. pneumoniaeSpain23F sequence type 81 lineage
  • Other reference genomes: INV104B (ST 227, serotype 1), INV200 (ST 9, serotype 14), OXC141 (ST 180, serotype 3), A45 (serotype 3)
  • Comparative genomics within ST180 (strains 03_4156, 03_4183, 07_2838, 99_4038, 99_4039, 02_1198).
  • Comparative genomics within serotype 1 (strains P1041, INV104B, 03_2672, 03_3038, 06_1370, NCTC7465)
  • Deep sequencing within S. pneumoniaeSpain23F sequence type 81 lineage (200+ isolates)
  • Repeat sequence analysis; annotation software can be downloaded here


Collaborators (in no particular order)

Brian Spratt, Imperial College, UK

Tim Mitchell, University of Glasgow, UK

Peter Andrew, University of Leicester, UK

Keith Klugman, Emory University, USA

Anne von Gottburg, NICD, South Africa

Lesley McGee, CDC, USA

Kwan Soo Ko, ARFID, South Korea

Steve Baker, OUCRU, Vietnam

Lotte Lambertsen, SSI, Denmark

Mark van der Linden, NRCS, Germany

Bruno Pichon, HPA, UK

Bill Hanage, Imperial College, UK

Margit Kaltoft, Streptococcus Unit, Statens Serum Institut, Denmark


Funding

This work has been funded by the Wellcome Trust and World Health Organisation

Published Genome Data

Published Sequence

S. pneumoniae type 23F (Spanish 23F-1), is a multiple antibiotic resistant pandemic strain. The genome has a size of 2,221,315 bp and was sequenced in collaboration with in collaboration with Prof. Tim Mitchell of the Division of Infection and Immunity, Institute of Biomedical and Life Sciences, University of Glasgow, and Prof. Peter William Andrew of the Department of Microbiology and Immunology, Univesity of Leicester. The fully annotated genome is available from the EMBL/GenBank databases with accession number FM211187.

The genomes of strains INV104B (ST 227, serotype 1), INV200 (ST 9, serotype 14) and OXC141 (ST 180, serotype 3) are fully sequenced, annotated and published. The fully annotated genomes are available from the EMBL/GenBank databases with accession numbers FQ312030, FQ312029 and FQ312027 respectively.

Shotgun and assembly data from these projects are also available from our ftp site.

The genome of strain SPNA45 is fully sequenced, annotated and published. The fully annotated genome is available from the EMBL/GenBank databases with accession number HE983624.

The fully assembled and published draft genomes of the following strains are also available from the EMBL/GenBank databases:

Assembled contigs of the following draft genomes have been published and made available from the EMBL/GenBank databases:

Capsular Polysaccharide Biosynthetic Clusters

The Sanger Institute was funded by The World Health Organisation to sequence each of the 90 capsular polysaccharide (cps) biosynthetic clusters of S. pneumoniae in collaboration with Prof. Brian Spratt of the Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College, London and Dr. Margit Kaltoft of the Streptococcus Unit, Statens Serum Institut, Denmark.

Knowledge of the full complement of capsule sequences should be important for surveillance and vaccine research.

Each cps cluster was amplified by long-PCR using primers in the conserved flanking dexB and aliA as described in Jiang et al., and the PCR product sequenced by the shotgun technique. Sizes range from 13844 to 30298 bp.

All 90 sequences are finished, annotated and published. Sequences are available for searching on our Blast Server. Sequences and preliminary annotations are available for download from our FTP site.

Studies

Streptococcus pneumoniae transcriptomics

Sample

Strain

Run Accession

23F transcript 1aUnknownERR015602
23F_OD_0.8UnknownERR015601
23F_single_strdUnknownERR015608
23F_double_strdUnknownERR015604
23F_double_strdUnknownERR019278
99-4038UnknownERR019277
99-4038UnknownERR015605
99-4039UnknownERR019276
99-4039UnknownERR015606
4038_7_2UnknownERR015600
4038_7_2UnknownERR015603
4039_2UnknownERR015599
4039_2UnknownERR015607
4038_7_44038_7ERR220392
4039_44039ERR220393
TR1TR1ERR025176
TR2TR2ERR025180
TR3TR3ERR025181
TR4TR4ERR025182
TR5TR5ERR025183
TR7TR7ERR025184
TR8TR8ERR025185
TR9TR9ERR025186
TR10TR10ERR025187
TR11TR11ERR025177
TR12TR12ERR025178
TR13TR13ERR025179
TR14TR14ERR025807
TR15TR15ERR025811
TR17TR17ERR025812
TR18TR18ERR025813
TR19TR19ERR025814
TR20TR20ERR025815
TR22TR22ERR025816
TR24TR24ERR025817
TR25TR25ERR025818
TR26TR26ERR025808
TR27TR27ERR025809
TR29TR29ERR025810
TR31TR31ERR025189
TR32TR32ERR025193
TR33TR33ERR025194
TR34TR34ERR025195
TR35TR35ERR025196
TR36TR36ERR025197
TR37TR37ERR025198
TR38TR38ERR025199
TR39TR39ERR025200
TR42TR42ERR025190
TR43TR43ERR025191
TR44TR44ERR025192
TR45TR45ERR025202
TR46TR46ERR025206
TR47TR47ERR025207
TR48TR48ERR025208
TR49TR49ERR025209
TR50TR50ERR025210
TR51TR51ERR025211
TR52TR52ERR025212
TR53TR53ERR025213
TR54TR54ERR025203
TR55TR55ERR025204
TR56TR56ERR025205
TR57TR57ERR025215
TR60TR60ERR025219
TR61TR61ERR025220
TR62TR62ERR025221
TR63TR63ERR025222
TR64TR64ERR025223
TR65TR65ERR025224
TR66TR66ERR025225
TR68TR68ERR025226
TR69TR69ERR025216
TR70TR70ERR025217
TR71TR71ERR025218
TR72TR72ERR025228
TR73TR73ERR025232
TR74TR74ERR025233
TR76TR76ERR025234
TR77TR77ERR025235
TR78TR78ERR025236
TR79TR79ERR025237
TR80TR80ERR025238
TR81TR81ERR025239
TR83TR83ERR025229
TR85TR85ERR025230
TR86TR86ERR025231
TR87TR87ERR025241
TR88TR88ERR025245
TR89TR89ERR025246
TR90TR90ERR025247
TR91TR91ERR025248
TR93TR93ERR025249
TR94TR94ERR025250
TR95TR95ERR025251
TR96TR96ERR025252
TR98TR98ERR025242
TR99TR99ERR025243
TR100TR100ERR025244

Population structure and diversity in non-encapsulated Streptococcus pneumoniae

Sample

Strain

Run Accession

0103UnknownERR097350
0104UnknownERR097351
0106UnknownERR097352
0107UnknownERR097353
0119UnknownERR097354
0121UnknownERR097355
0122UnknownERR097356
0123UnknownERR097357
0127UnknownERR097358
0128UnknownERR097359
0139UnknownERR097360
0140UnknownERR097361
0141UnknownERR097278
0142UnknownERR097279
0143UnknownERR097280
0144UnknownERR097281
0145UnknownERR097282
0146UnknownERR097283
0148UnknownERR097284
0149UnknownERR097285
0151UnknownERR097286
0152UnknownERR097287
0154UnknownERR097288
0155UnknownERR097289
0157UnknownERR097290
0158UnknownERR097291
0160UnknownERR097292
0161UnknownERR097293
0164UnknownERR097294
0165UnknownERR097295
0167UnknownERR097296
0170UnknownERR097297
0173UnknownERR097298
0175UnknownERR097299
0176UnknownERR097300
0178UnknownERR097301
0179UnknownERR097302
0203UnknownERR097303
0204UnknownERR097304
0205UnknownERR097305
0206UnknownERR097306
0207UnknownERR097307
0208UnknownERR097308
0209UnknownERR097309
0211UnknownERR097310
0212UnknownERR097311
0216UnknownERR097312
0231UnknownERR097313
0232UnknownERR097314
0233UnknownERR097315
0238UnknownERR097316
0239UnknownERR097317
0240UnknownERR097318
0246UnknownERR097319
0247UnknownERR097320
0252UnknownERR097321
0253UnknownERR097322
0254UnknownERR097323
0256UnknownERR097324
0258UnknownERR097325
0260UnknownERR403444
0264UnknownERR403445
0265UnknownERR403446
0267UnknownERR403447
0268UnknownERR403448
0269UnknownERR403449
0270UnknownERR403450
0272UnknownERR403451
0273UnknownERR403452
0274UnknownERR403453
0275UnknownERR403454
0276UnknownERR403455
0277UnknownERR097326
0278UnknownERR097327
0279UnknownERR097328
0280UnknownERR097329
0301UnknownERR097330
0302UnknownERR097331
0303UnknownERR097332
0304UnknownERR097333
0305UnknownERR097334
0306UnknownERR097335
0307UnknownERR097336
0308UnknownERR097337
0309UnknownERR097338
0310UnknownERR097339
0311UnknownERR097340
0312UnknownERR097341
0313UnknownERR097342
0314UnknownERR097343
0315UnknownERR097344
0326UnknownERR097345
0329UnknownERR097346
0338UnknownERR097347
0339UnknownERR097348
0340UnknownERR097349
0341UnknownERR097233
0342UnknownERR097234
0344UnknownERR097235
0356UnknownERR097236
0357UnknownERR097237
0362UnknownERR097238
0366UnknownERR097239
0368UnknownERR097240
0369UnknownERR097241
0372UnknownERR097242
0373UnknownERR097243
0374UnknownERR097244
0375UnknownERR097245
0376UnknownERR097246
0378UnknownERR097247
0379UnknownERR097248
0380UnknownERR097249
0381UnknownERR097250
16180UnknownERR097251
16188UnknownERR097252
16287UnknownERR097253
32005UnknownERR097254
16077UnknownERR097255
30638UnknownERR097256
30949UnknownERR097257
30973UnknownERR097258
20061UnknownERR097259
208_80UnknownERR097260
207_63UnknownERR097261
101_43UnknownERR097262
104_58UnknownERR097263
104_72UnknownERR097264
106_44UnknownERR097265
111_81UnknownERR097266
202_66UnknownERR097267
203_15UnknownERR097268
205_09UnknownERR097269
208_15UnknownERR097270
FRV026UnknownERR097271
FRV016UnknownERR097272
287_ChinaUnknownERR097273
410_05UnknownERR097274
208_56UnknownERR097275
3308_46UnknownERR097276
3003_06UnknownERR097277
1688s40402-063 (ST448)ERR097362
1688s40507-047 (ST448)ERR097363
1688s4063015 (ST448)ERR097364
1688s407NP7236 (ST344)ERR097365
1688s408LE4251 (ST448)ERR097366
1688s409BR1285 (ST448)ERR097367
1688s410NP7287 (ST448)ERR097368
08b0060408b00604ERR097369
08b1077208b10772ERR097370
08b0308408b03084ERR097371
08b0232008b02320ERR097372
08b0122708b01227ERR097373
1855618556ERR097374
1803718037ERR097375
1857218572ERR097376
30923092ERR097377
1877518775ERR097378
1779317793ERR097379
W01320W01320ERR097380
1851918519ERR097381
58405840ERR097382
1826018260ERR097383
1852818528ERR097384
1881418814ERR097385
W01272W01272ERR097386
W01454W01454ERR097387
W01659W01659ERR097388
W01854W01854ERR097389
W00857W00857ERR097390
1873718737ERR097391
10101010ERR097392
DCC98-1784UnknownERR097402
DCC99-2806UnknownERR097403
DCC96-146UnknownERR097404
DCC96-120UnknownERR097405
DCC96-26UnknownERR097406
DCC96-2763UnknownERR097407
501_24UnknownERR097408
501_14UnknownERR097409
501_20UnknownERR097410
501_30UnknownERR097411
109_44UnknownERR097412
409_63UnknownERR097413
409_64UnknownERR097414
MCIA6DUnknownERR097415
6DUnknownERR097416
36KUnknownERR097417
7JUnknownERR097418
MC1UnknownERR097419
MC2UnknownERR097420
195UnknownERR097421
297UnknownERR097422
0145bUnknownERR097423
0231bUnknownERR097424
0232bUnknownERR097425
0339bUnknownERR097426
0149bUnknownERR097427
0152bUnknownERR097428
0170bUnknownERR097429
0212bUnknownERR097430
0216bUnknownERR097431
0209bUnknownERR097432
0211bUnknownERR097433
0369bUnknownERR097434

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU1NTERR039560
SMRU2NTERR039561
SMRU3NTERR039562
SMRU410AERR039563
SMRU5NTERR039564
SMRU67BERR039565
SMRU77BERR039566
SMRU8NTERR039567
SMRU9NTERR039568
SMRU1033CERR039569
SMRU11NTERR039570
SMRU12NTERR039571
SMRU136BERR039572
SMRU1410AERR039573
SMRU156BERR039574
SMRU16NTERR039575
SMRU1748ERR039576
SMRU186AERR039577
SMRU1919BERR039578
SMRU20NTERR039579
SMRU2135FERR039580
SMRU22NTERR039581
SMRU2335FERR039582
SMRU24NTERR039583
SMRU25NTERR039584
SMRU2617FERR039585
SMRU277FERR039586
SMRU286CERR039587
SMRU2948ERR039588
SMRU3023AERR039589
SMRU316CERR039590
SMRU326AERR039591
SMRU33NTERR039592
SMRU34NTERR039593
SMRU3519BERR039594
SMRU36NTERR039595
SMRU3733CERR039596
SMRU3835FERR039597
SMRU3919BERR039598
SMRU40NTERR039599
SMRU4122FERR039600
SMRU4219AERR039601
SMRU4313ERR039602
SMRU4419AERR039603
SMRU456AERR039604
SMRU46NTERR039605
SMRU4723AERR039606
SMRU4823AERR039607
SMRU49NTERR039608
SMRU506CERR039609
SMRU51NTERR039610
SMRU526AERR039611
SMRU5332AERR039612
SMRU5433DERR039613
SMRU55NTERR039614
SMRU56NTERR039615
SMRU577BERR039616
SMRU5815BERR039617
SMRU59NTERR039618
SMRU6011AERR039619
SMRU6111AERR039620
SMRU6217FERR039621
SMRU6334ERR039622
SMRU64NTERR039623
SMRU6514ERR039624
SMRU66NTERR039625
SMRU67NTERR039626
SMRU6823BERR039627
SMRU6923BERR039628
SMRU706CERR039629
SMRU71NTERR039630
SMRU72NTERR039631
SMRU7313ERR039632
SMRU7419FERR039633
SMRU7511AERR039634
SMRU7623FERR039635
SMRU7714ERR039636
SMRU7819BERR039637
SMRU7914ERR039638
SMRU8019BERR039639
SMRU81NTERR039640
SMRU8210BERR039641
SMRU8310BERR039642
SMRU8411AERR039643
SMRU85NTERR039644
SMRU861ERR039645
SMRU8735FERR039646
SMRU8819FERR039647
SMRU89NTERR039648
SMRU90NTERR039649
SMRU918ERR039650
SMRU92NTERR039651
SMRU9317FERR039652
SMRU9414ERR039653
SMRU9519FERR039654
SMRU9616FERR039655
SMRU9710BERR047894
SMRU984ERR047895
SMRU99NTERR047896
SMRU100NTERR047897
SMRU10124AERR047898
SMRU102NTERR047899
SMRU10319FERR047900
SMRU104NTERR047901
SMRU10519AERR047902
SMRU10635FERR047903
SMRU10735FERR047904
SMRU10822FERR047905
SMRU1094ERR047906
SMRU11021ERR047907
SMRU1114ERR047908
SMRU11233BERR047909
SMRU11323AERR047910
SMRU11419AERR047911
SMRU11535FERR047912
SMRU116NTERR047913
SMRU1172ERR047914
SMRU11833DERR047915
SMRU11922FERR047916
SMRU12015BERR047917
SMRU121NTERR047918
SMRU12219FERR047919
SMRU12328FERR047920
SMRU124NTERR047921
SMRU125NTERR047922
SMRU126NTERR047923
SMRU12715BERR047924
SMRU1283ERR047925
SMRU12920ERR047926
SMRU130NTERR047927
SMRU13119FERR047928
SMRU132NTERR047929
SMRU1336BERR047930
SMRU13414ERR047931
SMRU13514ERR047932
SMRU136NTERR047933
SMRU13723AERR047934
SMRU13823FERR047935
SMRU13928FERR047936
SMRU14028FERR047937
SMRU14132AERR047938
SMRU14219BERR047939
SMRU143NTERR047940
SMRU14428FERR047941
SMRU14532AERR049079
SMRU14628FERR049080
SMRU14714ERR049081
SMRU148NTERR049082
SMRU14933BERR049083
SMRU150NTERR049084
SMRU15123FERR049085
SMRU152NTERR049086
SMRU15323FERR049087
SMRU154NTERR049088
SMRU15546ERR049089
SMRU15635FERR049090
SMRU15733BERR049091
SMRU158NTERR049092
SMRU159NTERR049093
SMRU16010BERR049094
SMRU161NTERR049095
SMRU16235FERR049096
SMRU16319FERR049097
SMRU1644ERR049098
SMRU16510BERR049099
SMRU16615BERR049100
SMRU16735FERR049101
SMRU1686BERR049102
SMRU169NTERR049103
SMRU17023FERR049104
SMRU17134ERR049105
SMRU17217FERR049106
SMRU17311AERR049107
SMRU1743ERR049108
SMRU175NTERR049109
SMRU17614ERR049110
SMRU177NTERR049111
SMRU1786BERR049112
SMRU179NTERR049113
SMRU18040ERR049114
SMRU18110BERR049115
SMRU182NTERR049116
SMRU18311AERR049117
SMRU184NTERR049118
SMRU185NTERR049119
SMRU1864ERR049120
SMRU18719AERR049121
SMRU18822AERR049122
SMRU189NTERR049123
SMRU1906CERR049124
SMRU191NTERR049125
SMRU19223AERR049126
SMRU19323FERR050056
SMRU19419FERR050057
SMRU19537ERR050058
SMRU1963ERR050059
SMRU19721ERR050060
SMRU19823AERR050061
SMRU19911AERR050062
SMRU20011AERR050063
SMRU20132AERR050064
SMRU202NTERR050065
SMRU20319AERR050066
SMRU204NTERR050067
SMRU20514ERR050068
SMRU20646ERR050069
SMRU2073ERR050070
SMRU2087FERR050071
SMRU209NTERR050072
SMRU21023FERR050073
SMRU21115BERR050074
SMRU2126AERR050075
SMRU213NTERR050076
SMRU21416FERR050077
SMRU21528FERR050078
SMRU21628FERR050079
SMRU21720ERR049936
SMRU218NTERR049937
SMRU219NTERR049938
SMRU220NTERR049939
SMRU221NTERR049940
SMRU2223ERR049941
SMRU22314ERR049942
SMRU2246BERR049943
SMRU2256CERR049944
SMRU22623AERR049945
SMRU22732AERR049946
SMRU22814ERR049947
SMRU2296BERR049948
SMRU230NTERR049949
SMRU23123FERR049950
SMRU232NTERR049951
SMRU23319AERR049952
SMRU2349VERR049953
SMRU23519FERR049954
SMRU23620ERR049955
SMRU237NTERR049956
SMRU2389VERR049957
SMRU23933BERR049958
SMRU24032AERR049959
SMRU24128FERR052578
SMRU242NTERR052579
SMRU24346ERR052580
SMRU24423FERR052581
SMRU24533CERR052582
SMRU24623FERR052583
SMRU2474ERR052584
SMRU248NTERR052585
SMRU24911AERR052586
SMRU25010AERR052587
SMRU25135FERR052588
SMRU25234ERR052589
SMRU25323FERR052590
SMRU2543ERR052591
SMRU25533BERR052592
SMRU25614ERR052593
SMRU257NTERR052594
SMRU25834ERR052595
SMRU25919FERR052596
SMRU26019FERR052597
SMRU261NTERR052598
SMRU26235FERR052599
SMRU26316FERR052600
SMRU264NTERR052601
SMRU26535FERR047942
SMRU266NTERR047943
SMRU26723FERR047944
SMRU268NTERR047945
SMRU2694ERR047946
SMRU27014ERR047947
SMRU27111AERR047948
SMRU27211AERR047949
SMRU2736BERR047950
SMRU2746BERR047951
SMRU27523AERR047952
SMRU2763ERR047953
SMRU277NTERR047954
SMRU278NTERR047955
SMRU2796BERR047956
SMRU28014ERR047957
SMRU28119AERR047958
SMRU2825ERR047959
SMRU283NTERR047960
SMRU284NTERR047961
SMRU28519BERR047962
SMRU28619AERR047963
SMRU28733CERR047964
SMRU288NTERR047965
SMRU28916FERR047966
SMRU2906BERR047967
SMRU29122AERR047968
SMRU29240ERR047969
SMRU2933ERR047970
SMRU2943ERR047971
SMRU29514ERR047972
SMRU29611AERR047973
SMRU29711AERR047974
SMRU29833BERR047975
SMRU2995ERR047976
SMRU3006BERR047977
SMRU301NTERR047978
SMRU30233DERR047979
SMRU30323FERR047980
SMRU304NTERR047981
SMRU30514ERR047982
SMRU306NTERR047983
SMRU3077FERR047984
SMRU308NTERR047985
SMRU30915AERR047986
SMRU31010BERR047987
SMRU31110BERR047988
SMRU3124ERR047989
SMRU31346ERR048038
SMRU314NTERR048039
SMRU3156AERR048040
SMRU3166BERR048041
SMRU31715AERR048042
SMRU318NTERR048043
SMRU31914ERR048044
SMRU32023AERR048045
SMRU32123FERR048046
SMRU32232AERR048047
SMRU32314ERR048048
SMRU32414ERR048049
SMRU32522AERR048050
SMRU32615AERR048051
SMRU32733CERR048052
SMRU328NTERR048053
SMRU32934ERR048054
SMRU33032FERR048055
SMRU3319VERR048056
SMRU33233DERR048057
SMRU333NTERR048058
SMRU334NTERR048059
SMRU3356BERR048060
SMRU336NTERR048061
SMRU33716FERR048062
SMRU3383ERR048063
SMRU3391ERR048064
SMRU34035FERR048065
SMRU34137ERR048066
SMRU3424ERR048067
SMRU3436BERR048068
SMRU344NTERR048069
SMRU345NTERR048070
SMRU346NTERR048071
SMRU347NTERR048072
SMRU348NTERR048073
SMRU34935FERR048074
SMRU350NTERR048075
SMRU3513ERR048076
SMRU35235CERR048077
SMRU35334ERR048078
SMRU3543ERR048079
SMRU35514ERR048080
SMRU3568ERR048081
SMRU35735FERR048082
SMRU358NTERR048083
SMRU35923AERR048084
SMRU36014ERR048085
SMRU3616BERR047990
SMRU3626BERR047991
SMRU36319FERR047992
SMRU3643ERR047993
SMRU36515BERR047994
SMRU36619FERR047995
SMRU3676BERR047996
SMRU3686BERR047997
SMRU3696BERR047998
SMRU37019BERR047999
SMRU37123FERR048000
SMRU372NTERR048001
SMRU37315AERR048002
SMRU3743ERR048003
SMRU37535FERR048004
SMRU3763ERR048005
SMRU377NTERR048006
SMRU37823FERR048007
SMRU37911AERR048008
SMRU3806CERR048009
SMRU38119BERR048010
SMRU38219FERR048011
SMRU383NTERR048012
SMRU3846AERR048013
SMRU38516FERR048014
SMRU3866AERR048015
SMRU38733BERR048016
SMRU38835CERR048017
SMRU389NTERR048018
SMRU39037ERR048019
SMRU391NTERR048020
SMRU39235FERR048021
SMRU3936BERR048022
SMRU39410BERR048023
SMRU3954ERR048024
SMRU39623FERR048025
SMRU397NTERR048026
SMRU39819FERR048027
SMRU39934ERR048028
SMRU40015BERR048029
SMRU40134ERR048030
SMRU40214ERR048031
SMRU403NTERR048032
SMRU404NTERR048033
SMRU4054ERR048034
SMRU40615BERR048035
SMRU407NTERR048036
SMRU40814ERR048037
SMRU4096BERR048086
SMRU41023FERR048087
SMRU41118AERR048088
SMRU41219BERR048089
SMRU41314ERR048090
SMRU414NTERR048091
SMRU41510BERR048092
SMRU41632FERR048093
SMRU417NTERR048094
SMRU4186BERR048095
SMRU419NTERR048096
SMRU420NTERR048097
SMRU42123FERR048098
SMRU42232AERR048099
SMRU42323FERR048100
SMRU424NTERR048101
SMRU42515BERR048102
SMRU426NTERR048103
SMRU4277FERR048104
SMRU42810AERR048105
SMRU42910FERR048106
SMRU430NTERR048107
SMRU43119BERR048108
SMRU43217FERR048109
SMRU4336AERR048110
SMRU434NTERR048111
SMRU43514ERR048112
SMRU43623AERR048113
SMRU437NTERR048114
SMRU43819FERR048115
SMRU4393ERR048116
SMRU4407FERR048117
SMRU441NTERR048118
SMRU44216FERR048119
SMRU4439VERR048120
SMRU4446BERR048121
SMRU44510BERR048122
SMRU44614ERR048123
SMRU44723FERR048124
SMRU44813ERR048125
SMRU44934ERR048126
SMRU45015BERR048127
SMRU451NTERR048128
SMRU45220ERR048129
SMRU45311AERR048130
SMRU454NTERR048131
SMRU45523BERR048132
SMRU45635CERR048133
SMRU4576BERR048134
SMRU458NTERR048135
SMRU45914ERR048136
SMRU46019BERR048137
SMRU46114ERR048138
SMRU4625ERR048139
SMRU4635ERR048140
SMRU46433BERR048141
SMRU46528FERR048142
SMRU46614ERR048143
SMRU46721ERR048144
SMRU46815AERR048145
SMRU46918CERR048146
SMRU47014ERR048147
SMRU47114ERR048148
SMRU47223FERR048149
SMRU47337ERR048150
SMRU47434ERR048151
SMRU47511AERR048152
SMRU476NTERR048153
SMRU47719FERR048154
SMRU47814ERR048155
SMRU4796BERR048156
SMRU480NTERR048157
SMRU48114ERR048158
SMRU48214ERR048159
SMRU4839VERR048160
SMRU48419FERR048161
SMRU485NTERR048162
SMRU48614ERR048163
SMRU487NTERR048164
SMRU48811AERR048165
SMRU4896AERR048166
SMRU4905ERR048167
SMRU4914ERR048168
SMRU49223FERR048169
SMRU49314ERR048170
SMRU49419FERR048171
SMRU49519AERR048172
SMRU49623FERR048173
SMRU4976BERR048174
SMRU4983ERR048175
SMRU49918AERR048176
SMRU50032AERR048177
SMRU50114ERR048178
SMRU50220ERR048179
SMRU5036AERR048180
SMRU5046BERR048181
SMRU5056BERR048182
SMRU50613ERR048183
SMRU50734ERR048184
SMRU50823FERR048185
SMRU50935CERR048186
SMRU510NTERR048187
SMRU51123FERR048188
SMRU5121ERR048189
SMRU51332FERR048190
SMRU514NTERR048191
SMRU51520ERR048192
SMRU51623FERR048193
SMRU51719FERR048194
SMRU51814ERR048195
SMRU51910BERR048196
SMRU520NTERR048197
SMRU5219VERR048198
SMRU52248ERR048199
SMRU52323FERR048200
SMRU52419BERR048201
SMRU52535CERR048202
SMRU52623AERR048203
SMRU5277FERR048204
SMRU52828FERR048205
SMRU52919FERR273480
SMRU53019FERR273481
SMRU53134ERR273482
SMRU532NTERR273483
SMRU53315BERR273484
SMRU53420ERR273485
SMRU53533CERR273486
SMRU53623FERR273487
SMRU53719FERR273488
SMRU5386BERR273489
SMRU539NTERR273490
SMRU54019FERR273491
SMRU54135CERR273492
SMRU54223FERR273493
SMRU5433ERR273494
SMRU5447FERR273495
SMRU54538ERR273496
SMRU54623FERR273497
SMRU5476BERR273498
SMRU54810BERR273499
SMRU54915BERR273500
SMRU550NTERR273501
SMRU55134ERR273502
SMRU55219FERR273503
SMRU55311AERR052626
SMRU55411AERR052627
SMRU555NTERR052628
SMRU556NTERR052629
SMRU55710AERR052630
SMRU55821ERR052631
SMRU559NTERR052632
SMRU56035FERR052633
SMRU56119BERR052634
SMRU56210BERR052635
SMRU56316FERR052636
SMRU56423FERR052637
SMRU5654ERR052638
SMRU56623FERR052639
SMRU56714ERR052640
SMRU56823FERR052641
SMRU569NTERR052642
SMRU5706BERR052643
SMRU571NTERR052644
SMRU5726AERR052645
SMRU5733ERR052646
SMRU57423FERR052647
SMRU575NTERR052648
SMRU57619FERR052649

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU577NTERR052650
SMRU578NTERR051412
SMRU57914ERR051413
SMRU58018CERR051414
SMRU58118CERR051415
SMRU58219FERR051416
SMRU5836AERR051417
SMRU58437ERR051418
SMRU585NTERR051419
SMRU586NTERR051420
SMRU587NTERR051421
SMRU588NTERR051422
SMRU58928FERR051423
SMRU59023AERR051424
SMRU59123FERR051425
SMRU5926BERR051426
SMRU59323FERR051427
SMRU594NTERR051428
SMRU595NTERR051429
SMRU59633BERR051430
SMRU597NTERR051431
SMRU5988ERR051432
SMRU59933BERR051433
SMRU600NTERR051434
SMRU60119FERR051435
SMRU602NTERR051436
SMRU60323FERR051437
SMRU60423FERR051438
SMRU60545ERR051439
SMRU606NTERR051440
SMRU6076BERR051441
SMRU608NTERR051442
SMRU609NTERR051443
SMRU61034ERR051444
SMRU61123FERR051445
SMRU612NTERR051446
SMRU6136BERR051447
SMRU61413ERR051448
SMRU6159VERR051449
SMRU6169VERR051450
SMRU61715CERR051451
SMRU61823FERR051452
SMRU61923AERR051453
SMRU62023FERR051454
SMRU6216BERR051455
SMRU62214ERR051456
SMRU62323FERR051457
SMRU624NTERR051458
SMRU62523FERR057735
SMRU62523FERR273504
SMRU626NTERR057736
SMRU626NTERR273505
SMRU62719BERR057737
SMRU62719BERR273506
SMRU62819FERR057738
SMRU62819FERR273507
SMRU629NTERR057739
SMRU629NTERR273508
SMRU63024FERR057740
SMRU63024FERR273509
SMRU63123FERR057741
SMRU63123FERR273510
SMRU63219BERR057742
SMRU63219BERR273511
SMRU63319BERR057743
SMRU63319BERR273512
SMRU6346BERR057744
SMRU6346BERR273513
SMRU63523FERR057745
SMRU63523FERR273514
SMRU63623FERR057746
SMRU63623FERR273515
SMRU63711AERR057747
SMRU63711AERR273516
SMRU63814ERR057748
SMRU63814ERR273517
SMRU639NTERR057749
SMRU639NTERR273518
SMRU64034ERR057750
SMRU64034ERR273519
SMRU64134ERR057751
SMRU64134ERR273520
SMRU64219FERR057752
SMRU64219FERR273521
SMRU64323FERR057753
SMRU64323FERR273522
SMRU64410BERR057754
SMRU64410BERR273523
SMRU64523FERR057755
SMRU64523FERR273524
SMRU64619FERR057756
SMRU64619FERR273525
SMRU64723FERR057757
SMRU64723FERR273526
SMRU64819FERR057758
SMRU64819FERR273527
SMRU64915CERR051459
SMRU6503ERR051460
SMRU6516AERR051461
SMRU652NTERR051462
SMRU65318CERR051463
SMRU65418CERR051464
SMRU6556CERR051465
SMRU65635CERR051466
SMRU6576BERR051467
SMRU6584ERR051468
SMRU6594ERR051469
SMRU66023FERR051470
SMRU661NTERR051471
SMRU66224FERR051472
SMRU66323FERR051473
SMRU66415BERR051474
SMRU66519FERR051475
SMRU66619FERR051476
SMRU66723FERR051477
SMRU66818CERR051478
SMRU66918AERR051479
SMRU67022AERR051480
SMRU671NTERR051481
SMRU67223FERR051482
SMRU67319FERR051483
SMRU6741ERR051484
SMRU675NTERR051485
SMRU67637ERR051486
SMRU67714ERR051487
SMRU678NTERR051488
SMRU67923FERR051489
SMRU68023FERR051490
SMRU68134ERR051491
SMRU68223AERR051492
SMRU68319FERR051493
SMRU68414ERR051494
SMRU68532AERR051495
SMRU68613ERR051496
SMRU687NTERR051497
SMRU688NTERR051498
SMRU689NTERR051499
SMRU69021ERR051500
SMRU691NTERR051501
SMRU6926AERR051502
SMRU69331ERR051503
SMRU694NTERR051504
SMRU695NTERR051505
SMRU69614ERR051506
SMRU69710BERR051507
SMRU69834ERR051508
SMRU69923FERR051509
SMRU700NTERR051510
SMRU70135CERR051511
SMRU70217FERR051512
SMRU703NTERR051513
SMRU70419FERR051514
SMRU70519FERR051515
SMRU70633BERR051516
SMRU70734ERR051517
SMRU70835CERR051518
SMRU709NTERR051519
SMRU71023FERR051520
SMRU71119AERR051521
SMRU712NTERR051522
SMRU713NTERR051523
SMRU71419FERR051524
SMRU715NTERR051525
SMRU71628FERR051526
SMRU71723FERR051527
SMRU71832FERR051528
SMRU71919BERR051529
SMRU72022AERR051530
SMRU721NTERR051531
SMRU72218FERR051532
SMRU72321ERR051533
SMRU72418CERR051534
SMRU72524FERR051535
SMRU7266CERR051536
SMRU72716FERR051537
SMRU72810AERR051538
SMRU72914ERR051539
SMRU73035CERR051540
SMRU73119FERR051541
SMRU7326BERR051542
SMRU73323FERR051543
SMRU7346AERR051544
SMRU73519FERR051545
SMRU73623FERR051546
SMRU737NTERR051547
SMRU738NTERR051548
SMRU73919FERR051549
SMRU74014ERR051550
SMRU74134ERR051551
SMRU74215BERR051552
SMRU74319FERR051553
SMRU74416FERR051554
SMRU7456BERR052602
SMRU7466BERR052603
SMRU747NTERR052604
SMRU7486BERR052605
SMRU74922AERR052606
SMRU750NTERR052607
SMRU7515ERR052608
SMRU75215BERR052609
SMRU75319FERR052610
SMRU754NTERR052611
SMRU75523FERR052612
SMRU756NTERR052613
SMRU75719FERR052614
SMRU75823AERR052615
SMRU75918CERR052616
SMRU76019FERR052617
SMRU76124FERR052618
SMRU762NTERR052619
SMRU763NTERR052620
SMRU7641ERR052621
SMRU765NTERR052622
SMRU7669VERR052623
SMRU76711AERR052624
SMRU76815AERR052625
SMRU76921ERR054509
SMRU77019FERR054510
SMRU77123AERR054511
SMRU772NTERR054512
SMRU7736CERR054513
SMRU77419FERR054514
SMRU77511AERR054515
SMRU77640ERR054516
SMRU7776CERR054517
SMRU7786BERR054518
SMRU77911AERR054519
SMRU78011AERR054520
SMRU78131ERR054521
SMRU782NTERR054522
SMRU78335CERR054523
SMRU78423FERR054524
SMRU78523FERR054525
SMRU78634ERR054526
SMRU78715CERR054527
SMRU78819FERR054528
SMRU789NTERR054529
SMRU79019FERR054530
SMRU79133BERR054531
SMRU79223FERR054532
SMRU79335CERR054533
SMRU79414ERR054534
SMRU79518CERR054535
SMRU79628FERR054536
SMRU797NTERR054537
SMRU79831ERR054538
SMRU79934ERR054539
SMRU8009VERR054540
SMRU80111AERR054541
SMRU8026BERR054542
SMRU80319FERR054543
SMRU8046CERR054544
SMRU805NTERR054545
SMRU80613ERR054546
SMRU80719AERR054547
SMRU80819BERR054548
SMRU809NTERR054549
SMRU81035FERR054550
SMRU81110BERR054551
SMRU81234ERR054552
SMRU81335FERR054553
SMRU81433BERR054554
SMRU81535CERR054555
SMRU81619FERR054556
SMRU81723FERR056683
SMRU81819AERR056684
SMRU81919FERR056685
SMRU820NTERR056686
SMRU821NTERR056687
SMRU82235FERR056688
SMRU82323FERR056689
SMRU824NTERR056690
SMRU82523FERR056691
SMRU82619FERR056692
SMRU8276BERR056693
SMRU82814ERR056694
SMRU82919FERR056695
SMRU830NTERR056696
SMRU83134ERR056697
SMRU83234ERR056698
SMRU83311AERR056699
SMRU8346BERR056700
SMRU8359NERR056701
SMRU83634ERR056702
SMRU83714ERR056703
SMRU83819FERR056704
SMRU83919FERR056705
SMRU84023AERR056706
SMRU84134ERR056707
SMRU84234ERR056708
SMRU84323FERR056709
SMRU844NTERR056710
SMRU845NTERR056711
SMRU84610BERR056712
SMRU84710BERR056713
SMRU848NTERR056714
SMRU8496AERR056715
SMRU850NTERR056716
SMRU85123FERR056717
SMRU85219FERR056718
SMRU85319FERR056719
SMRU85419FERR056720
SMRU85519FERR056721
SMRU856NTERR056722
SMRU85719FERR056723
SMRU858NTERR056724
SMRU85919FERR056725
SMRU86023FERR056726
SMRU86123FERR056727
SMRU86210AERR056728
SMRU86319FERR056729
SMRU86419FERR056730
SMRU86537ERR054557
SMRU86619AERR054558
SMRU86710BERR054559
SMRU86823FERR054560
SMRU8696AERR054561
SMRU8706AERR054562
SMRU8716CERR054563
SMRU872NTERR054564
SMRU87319FERR054565
SMRU8746BERR054566
SMRU8756AERR054567
SMRU87613ERR054568
SMRU87723FERR054569
SMRU878NTERR054570
SMRU8796AERR054571
SMRU880NTERR054572
SMRU881NTERR054573
SMRU88245ERR054574
SMRU88319FERR054575
SMRU88423FERR054576
SMRU88523BERR054577
SMRU886NTERR054578
SMRU88719FERR054579
SMRU88814ERR054580
SMRU88919FERR049960
SMRU890NTERR049961
SMRU89119FERR049962
SMRU892NTERR049963
SMRU89319FERR049964
SMRU8946AERR049965
SMRU895NTERR049966
SMRU89621ERR049967
SMRU89723FERR049968
SMRU89819BERR049969
SMRU899NTERR049970
SMRU90034ERR049971
SMRU90123FERR049972
SMRU902NTERR049973
SMRU903NTERR049974
SMRU904NTERR049975
SMRU90535FERR049976
SMRU906NTERR049977
SMRU9076BERR049978
SMRU908NTERR049979
SMRU90919FERR049980
SMRU91019FERR049981
SMRU91119FERR049982
SMRU91219FERR049983
SMRU913NTERR049984
SMRU914NTERR049985
SMRU91518CERR049986
SMRU916NTERR049987
SMRU91713ERR049988
SMRU918NTERR049989
SMRU91919FERR049990
SMRU92019AERR049991
SMRU921NTERR049992
SMRU9226AERR049993
SMRU92319FERR049994
SMRU924NTERR049995
SMRU92519FERR049996
SMRU92615BERR049997
SMRU92719FERR049998
SMRU92810FERR049999
SMRU92919FERR050000
SMRU93019FERR050001
SMRU93123FERR050002
SMRU93216FERR050003
SMRU9336AERR050004
SMRU93419FERR050005
SMRU93523FERR050006
SMRU93619FERR050007
SMRU93710FERR050008
SMRU9386AERR050009
SMRU93923FERR050010
SMRU94035FERR050011
SMRU94123FERR050012
SMRU942NTERR050013
SMRU943NTERR050014
SMRU94419FERR050015
SMRU9456BERR050016
SMRU946NTERR050017
SMRU947NTERR050018
SMRU9486BERR050019
SMRU94919FERR050020
SMRU9506CERR050021
SMRU9516AERR050022
SMRU952NTERR050023
SMRU95319FERR050024
SMRU95419FERR050025
SMRU9558ERR050026
SMRU95623FERR050027
SMRU957NTERR050028
SMRU95823FERR050029
SMRU95919BERR050030
SMRU96023FERR050031
SMRU96119FERR050032
SMRU962NTERR050033
SMRU96323FERR050034
SMRU964NTERR050035
SMRU9656CERR050036
SMRU966NTERR050037
SMRU96723FERR050038
SMRU968NTERR050039
SMRU96919FERR050040
SMRU970NTERR050041
SMRU97115AERR050042
SMRU972NTERR050043
SMRU97329ERR050044
SMRU974NTERR050045
SMRU975NTERR050046
SMRU9769VERR050047
SMRU97719FERR050048
SMRU97819FERR050049
SMRU97923FERR050050
SMRU98033CERR050051
SMRU9816BERR050052
SMRU98219FERR050053
SMRU98318FERR050054
SMRU98419FERR050055
SMRU98519FERR051555
SMRU98619FERR051556
SMRU98715AERR051557
SMRU98823FERR051558
SMRU98917FERR051559
SMRU9906BERR051560
SMRU9916AERR051561
SMRU99219FERR051562
SMRU99323FERR051563
SMRU994NTERR051564
SMRU995NTERR051565
SMRU996NTERR051566
SMRU997NTERR051567
SMRU9986BERR051568
SMRU99919FERR051569
SMRU100025FERR051570
SMRU100123AERR051571
SMRU10027FERR051572
SMRU10037FERR051573
SMRU100417FERR051574
SMRU1005NTERR051575
SMRU10066BERR051576
SMRU100719FERR051577
SMRU100820ERR051578
SMRU100920ERR056731
SMRU100920ERR273528
SMRU101023FERR056732
SMRU101023FERR273529
SMRU101135FERR056733
SMRU101135FERR273530
SMRU101235CERR056734
SMRU101235CERR273531
SMRU101335CERR056735
SMRU101335CERR273532
SMRU101418CERR056736
SMRU101418CERR273533
SMRU101519FERR056737
SMRU101519FERR273534
SMRU10163ERR056738
SMRU10163ERR273535
SMRU10179VERR056739
SMRU10179VERR273536
SMRU101819FERR056740
SMRU101819FERR273537
SMRU1019NTERR056741
SMRU1019NTERR273538
SMRU1020NTERR056742
SMRU1020NTERR273539
SMRU102123FERR056743
SMRU102123FERR273540
SMRU102219FERR056744
SMRU102219FERR273541
SMRU102313ERR056745
SMRU102313ERR273542
SMRU102423FERR056746
SMRU102423FERR273543
SMRU102519AERR056747
SMRU102519AERR273544
SMRU102623AERR056748
SMRU102623AERR273545
SMRU1027NTERR056749
SMRU1027NTERR273546
SMRU102834ERR056750
SMRU102834ERR273547
SMRU102923FERR056751
SMRU102923FERR273548
SMRU103015AERR056752
SMRU103015AERR273549
SMRU103135FERR056753
SMRU103135FERR273550
SMRU10329VERR056754
SMRU10329VERR273551
SMRU103319FERR051579
SMRU103421ERR051580
SMRU103519FERR051581
SMRU10366CERR051582
SMRU103723FERR051583
SMRU103819FERR051584
SMRU103919FERR051585
SMRU104022AERR051586
SMRU1041NTERR051587
SMRU104223BERR051588
SMRU104323FERR051589
SMRU104423FERR051590
SMRU104535FERR051591
SMRU104619FERR051592
SMRU104725FERR051593
SMRU104834ERR051594
SMRU104922AERR051595
SMRU10506CERR051596
SMRU105119FERR051597
SMRU105222AERR051598
SMRU105310FERR051599
SMRU10546BERR051600
SMRU105522FERR051601
SMRU105619FERR051602
SMRU10577FERR051603
SMRU10586BERR051604
SMRU10593ERR051605
SMRU106019FERR051606
SMRU106119FERR051607
SMRU10626CERR051608
SMRU10636AERR051609
SMRU106419FERR051610
SMRU106519FERR051611
SMRU106633CERR051612
SMRU106723FERR051613
SMRU106811AERR051614
SMRU10699NERR051615
SMRU107011AERR051616
SMRU1071NTERR051617
SMRU107223FERR051618
SMRU107332AERR051619
SMRU107419FERR051620
SMRU107523FERR051621
SMRU107623FERR051622
SMRU1077NTERR051623
SMRU107819FERR051624
SMRU1079NTERR051625
SMRU108019FERR051626
SMRU10816BERR051627
SMRU108216FERR051628
SMRU108319FERR051629
SMRU108419FERR051630
SMRU108515BERR051631
SMRU10866CERR051632
SMRU108723FERR051633
SMRU108815BERR051634
SMRU108919FERR051635
SMRU109035CERR051636
SMRU109116FERR051637
SMRU109213ERR051638
SMRU109319BERR051639
SMRU10946BERR051640
SMRU109519FERR051641
SMRU109640ERR051642
SMRU10977BERR051643
SMRU109823FERR051644
SMRU10997FERR051645
SMRU110046ERR051646
SMRU110119FERR051647
SMRU110233BERR051648
SMRU11036AERR051649
SMRU1104NTERR051650
SMRU11056BERR051651
SMRU110614ERR051652
SMRU110723FERR051653
SMRU110822FERR051654
SMRU110915CERR051655
SMRU111031ERR051656
SMRU1111NTERR051657
SMRU111215BERR051658
SMRU111315AERR051659
SMRU1114NTERR051660
SMRU111518CERR051661
SMRU111619AERR051662
SMRU111723FERR051663
SMRU111811AERR051664
SMRU1119NTERR051665
SMRU11206BERR051666
SMRU11216BERR051667
SMRU11226BERR051668
SMRU112319FERR051669
SMRU112411AERR051670
SMRU112523FERR051671
SMRU112632FERR051672
SMRU112715CERR051673
SMRU112819BERR051674
SMRU112923AERR054581
SMRU1130NTERR054582
SMRU11313ERR054583
SMRU113219FERR054584
SMRU113323FERR054585
SMRU11346BERR054586
SMRU1135NTERR054587
SMRU113619FERR054588
SMRU113715BERR054589
SMRU11386BERR054590
SMRU113923FERR054591
SMRU114033CERR054592
SMRU114122FERR054593
SMRU114219FERR054594
SMRU114315BERR054595
SMRU114423FERR054596
SMRU11456BERR054597
SMRU1146NTERR054598
SMRU114723FERR054599
SMRU114821ERR054600
SMRU114923FERR054601
SMRU115019FERR054602
SMRU115119FERR054603
SMRU115233BERR054604

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU115319FERR054605
SMRU1154NTERR054606
SMRU115541FERR054607
SMRU11566BERR054608
SMRU115721ERR054609
SMRU115835FERR054610
SMRU11596CERR054611
SMRU11609NERR054612
SMRU11616BERR054613
SMRU11627BERR054614
SMRU116323AERR054615
SMRU116410FERR054616
SMRU116518CERR054617
SMRU1166NTERR054618
SMRU116710BERR054619
SMRU1168NTERR054620
SMRU11696BERR054621
SMRU117015AERR054622
SMRU11716AERR054623
SMRU11726AERR054624
SMRU117333BERR054625
SMRU11749VERR054626
SMRU117510AERR054627
SMRU117633BERR054628
SMRU1177NTERR054629
SMRU117823FERR054630
SMRU117914ERR054631
SMRU118010BERR054632
SMRU118123FERR054633
SMRU11821ERR054634
SMRU118317FERR054635
SMRU1184NTERR054636
SMRU1185NTERR054637
SMRU118619AERR054638
SMRU118723AERR054639
SMRU118834ERR054640
SMRU119019FERR054641
SMRU119133BERR054642
SMRU119223FERR054643
SMRU119322AERR054644
SMRU119429ERR054645
SMRU119535CERR054646
SMRU119619FERR054647
SMRU11976AERR054648
SMRU119819FERR054649
SMRU119913ERR054650
SMRU120035FERR054651
SMRU120114ERR054294
SMRU12023ERR054295
SMRU12036BERR054296
SMRU12043ERR054297
SMRU120535CERR054298
SMRU12068ERR054299
SMRU120715CERR054300
SMRU120823AERR054301
SMRU120935FERR054302
SMRU121032FERR054303
SMRU121122FERR054304
SMRU121215BERR054305
SMRU121311AERR054306
SMRU12149VERR054307
SMRU121523FERR054308
SMRU121619FERR054309
SMRU121734ERR054310
SMRU12186BERR054311
SMRU121923FERR054312
SMRU12206BERR054313
SMRU122115CERR054314
SMRU122235CERR054315
SMRU122321ERR054316
SMRU12246AERR054317
SMRU122519FERR054318
SMRU122623FERR054319
SMRU12276CERR054320
SMRU1228NTERR054321
SMRU122918CERR054322
SMRU123019FERR054323
SMRU12316BERR054324
SMRU123210AERR054325
SMRU12336AERR054326
SMRU123414ERR054327
SMRU1235NTERR054328
SMRU123622AERR054329
SMRU12376BERR054330
SMRU123841FERR054331
SMRU123922AERR054332
SMRU124016FERR054333
SMRU124115AERR054334
SMRU124219FERR054335
SMRU124323FERR054336
SMRU12446AERR054337
SMRU12456BERR054338
SMRU124610BERR054339
SMRU12476BERR054340
SMRU124828FERR054341
SMRU124923FERR054342
SMRU125023FERR054343
SMRU12516BERR054344
SMRU1252NTERR054345
SMRU125310AERR054346
SMRU125416FERR054347
SMRU125516FERR054348
SMRU125623FERR054349
SMRU1257NTERR054350
SMRU125819FERR054351
SMRU12596BERR054352
SMRU12606AERR054353
SMRU126133BERR054354
SMRU126219FERR054355
SMRU126333BERR054356
SMRU126419FERR054357
SMRU12654ERR054358
SMRU12666BERR054359
SMRU126723FERR054360
SMRU126823BERR054361
SMRU1269NTERR054362
SMRU1270NTERR054363
SMRU127133BERR054364
SMRU127219FERR054365
SMRU127319FERR054366
SMRU127414ERR054367
SMRU12756CERR054368
SMRU12766BERR054369
SMRU127719AERR054370
SMRU127819FERR054371
SMRU1279NTERR054372
SMRU128015CERR054373
SMRU128119FERR054374
SMRU128219FERR054375
SMRU128323FERR054376
SMRU128419FERR054377
SMRU128519FERR054378
SMRU128623FERR054379
SMRU1287NTERR054380
SMRU128823FERR054381
SMRU128923BERR054382
SMRU129023FERR054383
SMRU129113ERR054384
SMRU129231ERR054385
SMRU12936AERR054386
SMRU129419FERR054387
SMRU12957FERR054388
SMRU129619FERR054389
SMRU129714ERR054390
SMRU129814ERR054391
SMRU129921ERR054392
SMRU130022AERR054393
SMRU130119BERR054394
SMRU130216FERR054395
SMRU130334ERR054396
SMRU130419FERR054397
SMRU130519FERR054398
SMRU13066BERR054399
SMRU130746ERR054400
SMRU130818CERR054401
SMRU130915BERR054402
SMRU131019FERR054403
SMRU131117FERR054404
SMRU131223FERR054405
SMRU131323FERR054406
SMRU131418CERR054407
SMRU131523FERR054408
SMRU131623BERR054409
SMRU131714ERR054410
SMRU131819FERR054411
SMRU13196AERR054412
SMRU132015AERR054413
SMRU132138ERR060029
SMRU1322NTERR060030
SMRU132315BERR060031
SMRU132433BERR060032
SMRU132523FERR060033
SMRU132623FERR060034
SMRU132714ERR060035
SMRU132810AERR060036
SMRU132923FERR060037
SMRU133018CERR060038
SMRU133146ERR060039
SMRU1332NTERR060040
SMRU133313ERR060041
SMRU13346BERR060042
SMRU1335NTERR060043
SMRU13366BERR060044
SMRU133710FERR060045
SMRU133814ERR060046
SMRU133935BERR060047
SMRU1340NTERR060048
SMRU13416BERR060049
SMRU134216FERR060050
SMRU1343NTERR060051
SMRU134414ERR060052
SMRU134523FERR054222
SMRU134610AERR054223
SMRU134734ERR054224
SMRU134823FERR054225
SMRU134946ERR054226
SMRU135034ERR054227
SMRU135113ERR054228
SMRU13526BERR054229
SMRU135335FERR054230
SMRU135423FERR054231
SMRU1355NTERR054232
SMRU135633BERR054233
SMRU135719FERR054234
SMRU135833BERR054235
SMRU13596BERR054236
SMRU13605ERR054237
SMRU136117FERR054238
SMRU136223FERR054239
SMRU13639VERR054240
SMRU136419FERR054241
SMRU136513ERR054242
SMRU136616FERR054243
SMRU1367NTERR054244
SMRU136834ERR054245
SMRU136919FERR054246
SMRU13706AERR054247
SMRU137138ERR054248
SMRU137219FERR054249
SMRU137335CERR054250
SMRU137419FERR054251
SMRU137522AERR054252
SMRU137623FERR054253
SMRU1377NTERR054254
SMRU1378NTERR054255
SMRU137923FERR054256
SMRU138010BERR054257
SMRU1381NTERR054258
SMRU138215AERR054259
SMRU138346ERR054260
SMRU13843ERR054261
SMRU138523FERR054262
SMRU138614ERR054263
SMRU138734ERR054264
SMRU138819FERR054265
SMRU138923FERR054266
SMRU1390NTERR054267
SMRU13916BERR054268
SMRU139219AERR054269
SMRU139335FERR054270
SMRU139414ERR054271
SMRU139534ERR054272
SMRU139623FERR054273
SMRU1397NTERR054274
SMRU139810AERR054275
SMRU139914ERR054276
SMRU140015BERR054277
SMRU140119FERR054278
SMRU14023ERR054279
SMRU140319FERR054280
SMRU140433BERR054281
SMRU14053ERR054282
SMRU14066BERR054283
SMRU140733BERR054284
SMRU140819FERR054285
SMRU140917FERR054286
SMRU14106AERR054287
SMRU141123FERR054288
SMRU141223FERR054289
SMRU141323FERR054290
SMRU141423FERR054291
SMRU141513ERR054292
SMRU14169NERR054293
SMRU141714ERR056755
SMRU141819FERR056756
SMRU141913ERR056757
SMRU142023FERR056758
SMRU14217BERR056759
SMRU14229NERR056760
SMRU142319FERR056761
SMRU142415BERR056762
SMRU142534ERR056763
SMRU142614ERR056764
SMRU142735CERR056765
SMRU142814ERR056766
SMRU142923FERR056767
SMRU143034ERR056768
SMRU14316BERR056769
SMRU14323ERR056770
SMRU143323FERR056771
SMRU14343ERR056772
SMRU143515BERR056773
SMRU143614ERR056774
SMRU143735CERR056775
SMRU143840ERR056776
SMRU143919FERR056777
SMRU144021ERR056778
SMRU144111AERR056779
SMRU144215BERR056780
SMRU144338ERR056781
SMRU14446AERR056782
SMRU144514ERR056783
SMRU14466BERR056784
SMRU14476AERR056785
SMRU1448NTERR056786
SMRU144914ERR056787
SMRU145019FERR056788
SMRU1451NTERR056789
SMRU1452NTERR056790
SMRU145319FERR056791
SMRU145415BERR056792
SMRU14553ERR056793
SMRU145628FERR056794
SMRU14579NERR056795
SMRU145823FERR056796
SMRU145914ERR056797
SMRU1460NTERR056798
SMRU146122AERR056799
SMRU146229ERR056800
SMRU146323FERR056801
SMRU146446ERR056802
SMRU1465NTERR054414
SMRU146623FERR054415
SMRU146719AERR054416
SMRU146823FERR054417
SMRU1469NTERR054418
SMRU147021ERR054419
SMRU147115AERR054420
SMRU147219FERR054421
SMRU14736BERR054422
SMRU147414ERR054423
SMRU147515BERR054424
SMRU147646ERR054425
SMRU14779NERR054426
SMRU147815CERR054427
SMRU147923FERR054428
SMRU148010BERR054429
SMRU148119FERR054430
SMRU148223FERR054431
SMRU148321ERR054432
SMRU148423FERR054433
SMRU14853ERR054434
SMRU148614ERR054435
SMRU148729ERR054436
SMRU1488NTERR054437
SMRU14896BERR054438
SMRU149012FERR054439
SMRU149134ERR054440
SMRU149219FERR054441
SMRU149323FERR054442
SMRU1494NTERR054443
SMRU149615BERR054444
SMRU149719FERR054445
SMRU149829ERR054446
SMRU149915CERR054447
SMRU15006AERR054448
SMRU150123FERR054449
SMRU150240ERR054450
SMRU150323FERR054451
SMRU150416FERR054452
SMRU150534ERR054453
SMRU150619FERR054454
SMRU15079NERR054455
SMRU1508NTERR054456
SMRU150923FERR054457
SMRU151035FERR054458
SMRU1511NTERR054459
SMRU151215CERR054460
SMRU151319FERR054461
SMRU151415AERR054462
SMRU151519FERR054463
SMRU151614ERR054464
SMRU151719FERR054465
SMRU151819FERR054466
SMRU1519NTERR054467
SMRU15206BERR054468
SMRU152110BERR054469
SMRU1522NTERR054470
SMRU152313ERR054471
SMRU152414ERR054472
SMRU15257BERR054473
SMRU152635CERR054474
SMRU152722AERR054475
SMRU152819FERR054476
SMRU152910AERR054477
SMRU153014ERR054478
SMRU153123FERR054479
SMRU153222FERR054480
SMRU15336AERR054481
SMRU153415AERR054482
SMRU153515BERR054483
SMRU153619FERR054484
SMRU1537NTERR054485
SMRU153815CERR054486
SMRU153915CERR054487
SMRU1540NTERR054488
SMRU154111AERR054489
SMRU154215AERR054490
SMRU154319FERR054491
SMRU154434ERR054492
SMRU15456CERR054493
SMRU15466BERR054494
SMRU154723FERR054495
SMRU1548NTERR054496
SMRU154921ERR054497
SMRU155023FERR054498
SMRU155135FERR054499
SMRU15526BERR054500
SMRU155323FERR054501
SMRU155435CERR054502
SMRU1555NTERR054503
SMRU155633BERR054504
SMRU155733BERR054505
SMRU155819AERR054506
SMRU155934ERR054507
SMRU156019AERR054508
SMRU156119FERR057759
SMRU1562NTERR057760
SMRU156334ERR057761
SMRU156434ERR057762
SMRU156515CERR057763
SMRU15666AERR057764
SMRU15674ERR057765
SMRU156823FERR057766
SMRU156923FERR057767
SMRU15706AERR057768
SMRU157119FERR057769
SMRU157219FERR057770
SMRU157323FERR057771
SMRU1574NTERR057772
SMRU157523FERR057773
SMRU15766BERR057774
SMRU157729ERR057775
SMRU157814ERR057776
SMRU157919FERR057777
SMRU158018CERR057778
SMRU158114ERR057779
SMRU158215BERR057780
SMRU158329ERR057781
SMRU158423FERR057782
SMRU158523FERR057783
SMRU1586NTERR057784
SMRU158719FERR057785
SMRU15886AERR057786
SMRU158923FERR057787
SMRU159019FERR057788
SMRU159119FERR057789
SMRU15926AERR057790
SMRU159323FERR057791
SMRU159419FERR057792
SMRU159510BERR057793
SMRU159634ERR057794
SMRU159718CERR057795
SMRU159819FERR057796
SMRU1599NTERR057797
SMRU160019FERR057798
SMRU160119AERR057799
SMRU1602NTERR057800
SMRU160323FERR057801
SMRU160437ERR057802
SMRU1605NTERR057803
SMRU160615CERR057804
SMRU160717FERR057805
SMRU160819FERR057806
SMRU160919FERR057807
SMRU16106AERR057808
SMRU1611NTERR057809
SMRU161215CERR057810
SMRU1613NTERR057811
SMRU161414ERR057812
SMRU16156BERR057813
SMRU1616NTERR057814
SMRU161710AERR057815
SMRU16186AERR057816
SMRU161910BERR057817
SMRU162014ERR057818
SMRU162134ERR057819
SMRU162223AERR057820
SMRU1623NTERR057821
SMRU162415BERR057822
SMRU162523FERR057823
SMRU1626NTERR057824
SMRU162719FERR057825
SMRU162834ERR057826
SMRU162919AERR057827
SMRU163019FERR057828
SMRU16316BERR057829
SMRU163334ERR059957
SMRU1634NTERR059958
SMRU163515AERR059959
SMRU163615BERR059960
SMRU163719FERR059961
SMRU163823FERR059962
SMRU163934ERR059963
SMRU164013ERR059964
SMRU164118CERR059965
SMRU164211AERR059966
SMRU164323FERR059967
SMRU164435FERR059968
SMRU164523FERR059969
SMRU164615BERR059970
SMRU164719FERR059971
SMRU164823FERR059972
SMRU1649NTERR059973
SMRU165015AERR059974
SMRU16516AERR059975
SMRU165219AERR059976
SMRU1653NTERR059977
SMRU165419FERR059978
SMRU16556AERR059979
SMRU16566AERR059980
SMRU1657NTERR056803
SMRU16586BERR056804
SMRU165915AERR056805
SMRU166019FERR056806
SMRU166119FERR056807
SMRU166214ERR056808
SMRU16637FERR056809
SMRU166419AERR056810
SMRU1665NTERR056811
SMRU166619FERR056812
SMRU16676BERR056813
SMRU1668NTERR056814
SMRU166919FERR056815
SMRU167033BERR056816
SMRU167119FERR056817
SMRU167223FERR056818
SMRU16736BERR056819
SMRU167414ERR056820
SMRU167535FERR056821
SMRU167619FERR056822
SMRU167735FERR056823
SMRU167819FERR056824
SMRU1679NTERR056825
SMRU168014ERR056826
SMRU16816AERR056827
SMRU168214ERR056828
SMRU168323FERR056829
SMRU16849NERR056830
SMRU16856BERR056831
SMRU1686NTERR056832
SMRU168719FERR056833
SMRU168835FERR056834
SMRU168919AERR056835
SMRU169015AERR056836
SMRU169119AERR056837
SMRU169223FERR056838
SMRU169315BERR056839
SMRU169423FERR056840
SMRU16956BERR056841
SMRU169619FERR056842
SMRU169731ERR056843
SMRU169810FERR056844
SMRU169919AERR056845
SMRU170023FERR056846
SMRU170115AERR056847
SMRU170232FERR056848
SMRU170315BERR056849
SMRU170435CERR056850
SMRU170523AERR056851
SMRU170633CERR056852
SMRU170723FERR056853
SMRU1708NTERR056854
SMRU170935CERR056855
SMRU171014ERR056856
SMRU171110BERR056857
SMRU171234ERR056858
SMRU1713NTERR056859
SMRU17146AERR056860
SMRU17156BERR056861
SMRU171635CERR056862
SMRU17176CERR056863
SMRU171819AERR056864
SMRU171913ERR056865
SMRU172014ERR056866
SMRU172119FERR056867
SMRU172223FERR056868
SMRU172323FERR056869
SMRU17246CERR056870
SMRU1725NTERR056871
SMRU1726NTERR056872
SMRU172714ERR056873
SMRU172834ERR056874

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU172918CERR056875
SMRU17306CERR056876
SMRU173121ERR056877
SMRU173224FERR056878
SMRU1733NTERR056879
SMRU17346AERR056880
SMRU173619FERR056881
SMRU1737NTERR056882
SMRU173831ERR056883
SMRU173919FERR056884
SMRU174010BERR056885
SMRU174110BERR056886
SMRU174215BERR056887
SMRU174314ERR056888
SMRU174421ERR056889
SMRU174519AERR056890
SMRU174610BERR056891
SMRU174720ERR056892
SMRU174835CERR056893
SMRU17496CERR056894
SMRU175024FERR056895
SMRU17516BERR056896
SMRU1752NTERR056897
SMRU175333BERR059981
SMRU175419FERR059982
SMRU175519FERR059983
SMRU175629ERR059984
SMRU175719AERR059985
SMRU175845ERR059986
SMRU175915BERR059987
SMRU176014ERR059988
SMRU17616CERR059989
SMRU176223FERR059990
SMRU176314ERR059991
SMRU17646BERR059992
SMRU176519FERR059993
SMRU176635CERR059994
SMRU176719AERR059995
SMRU176819FERR059996
SMRU176913ERR059997
SMRU177038ERR059998
SMRU177117FERR059999
SMRU177219FERR060000
SMRU17733ERR060001
SMRU177419FERR060002
SMRU177523FERR060003
SMRU17766BERR060004
SMRU177719FERR063786
SMRU1778NTERR063787
SMRU177919FERR063788
SMRU17806AERR063789
SMRU17816BERR063790
SMRU178215BERR063791
SMRU178323FERR063792
SMRU178419FERR063793
SMRU17854ERR063794
SMRU178619FERR063795
SMRU17876BERR063796
SMRU178821ERR063797
SMRU178915CERR063798
SMRU179014ERR063799
SMRU179123FERR063800
SMRU179219FERR063801
SMRU179319FERR063802
SMRU179433BERR063803
SMRU17957FERR063804
SMRU1796NTERR063805
SMRU179723FERR063806
SMRU179815BERR063807
SMRU179928FERR063808
SMRU1800NTERR063809
SMRU180119FERR060005
SMRU180219FERR060006
SMRU180320ERR060007
SMRU180423FERR060008
SMRU1805NTERR060009
SMRU18066BERR060010
SMRU180719FERR060011
SMRU180823FERR060012
SMRU180919FERR060013
SMRU181019FERR060014
SMRU18116BERR060015
SMRU181233BERR060016
SMRU1813NTERR060017
SMRU18143ERR060018
SMRU181514ERR060019
SMRU181619FERR060020
SMRU18174ERR060021
SMRU181834ERR060022
SMRU1819NTERR060023
SMRU1820NTERR060024
SMRU1821NTERR060025
SMRU182215BERR060026
SMRU182333CERR060027
SMRU182419FERR060028
SMRU182515CERR089616
SMRU182614ERR089617
SMRU182715CERR089618
SMRU1828NTERR089619
SMRU182923FERR089620
SMRU183023FERR089621
SMRU1831NTERR089622
SMRU183223FERR089623
SMRU183314ERR089624
SMRU183414ERR089625
SMRU183523FERR089626
SMRU183623FERR089627
SMRU183719FERR089628
SMRU183819AERR089629
SMRU183919FERR089630
SMRU184028FERR089631
SMRU1841NTERR089632
SMRU18426CERR089633
SMRU184320ERR089634
SMRU184423FERR089635
SMRU184513ERR089636
SMRU184619FERR089637
SMRU1847NTERR089638
SMRU1848NTERR089639
SMRU184919FERR057830
SMRU185015BERR057831
SMRU18516BERR057832
SMRU1852NTERR057833
SMRU185319FERR057834
SMRU1854NTERR057835
SMRU1855NTERR057836
SMRU1856NTERR057837
SMRU18576BERR057838
SMRU185819AERR057839
SMRU185913ERR057840
SMRU186013ERR057841
SMRU186123FERR057842
SMRU18626CERR057843
SMRU186319FERR057844
SMRU186423FERR057845
SMRU186519FERR057846
SMRU186619FERR057847
SMRU186715BERR057848
SMRU186823FERR057849
SMRU186935CERR057850
SMRU187018AERR057851
SMRU187113ERR057852
SMRU187219AERR057853
SMRU187319FERR057854
SMRU187419FERR057855
SMRU187519AERR057856
SMRU187623FERR057857
SMRU187723FERR057858
SMRU187835CERR057859
SMRU187934ERR057860
SMRU18806BERR057861
SMRU188114ERR057862
SMRU188219FERR057863
SMRU18836BERR057864
SMRU18846BERR057865
SMRU188519BERR057866
SMRU188615AERR057867
SMRU188721ERR057868
SMRU18886AERR057869
SMRU188934ERR057870
SMRU189019FERR057871
SMRU189119FERR057872
SMRU1892NTERR057873
SMRU189334ERR057874
SMRU189410BERR057875
SMRU189519FERR057876
SMRU189611AERR057877
SMRU18976CERR057878
SMRU18986AERR057879
SMRU189919FERR057880
SMRU190010BERR057881
SMRU1901NTERR057882
SMRU190223FERR057883
SMRU190314ERR057884
SMRU190411AERR057885
SMRU190511AERR057886
SMRU190623FERR057887
SMRU190719FERR057888
SMRU190819FERR057889
SMRU190919AERR057890
SMRU191019FERR057891
SMRU19116CERR057892
SMRU191219FERR057893
SMRU1913NTERR057894
SMRU191419FERR057895
SMRU191514ERR057896
SMRU191613ERR057897
SMRU19176BERR057898
SMRU191819FERR057899
SMRU1919NTERR057900
SMRU19206AERR057901
SMRU19216AERR057902
SMRU192219FERR057903
SMRU192313ERR057904
SMRU19246BERR057905
SMRU1925NTERR057906
SMRU192623FERR057907
SMRU192714ERR057908
SMRU19286AERR057909
SMRU19296AERR057910
SMRU1930NTERR057911
SMRU193115AERR057912
SMRU193219FERR057913
SMRU193323FERR057914
SMRU193423FERR057915
SMRU19356BERR057916
SMRU1936NTERR057917
SMRU1937NTERR057918
SMRU193834ERR057919
SMRU19396BERR057920
SMRU1940NTERR057921
SMRU194114ERR057922
SMRU194219AERR057923
SMRU194310FERR057924
SMRU194423FERR057925
SMRU194515CERR057926
SMRU19466AERR057927
SMRU194715AERR057928
SMRU194819FERR057929
SMRU194923FERR057930
SMRU195019FERR057931
SMRU1951NTERR057932
SMRU195223FERR057933
SMRU1953NTERR057934
SMRU195419FERR057935
SMRU195533BERR057936
SMRU19566BERR057937
SMRU195715CERR057938
SMRU195814ERR057939
SMRU195923FERR057940
SMRU196032FERR057941
SMRU19616CERR057942
SMRU196211AERR057943
SMRU196335FERR057944
SMRU19646AERR057945
SMRU196519FERR057946
SMRU196614ERR057947
SMRU19679LERR057948
SMRU196819FERR057949
SMRU1969NTERR057950
SMRU197015AERR057951
SMRU197119FERR057952
SMRU197233BERR057953
SMRU19736BERR057954
SMRU19746BERR057955
SMRU19756AERR057956
SMRU197614ERR057957
SMRU197723FERR057958
SMRU1978NTERR057959
SMRU19796CERR057960
SMRU198019FERR057961
SMRU198128FERR057962
SMRU198223FERR057963
SMRU19836CERR057964
SMRU19846BERR057965
SMRU198513ERR057966
SMRU198634ERR057967
SMRU198740ERR057968
SMRU198815BERR057969
SMRU198922AERR057970
SMRU19906CERR057971
SMRU199115AERR057972
SMRU199219FERR057973
SMRU19936BERR057974
SMRU199423FERR057975
SMRU199528FERR057976
SMRU199631ERR057977
SMRU1997NTERR057978
SMRU199815CERR057979
SMRU199915BERR057980
SMRU200019FERR057981
SMRU200119AERR057982
SMRU200219FERR057983
SMRU20036BERR057984
SMRU200419FERR057985
SMRU200514ERR057986
SMRU2006NTERR057987
SMRU200719AERR057988
SMRU2008NTERR057989
SMRU200923FERR057990
SMRU201034ERR057991
SMRU201119FERR057992
SMRU201219FERR057993
SMRU201323FERR057994
SMRU2014NTERR057995
SMRU201535FERR057996
SMRU2016NTERR057997
SMRU201719FERR063810
SMRU20186CERR063811
SMRU201934ERR063812
SMRU20206AERR063813
SMRU20216CERR063814
SMRU202210BERR063815
SMRU2023NTERR063816
SMRU202434ERR063817
SMRU202523FERR063818
SMRU20266BERR063819
SMRU20276BERR063820
SMRU20286AERR063821
SMRU2029NTERR063822
SMRU20306BERR063823
SMRU20316BERR063824
SMRU2032NTERR063825
SMRU20336CERR063826
SMRU203410BERR063827
SMRU20356BERR063828
SMRU2036NTERR063829
SMRU203723FERR063830
SMRU20383ERR063831
SMRU203936ERR063832
SMRU2040NTERR063833
SMRU204114ERR063834
SMRU204215BERR063835
SMRU20436BERR063836
SMRU204423FERR063837
SMRU20456BERR063838
SMRU204610FERR063839
SMRU204719FERR063840
SMRU204819FERR063841
SMRU20496BERR063842
SMRU205014ERR063843
SMRU205110AERR063844
SMRU205219FERR063845
SMRU20536AERR063846
SMRU205410AERR063847
SMRU205519FERR063848
SMRU20566BERR063849
SMRU205719FERR063850
SMRU2058NTERR063851
SMRU2059NTERR063852
SMRU206015CERR063853
SMRU2061NTERR063854
SMRU206210FERR063855
SMRU206319AERR063856
SMRU206419FERR063857
SMRU20659VERR063858
SMRU206635FERR063859
SMRU206723FERR063860
SMRU206814ERR063861
SMRU206914ERR063862
SMRU207015AERR063863
SMRU207123FERR063864
SMRU20726AERR063865
SMRU2073NTERR063866
SMRU20746BERR063867
SMRU207523FERR063868
SMRU207623FERR063869
SMRU207716FERR063870
SMRU207819FERR063871
SMRU207923FERR063872
SMRU208014ERR063873
SMRU208115BERR063874
SMRU208223FERR063875
SMRU20836BERR063876
SMRU20846CERR063877
SMRU208519FERR063878
SMRU208615AERR063879
SMRU208715AERR063880
SMRU20886BERR063881
SMRU208916FERR063882
SMRU20906CERR063883
SMRU209119FERR063884
SMRU209219FERR063885
SMRU2093NTERR063886
SMRU209433BERR063887
SMRU2095NTERR063888
SMRU2096NTERR063889
SMRU20976BERR063890
SMRU2098NTERR063891
SMRU209919BERR063892
SMRU210019AERR063893
SMRU210115BERR063894
SMRU210219FERR063895
SMRU210319FERR063896
SMRU21046BERR063897
SMRU210519FERR063898
SMRU21066BERR063899
SMRU210719FERR063900
SMRU210819FERR063901
SMRU210919FERR063902
SMRU211023FERR063903
SMRU211135CERR063904
SMRU2112NTERR063905
SMRU2113NTERR063906
SMRU2114NTERR063907
SMRU21154ERR063908
SMRU211619FERR063909
SMRU211715AERR063910
SMRU211819FERR063911
SMRU211915AERR063912
SMRU212019FERR063913
SMRU212119FERR063914
SMRU212210AERR063915
SMRU212319FERR063916
SMRU2124NTERR063917
SMRU212520ERR063918
SMRU212623FERR063919
SMRU21276BERR063920
SMRU212815AERR063921
SMRU212915CERR063922
SMRU213014ERR063923
SMRU213118CERR063924
SMRU213215CERR063925
SMRU213319FERR063926
SMRU213423FERR063927
SMRU213519FERR063928
SMRU213614ERR063929
SMRU213718CERR063930
SMRU213834ERR063931
SMRU21396AERR063932
SMRU214018CERR063933
SMRU2141NTERR063934
SMRU214219FERR063935
SMRU214323FERR063936
SMRU214423FERR063937
SMRU2145NTERR063938
SMRU214634ERR063939
SMRU21476CERR063940
SMRU214823FERR063941
SMRU214923FERR063942
SMRU215015CERR063943
SMRU215111AERR063944
SMRU215219FERR063945
SMRU2153NTERR063946
SMRU215419FERR063947
SMRU21559VERR063948
SMRU215619FERR063949
SMRU215740ERR063950
SMRU21586AERR063951
SMRU215923FERR063952
SMRU216015AERR063953
SMRU216119FERR063954
SMRU2162NTERR063955
SMRU2163NTERR063956
SMRU216423FERR063957
SMRU216523FERR063958
SMRU216619BERR063959
SMRU216719FERR063960
SMRU21686BERR063961
SMRU216932AERR063962
SMRU217014ERR063963
SMRU2171NTERR063964
SMRU21727BERR063965
SMRU217319FERR063966
SMRU21746AERR063967
SMRU217529ERR063968
SMRU217610FERR063969
SMRU217713ERR063970
SMRU21786BERR063971
SMRU217919FERR063972
SMRU218023FERR063973
SMRU218115CERR063974
SMRU218237ERR063975
SMRU218319FERR063976
SMRU21846AERR063977
SMRU218516FERR063978
SMRU21866AERR063979
SMRU21876BERR063980
SMRU218810AERR063981
SMRU218923FERR063982
SMRU219019AERR063983
SMRU2191NTERR063984
SMRU2192NTERR063985
SMRU2193NTERR063986
SMRU219419AERR063987
SMRU219534ERR063988
SMRU219619FERR063989
SMRU219719FERR063990
SMRU219819AERR063991
SMRU2199NTERR063992
SMRU22006BERR063993
SMRU220132FERR063994
SMRU220223AERR063995
SMRU22036CERR063996
SMRU220415CERR063997
SMRU220513ERR063998
SMRU220617FERR063999
SMRU220734ERR064000
SMRU2208NTERR064001
SMRU220923FERR066200
SMRU221023FERR066201
SMRU221120ERR066202
SMRU221233DERR066203
SMRU221335FERR066204
SMRU221419FERR066205
SMRU22156BERR066206
SMRU22166CERR066207
SMRU221714ERR066208
SMRU221819FERR066209
SMRU2219NTERR066210
SMRU222031ERR066211
SMRU2221NTERR066212
SMRU222219FERR066213
SMRU222335CERR066214
SMRU222419FERR066215
SMRU22256AERR066216
SMRU222611AERR066217
SMRU2227NTERR066218
SMRU222834ERR066219
SMRU222919FERR066220
SMRU2230NTERR066221
SMRU223119BERR066222
SMRU223218CERR066223
SMRU22334ERR084251
SMRU2234NTERR084252
SMRU22356AERR084253
SMRU223623FERR084254
SMRU223723FERR084255
SMRU223823FERR084256
SMRU2239NTERR084257
SMRU224023FERR084258
SMRU22416AERR084259
SMRU2242NTERR084260
SMRU22436AERR084261
SMRU224419AERR084262
SMRU224523AERR084263
SMRU224611AERR084264
SMRU224719FERR084265
SMRU2248NTERR084266
SMRU224910AERR084267
SMRU225019FERR084268
SMRU225123AERR084269
SMRU22526BERR084270
SMRU22536AERR084271
SMRU225419AERR084272
SMRU225514ERR084273
SMRU225623FERR084274
SMRU225723FERR066224
SMRU225815AERR066225
SMRU22599NERR066226
SMRU226013ERR066227
SMRU22616AERR066228
SMRU226240ERR066229
SMRU22636AERR066230
SMRU226419BERR066231
SMRU226518CERR066232
SMRU226615CERR066233
SMRU226731ERR066234
SMRU226822FERR066235
SMRU22696AERR066236
SMRU22706AERR066237
SMRU227119FERR066238
SMRU2272NTERR066239
SMRU227319FERR066240
SMRU2274NTERR066241
SMRU227513ERR066242
SMRU227634ERR066243
SMRU227719FERR066244
SMRU2278NTERR066245
SMRU2279NTERR066246
SMRU22806BERR066247
SMRU22816AERR066248
SMRU228237ERR066249
SMRU2283NTERR066250
SMRU228423FERR066251
SMRU228519FERR066252
SMRU228616FERR066253
SMRU22876AERR066254
SMRU228848ERR066255
SMRU228914ERR066256
SMRU229019FERR066257
SMRU229119FERR066258
SMRU2292NTERR066259
SMRU22936AERR066260
SMRU22946BERR066261
SMRU229515BERR066262
SMRU229632FERR066263
SMRU229719AERR066264
SMRU229835CERR066265
SMRU229917FERR066266
SMRU230015BERR066267
SMRU230115BERR066268
SMRU23024ERR066269
SMRU2303NTERR066270
SMRU230423AERR066271

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU230519FERR066272
SMRU230619AERR066273
SMRU23076CERR066274
SMRU2308NTERR066275
SMRU230923FERR066276
SMRU23106CERR066277
SMRU231111AERR066278
SMRU231215BERR066279
SMRU231323AERR066280
SMRU23146CERR066281
SMRU231523FERR066282
SMRU2316NTERR066283
SMRU231719FERR066284
SMRU231819FERR066285
SMRU231919FERR066286
SMRU2320NTERR066287
SMRU232119FERR066288
SMRU2322NTERR066289
SMRU232335CERR066290
SMRU2324NTERR066291
SMRU232534ERR066292
SMRU2326NTERR066293
SMRU232723FERR066294
SMRU232834ERR066295
SMRU232934ERR066296
SMRU233023FERR066297
SMRU23316BERR066298
SMRU23326BERR066299
SMRU233311AERR066300
SMRU233437ERR066301
SMRU233511AERR066302
SMRU2336NTERR066303
SMRU2337NTERR066304
SMRU233819FERR066305
SMRU233919AERR066306
SMRU2340NTERR066307
SMRU23416AERR066308
SMRU234223FERR066309
SMRU23437BERR066310
SMRU234434ERR066311
SMRU23456BERR066312
SMRU23466BERR066313
SMRU23476AERR066314
SMRU234813ERR066315
SMRU23496CERR066316
SMRU235023FERR066317
SMRU235123FERR066318
SMRU235210BERR066319
SMRU23536BERR066320
SMRU235419FERR066321
SMRU235533DERR066322
SMRU23566BERR066323
SMRU235718CERR066324
SMRU235838ERR066325
SMRU235920ERR066326
SMRU23606BERR066327
SMRU23616AERR066328
SMRU236219AERR066329
SMRU236314ERR066330
SMRU236423FERR066331
SMRU236516FERR066332
SMRU236611AERR066333
SMRU23676AERR066334
SMRU236822FERR066335
SMRU236940ERR066336
SMRU237019FERR066337
SMRU2371NTERR066338
SMRU237219FERR066339
SMRU237313ERR066340
SMRU23746CERR066341
SMRU237519FERR066342
SMRU237613ERR066343
SMRU237718CERR066344
SMRU237823FERR066345
SMRU23796CERR066346
SMRU23806AERR066347
SMRU238119FERR066348
SMRU238219AERR066349
SMRU23839NERR066350
SMRU238419FERR066351
SMRU238514ERR066352
SMRU238623FERR066353
SMRU238723BERR066354
SMRU23885ERR066355
SMRU23896CERR066356
SMRU239023FERR066357
SMRU239138ERR066358
SMRU239235CERR066359
SMRU2393NTERR066360
SMRU239414ERR066361
SMRU2395NTERR066362
SMRU2396NTERR066363
SMRU239715CERR066364
SMRU23986AERR066365
SMRU23996AERR066366
SMRU240015BERR066367
SMRU2401NTERR064139
SMRU240219FERR064140
SMRU240315BERR064141
SMRU240419AERR064142
SMRU24056BERR064143
SMRU240611AERR064144
SMRU24076CERR064145
SMRU240810BERR064146
SMRU24096AERR064147
SMRU241021ERR064148
SMRU241123AERR064149
SMRU241219AERR064150
SMRU241319AERR064151
SMRU24146AERR064152
SMRU24156AERR064153
SMRU24166AERR064154
SMRU241719FERR064155
SMRU24189VERR064156
SMRU241910BERR064157
SMRU242011AERR064158
SMRU24213ERR064159
SMRU242219FERR064160
SMRU242313ERR064161
SMRU2424NTERR064162
SMRU242515AERR064163
SMRU24266BERR064164
SMRU2427NTERR064165
SMRU242819FERR064166
SMRU2429NTERR064167
SMRU24306BERR064168
SMRU243123FERR064169
SMRU243215CERR064170
SMRU24336BERR064171
SMRU243423FERR064172
SMRU243516FERR064173
SMRU2436NTERR064174
SMRU243719FERR064175
SMRU24386BERR064176
SMRU243919FERR064177
SMRU244019FERR064178
SMRU24416BERR064179
SMRU244219FERR064180
SMRU24436AERR064181
SMRU244419AERR064182
SMRU244534ERR064183
SMRU24466AERR064184
SMRU2447NTERR064185
SMRU244823FERR064186
SMRU244923AERR064187
SMRU24506AERR064188
SMRU245115AERR064189
SMRU245214ERR064190
SMRU245323FERR064191
SMRU245434ERR064192
SMRU245535CERR064193
SMRU245635CERR064194
SMRU245715BERR064195
SMRU245810BERR064196
SMRU245919FERR064197
SMRU246023FERR064198
SMRU246113ERR064199
SMRU246223FERR064200
SMRU246318FERR064201
SMRU2464NTERR064202
SMRU246519AERR064203
SMRU246619FERR064204
SMRU246721ERR064205
SMRU246819FERR064206
SMRU246923FERR064207
SMRU247023FERR064208
SMRU247119AERR064209
SMRU247218CERR064210
SMRU247314ERR064211
SMRU24746BERR064212
SMRU24756BERR064213
SMRU247615CERR064214
SMRU247723BERR064215
SMRU24786AERR064216
SMRU247921ERR064217
SMRU248028FERR064218
SMRU2481NTERR064219
SMRU24826BERR064220
SMRU2483NTERR064221
SMRU248415CERR064222
SMRU248515AERR064223
SMRU248634ERR064224
SMRU248715BERR064225
SMRU2488NTERR064226
SMRU24896BERR064227
SMRU249034ERR064228
SMRU249115CERR064229
SMRU249219AERR064230
SMRU249335CERR064231
SMRU249419FERR064232
SMRU249538ERR064233
SMRU249619FERR064234
SMRU24976BERR064002
SMRU2498NTERR064003
SMRU249915AERR064004
SMRU2500NTERR064005
SMRU250119FERR064006
SMRU25026AERR064007
SMRU25035ERR064008
SMRU250423FERR064009
SMRU250519FERR064010
SMRU25066AERR064011
SMRU250719FERR064012
SMRU250815AERR064013
SMRU250915CERR064014
SMRU251019FERR064015
SMRU251123FERR064016
SMRU251214ERR064017
SMRU25136BERR064018
SMRU251419FERR064019
SMRU2515NTERR064020
SMRU25166AERR064021
SMRU251735FERR064022
SMRU251819AERR064023
SMRU251923FERR064024
SMRU25206BERR064025
SMRU25216CERR064026
SMRU252223FERR064027
SMRU252314ERR064028
SMRU2524NTERR064029
SMRU25256CERR064030
SMRU25267BERR064031
SMRU252714ERR064032
SMRU252810AERR064033
SMRU25299NERR064034
SMRU253023FERR064035
SMRU2531NTERR064036
SMRU253221ERR064037
SMRU253313ERR064038
SMRU253415BERR064039
SMRU253514ERR064040
SMRU2536NTERR064041
SMRU253710BERR064042
SMRU253823FERR064043
SMRU25396BERR064044
SMRU254019AERR064045
SMRU25416BERR064046
SMRU254223FERR064047
SMRU254310BERR064048
SMRU2544NTERR064049
SMRU254533CERR067768
SMRU254638ERR067769
SMRU254735FERR067770
SMRU2548NTERR067771
SMRU254910AERR067772
SMRU255014ERR067773
SMRU255115AERR067774
SMRU25526AERR067775
SMRU25536BERR067776
SMRU2554NTERR067777
SMRU255514ERR067778
SMRU255628FERR067779
SMRU255723FERR067780
SMRU255819FERR067781
SMRU2559NTERR067782
SMRU256019FERR067783
SMRU256114ERR067784
SMRU256221ERR067785
SMRU256334ERR067786
SMRU256419FERR067787
SMRU256523FERR067788
SMRU2566NTERR067789
SMRU25676BERR067790
SMRU2568NTERR067791
SMRU25696AERR067792
SMRU257015AERR067793
SMRU257115CERR067794
SMRU257215AERR067795
SMRU2573NTERR067796
SMRU257423FERR067797
SMRU257523FERR067798
SMRU2576NTERR067799
SMRU257715BERR067800
SMRU257819AERR067801
SMRU257934ERR067802
SMRU25806AERR067803
SMRU258119FERR067804
SMRU258223FERR067805
SMRU258338ERR067806
SMRU258419FERR067807
SMRU2585NTERR067808
SMRU258615AERR067809
SMRU258719FERR067810
SMRU25886BERR067811
SMRU258933BERR067812
SMRU25909VERR067813
SMRU259113ERR067814
SMRU25926CERR067815
SMRU25939VERR067816
SMRU259419FERR067817
SMRU25956AERR067818
SMRU25966AERR067819
SMRU2597NTERR067820
SMRU25989NERR067821
SMRU259923FERR067822
SMRU260011AERR067823
SMRU26019NERR067824
SMRU2602NTERR067825
SMRU26036AERR067826
SMRU260421ERR067827
SMRU260538ERR067828
SMRU26066BERR067829
SMRU260715BERR067830
SMRU260815BERR067831
SMRU260923BERR067832
SMRU261023FERR067833
SMRU261123FERR067834
SMRU261219FERR067835
SMRU261318AERR067836
SMRU26146AERR067837
SMRU261519FERR067838
SMRU26166BERR067839
SMRU261719FERR067840
SMRU26186AERR067841
SMRU26196CERR067842
SMRU262023FERR067843
SMRU26216CERR067844
SMRU262219FERR067845
SMRU26235ERR067846
SMRU262419FERR067847
SMRU26259NERR067848
SMRU262634ERR067849
SMRU26276CERR067850
SMRU26283ERR067851
SMRU262934ERR067852
SMRU2630NTERR067853
SMRU263119FERR067854
SMRU263215AERR067855
SMRU263310BERR067856
SMRU263415BERR067857
SMRU26357BERR067858
SMRU2636NTERR067859
SMRU263719FERR067860
SMRU26386BERR067861
SMRU2639NTERR067862
SMRU264023FERR067863
SMRU26416AERR066176
SMRU264234ERR066177
SMRU26436BERR066178
SMRU264413ERR066179
SMRU264519AERR066180
SMRU264610AERR066181
SMRU26476BERR066182
SMRU264835FERR066183
SMRU264915BERR066184
SMRU26509VERR066185
SMRU265115BERR066186
SMRU265214ERR066187
SMRU265310AERR066188
SMRU26546AERR066189
SMRU265514ERR066190
SMRU26566BERR066191
SMRU265714ERR066192
SMRU265821ERR066193
SMRU265938ERR066194
SMRU266023FERR066195
SMRU26616CERR066196
SMRU26626CERR066197
SMRU26636CERR066198
SMRU266421ERR066199
SMRU266514ERR064067
SMRU2666NTERR064068
SMRU266715AERR064069
SMRU26686BERR064070
SMRU26696BERR064071
SMRU267022FERR064072
SMRU267119FERR064073
SMRU267215BERR064074
SMRU26736BERR064075
SMRU26746BERR064076
SMRU26756BERR064077
SMRU267617FERR064078
SMRU267724FERR064079
SMRU267819FERR064080
SMRU267935CERR064081
SMRU268019FERR064082
SMRU2681NTERR064083
SMRU26823ERR064084
SMRU268338ERR064085
SMRU268415AERR064086
SMRU268534ERR064087
SMRU26866BERR064088
SMRU268738ERR064089
SMRU26886BERR064090
SMRU2689NTERR064091
SMRU2690NTERR064092
SMRU269119FERR064093
SMRU2692NTERR064094
SMRU2693NTERR064095
SMRU2694NTERR064096
SMRU269513ERR064097
SMRU2696NTERR064098
SMRU269723FERR064099
SMRU269823FERR064100
SMRU2699NTERR064101
SMRU270010BERR064102
SMRU270110BERR064103
SMRU2702NTERR064104
SMRU270323FERR064105
SMRU2704NTERR064106
SMRU27056BERR064107
SMRU270623FERR064108
SMRU270722FERR064109
SMRU27089NERR064110
SMRU2709NTERR064111
SMRU27107BERR064112
SMRU27117BERR064113
SMRU271219AERR064114
SMRU27139NERR064115
SMRU27146CERR064116
SMRU27159NERR064117
SMRU27167BERR064118
SMRU271715AERR064119
SMRU2718NTERR064120
SMRU27196AERR064121
SMRU2720NTERR064122
SMRU272115AERR064123
SMRU2722NTERR064124
SMRU27239NERR064125
SMRU272421ERR064126
SMRU2725NTERR064127
SMRU272614ERR064128
SMRU27276BERR064129
SMRU272813ERR064130
SMRU27297BERR064131
SMRU273015BERR064132
SMRU2731NTERR064133
SMRU273219FERR064134
SMRU273319FERR064135
SMRU273433FERR064136
SMRU27356BERR064137
SMRU27366BERR064138
SMRU2737NTERR069587
SMRU27389VERR069588
SMRU2739NTERR069589
SMRU274010AERR069590
SMRU27419NERR069591
SMRU274219FERR069592
SMRU274310AERR069593
SMRU2744NTERR069594
SMRU274523FERR069595
SMRU27466BERR069596
SMRU274715BERR069597
SMRU274823FERR069598
SMRU2749NTERR069599
SMRU275013ERR069600
SMRU275116FERR069601
SMRU275238ERR069602
SMRU275321ERR069603
SMRU275423FERR069604
SMRU27558ERR069605
SMRU27566AERR069606
SMRU275714ERR069607
SMRU275814ERR069608
SMRU2759NTERR069609
SMRU276019FERR069610
SMRU276119FERR069611
SMRU2762NTERR069612
SMRU276319FERR069613
SMRU276434ERR069614
SMRU276519FERR069615
SMRU276621ERR069616
SMRU276723FERR069617
SMRU27686CERR069618
SMRU276914ERR069619
SMRU27706BERR069620
SMRU27716BERR069621
SMRU27726BERR069622
SMRU2773NTERR069623
SMRU2774NTERR069624
SMRU27756BERR069625
SMRU277623FERR069626
SMRU277719FERR069627
SMRU277835CERR069628
SMRU27796BERR069629
SMRU27807BERR069630
SMRU278135CERR069631
SMRU278219FERR069632
SMRU278319FERR069633
SMRU278414ERR069634
SMRU2785NTERR069635
SMRU278638ERR069636
SMRU278723FERR069637
SMRU278834ERR069638
SMRU2789NTERR069639
SMRU279015BERR069640
SMRU2791NTERR069641
SMRU279215AERR069642
SMRU27936AERR069643
SMRU2794NTERR069644
SMRU279535CERR069645
SMRU279619FERR069646
SMRU27974ERR069647
SMRU27986BERR069648
SMRU279933BERR069649
SMRU28004ERR069650
SMRU280123FERR069651
SMRU2802NTERR069652
SMRU28038ERR069653
SMRU280414ERR069654
SMRU280514ERR069655
SMRU28066BERR069656
SMRU28076CERR069657
SMRU280819FERR069658
SMRU280919FERR069659
SMRU2810NTERR069660
SMRU28116AERR069661
SMRU281223FERR069662
SMRU281319BERR069663
SMRU2814NTERR069664
SMRU281519FERR069665
SMRU281634ERR069666
SMRU28176BERR069667
SMRU281819FERR069668
SMRU28196AERR069669
SMRU282023FERR069670
SMRU2821NTERR069671
SMRU282219FERR069672
SMRU28236BERR069673
SMRU2824NTERR069674
SMRU2825NTERR069675
SMRU282615BERR069676
SMRU28276BERR069677
SMRU282819FERR069678
SMRU28296BERR069679
SMRU283019FERR069680
SMRU283111AERR069681
SMRU28329NERR069682
SMRU28336BERR067888
SMRU283419AERR067889
SMRU283510AERR067890
SMRU28366CERR067891
SMRU28379VERR067892
SMRU2838NTERR067893
SMRU283923FERR067894
SMRU284014ERR067895
SMRU28416BERR067896
SMRU284215BERR067897
SMRU284323BERR067898
SMRU284423BERR067899
SMRU284519AERR067900
SMRU284614ERR067901
SMRU284719FERR067902
SMRU284814ERR067903
SMRU284914ERR067904
SMRU28506BERR067905
SMRU285115BERR067906
SMRU285223FERR067907
SMRU28536BERR067908
SMRU285415BERR067909
SMRU285522FERR067910
SMRU2856NTERR067911
SMRU285719FERR067864
SMRU285815BERR067865
SMRU285914ERR067866
SMRU286014ERR067867
SMRU286115BERR067868
SMRU286223FERR067869
SMRU286323FERR067870
SMRU286419AERR067871
SMRU286519AERR067872
SMRU286619AERR067873
SMRU286719FERR067874
SMRU28686AERR067875
SMRU28696BERR067876
SMRU287010AERR067877
SMRU2871NTERR067878
SMRU287215AERR067879
SMRU28736AERR067880
SMRU287419FERR067881
SMRU287528FERR067882
SMRU28766CERR067883
SMRU287719FERR067884
SMRU287835CERR067885
SMRU2879NTERR067886
SMRU28806CERR067887

Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population

Sample

Strain

Run Accession

SMRU2881NTERR067912
SMRU288219FERR067913
SMRU288319FERR067914
SMRU28846BERR067915
SMRU2885NTERR067916
SMRU288623FERR067917
SMRU288719FERR067918
SMRU288823FERR067919
SMRU288919FERR067920
SMRU28906AERR067921
SMRU2891NTERR067922
SMRU289215BERR067923
SMRU289323FERR067924
SMRU28946AERR067925
SMRU28959VERR067926
SMRU28969VERR067927
SMRU289715AERR067928
SMRU289819FERR067929
SMRU2899NTERR067930
SMRU29006BERR067931
SMRU290119FERR067932
SMRU29026BERR067933
SMRU290319FERR067934
SMRU29049NERR067935
SMRU29056BERR067936
SMRU290610AERR067937
SMRU290715BERR067938
SMRU2908NTERR067939
SMRU290933FERR067940
SMRU29106BERR067941
SMRU291134ERR067942
SMRU291234ERR067943
SMRU291319FERR067944
SMRU291410AERR067945
SMRU29156AERR067946
SMRU291614ERR067947
SMRU29176CERR067948
SMRU291814ERR067949
SMRU29196AERR067950
SMRU292023BERR067951
SMRU292123FERR067952
SMRU2922NTERR067953
SMRU292334ERR067954
SMRU29246BERR067955
SMRU292519AERR067956
SMRU292633BERR067957
SMRU292710AERR067958
SMRU292823FERR067959
SMRU292935CERR084155
SMRU293019AERR084156
SMRU2931NTERR084157
SMRU293219FERR084158
SMRU29336CERR084159
SMRU29346AERR084160
SMRU293519FERR084161
SMRU2936NTERR084162
SMRU293710BERR084163
SMRU293828FERR084164
SMRU2939NTERR084165
SMRU29406BERR084166
SMRU2941NTERR084167
SMRU29426BERR084168
SMRU2943NTERR084169
SMRU2944NTERR084170
SMRU294511AERR084171
SMRU29466BERR084172
SMRU2947NTERR084173
SMRU294819FERR084174
SMRU2949NTERR084175
SMRU29506BERR084176
SMRU29516BERR084177
SMRU295217FERR084178
SMRU295323FERR084179
SMRU295419FERR084180
SMRU295534ERR084181
SMRU29566AERR084182
SMRU295734ERR084183
SMRU295810AERR084184
SMRU29594ERR084185
SMRU29606AERR084186
SMRU2961NTERR084187
SMRU296210AERR084188
SMRU29635ERR084189
SMRU29646BERR084190
SMRU296519FERR084191
SMRU29666AERR084192
SMRU296723AERR084193
SMRU296811AERR084194
SMRU296910FERR084195
SMRU297010FERR084196
SMRU297115CERR084197
SMRU29726CERR084198
SMRU2973NTERR084199
SMRU297423FERR084200
SMRU297519FERR084201
SMRU297614ERR084202
SMRU297719FERR084203
SMRU29786AERR084204
SMRU297934ERR084205
SMRU298014ERR084206
SMRU2981NTERR084207
SMRU298210AERR084208
SMRU298310AERR084209
SMRU29846AERR084210
SMRU298519AERR084211
SMRU298614ERR084212
SMRU29876AERR084213
SMRU2988NTERR084214
SMRU298914ERR084215
SMRU29906BERR084216
SMRU2991NTERR084217
SMRU299213ERR084218
SMRU29936BERR084219
SMRU299414ERR084220
SMRU299519AERR084221
SMRU299621ERR084222
SMRU299734ERR084223
SMRU2998NTERR084224
SMRU299935CERR084225
SMRU300014ERR084226
SMRU300111AERR084227
SMRU300210AERR084228
SMRU300315AERR084229
SMRU30046BERR084230
SMRU300515CERR084231
SMRU30066BERR084232
SMRU300734ERR084233
SMRU300834ERR084234
SMRU300915AERR084235
SMRU30106BERR084236
SMRU30118ERR084237
SMRU301225AERR084238
SMRU3013NTERR084239
SMRU301434ERR084240
SMRU301534ERR084241
SMRU30166AERR084242
SMRU301716FERR084243
SMRU3018NTERR084244
SMRU301913ERR084245
SMRU302022FERR084246
SMRU302140ERR084247
SMRU30226CERR084248
SMRU302314ERR084249
SMRU30246BERR084250
SMRU302519FERR072174
SMRU302619FERR072175
SMRU302714ERR072176
SMRU302814ERR072177
SMRU302923FERR072178
SMRU303019FERR072179
SMRU303114ERR072180
SMRU3032NTERR072181
SMRU3033NTERR072182
SMRU303414ERR072183
SMRU30356AERR072184
SMRU30366CERR072185
SMRU30376CERR072186
SMRU303815CERR072187
SMRU30396AERR072188
SMRU30406AERR072189
SMRU304119FERR072190
SMRU304219FERR072191
SMRU304314ERR072192
SMRU30446CERR072193
SMRU304534ERR072194
SMRU304610AERR072195
SMRU30476BERR072196
SMRU304819FERR072197
SMRU3049NTERR072198
SMRU305019BERR072199
SMRU305110AERR072200
SMRU30528ERR072201
SMRU305323AERR072202
SMRU305419FERR072203
SMRU305511AERR072204
SMRU3056NTERR072205
SMRU30576BERR072206
SMRU305834ERR072207
SMRU305910AERR072208
SMRU3060NTERR072209
SMRU306115CERR072210
SMRU306223FERR072211
SMRU306319FERR072212
SMRU3064NTERR072213
SMRU306523FERR072214
SMRU306619FERR072215
SMRU306715AERR072216
SMRU30686BERR072217
SMRU306923FERR072218
SMRU307010AERR072219
SMRU3071NTERR072220
SMRU30726BERR072221
SMRU307315AERR072222
SMRU3074NTERR072223
SMRU30751ERR072224
SMRU307623FERR072225
SMRU307714ERR072226
SMRU307814ERR072227
SMRU307914ERR072228
SMRU30806AERR072229
SMRU308119FERR072230
SMRU308217FERR072231
SMRU308316FERR072232
SMRU308415BERR072233
SMRU308519FERR072234
SMRU308615AERR072235
SMRU308723FERR072236
SMRU308819AERR072237
SMRU308914ERR072238
SMRU309014ERR072239
SMRU30916BERR072240
SMRU30924ERR072241
SMRU30936AERR072242
SMRU309419AERR072243
SMRU309535FERR072244
SMRU309619BERR072245
SMRU309746ERR084299
SMRU309811AERR084300
SMRU309919BERR084301
SMRU310019BERR084302
SMRU310115BERR084303
SMRU310233BERR084304
SMRU310319FERR084305
SMRU310419AERR084306
SMRU310511AERR084307
SMRU310619FERR084308
SMRU31076AERR084309
SMRU3108NTERR084310
SMRU310934ERR084311
SMRU311014ERR084312
SMRU311119FERR084313
SMRU3112NTERR084314
SMRU3113NTERR084315
SMRU311413ERR084316
SMRU311513ERR084317
SMRU311619FERR084318
SMRU311714ERR084319
SMRU311819FERR084320
SMRU311914ERR084321
SMRU312019FERR084322
SMRU312114ERR084275
SMRU312219FERR084276
SMRU312314ERR084277
SMRU31246BERR084278
SMRU312519FERR084279
SMRU312614ERR084280
SMRU312723FERR084281
SMRU312823FERR084282
SMRU31296AERR084283
SMRU3130NTERR084284
SMRU31316BERR084285
SMRU313214ERR084286
SMRU31336AERR084287
SMRU313415CERR084288
SMRU313513ERR084289
SMRU31366BERR084290
SMRU313723BERR084291
SMRU3138NTERR084292
SMRU313919FERR084293
SMRU31406BERR084294
SMRU314124FERR084295
SMRU31426BERR084296
SMRU31436BERR084297
SMRU314421ERR084298
SMRU3145NTERR064050
SMRU314619AERR064051
SMRU314719FERR064052
SMRU314823FERR064053
SMRU3149NTERR064054
SMRU315014ERR064055
SMRU31516AERR064056
SMRU315214ERR064057
SMRU3153NTERR064058
SMRU31546AERR064059
SMRU315514ERR064060
SMRU31566AERR064061
SMRU315715BERR064062
SMRU315814ERR064063
SMRU315914ERR064064
SMRU316014ERR064065
SMRU31616BERR064066
1718STDY55128546BERR316179
1718STDY551285323FERR316178
1718STDY551285219BERR316177
1718STDY55128516CERR316176
1718STDY551285023FERR316175
1718STDY55128496BERR316174
1718STDY551284817FERR316173
1718STDY551284719AERR316172
1718STDY5512846NTERR316171
1718STDY551284514ERR316170
1718STDY55128445ERR316169
1718STDY551284313ERR316168
1718STDY551284223FERR316167
1718STDY5512841NTERR316166
1718STDY5512840NTERR316165
1718STDY551283910BERR316164
1718STDY551283840ERR316163
1718STDY551283715BERR316162
1718STDY55128366AERR316161
1718STDY55128356BERR316160
1718STDY551283423FERR316159
1718STDY5512833NTERR316158
1718STDY551283223FERR316157
1718STDY551283123FERR316156
1718STDY55128306BERR316155
1718STDY551282923FERR316154
1718STDY551282819AERR316153
1718STDY55128276AERR316152
1718STDY55128266BERR316151
1718STDY551282519CERR316150
1718STDY551282423FERR316149
1718STDY5512823NTERR316148
1718STDY551282223FERR316147
1718STDY55128216AERR316146
1718STDY551282019FERR316145
1718STDY551281923FERR316144
1718STDY551281823FERR316143
1718STDY551281718CERR316142
1718STDY551281619FERR316141
1718STDY551281519FERR316140
1718STDY551281417FERR316139
1718STDY55128136BERR316138
1718STDY5512812NTERR316137
1718STDY551281138ERR316136
1718STDY55128106AERR316135
1718STDY551280919FERR316134
1718STDY551280819FERR316133
1718STDY55128076BERR316132
1718STDY551280619FERR316131
1718STDY551280519FERR316130
1718STDY551280423FERR316129
1718STDY55128036BERR316128
1718STDY551280232FERR316127
1718STDY551280123FERR316126
1718STDY5512800NTERR316125
1718STDY551279923FERR316124
1718STDY551279829ERR316123
1718STDY551279714ERR316122
1718STDY551279619FERR316121
1718STDY551279523FERR316120
1718STDY55127946AERR316119
1718STDY551279310BERR316118
1718STDY551279223FERR316117
1718STDY551279123FERR316116
1718STDY551279023FERR316115
1718STDY55127896BERR316114
1718STDY551278819FERR316113
1718STDY551278719FERR316112
1718STDY55127869NERR316111
1718STDY551278419FERR316110
1718STDY55127836BERR316109
1718STDY55127826BERR316108
1718STDY551278114ERR316107
1718STDY551278019AERR316106
1718STDY5512779NTERR316105
1718STDY551277823FERR316104
1718STDY55127779NERR316103
1718STDY551277619FERR316102
1718STDY5512775NTERR316101
1718STDY551277423FERR316100
1718STDY551277319FERR316099
1718STDY55127726BERR316098
1718STDY551277123FERR316097
1718STDY55127706BERR316096
1718STDY5512769NTERR316095
1718STDY551276814ERR316094
1718STDY551276719FERR316093
1718STDY551276619FERR316092
1718STDY551276514ERR316091
1718STDY551276410FERR316090
1718STDY551276337ERR316089
1718STDY5512762NTERR316088
1718STDY551276119FERR316087
1718STDY55127606BERR316086
1718STDY5512759NTERR316085
1718STDY551275814ERR316084
1718STDY551275738ERR316083
1718STDY551275619FERR316082
1718STDY5512755NTERR316081
1718STDY551275415CERR316080
1718STDY55127539NERR316079
1718STDY5512752NTERR316078
1718STDY551275123FERR316077
1718STDY5512750NTERR316076
1718STDY5512749NTERR316075
1718STDY55127486BERR316074
1718STDY551274723FERR316073
1718STDY551274623FERR316072
1718STDY551274519BERR316071
1718STDY55127446AERR316070
1718STDY5512743NTERR316069
1718STDY551274219FERR316068
1718STDY551274134ERR316067
1718STDY551274032FERR316066
1718STDY551273910FERR316065
1718STDY551273823FERR316064
1718STDY5512737NTERR316063
1718STDY551273619FERR316062
1718STDY55127356CERR316061
1718STDY551273414ERR316060
1718STDY551273334ERR316059
1718STDY55127326CERR316058
1718STDY5512731NTERR316057
1718STDY551273019AERR316056
1718STDY55127296BERR316055
1718STDY5512728NTERR316054
1718STDY5512727NTERR316053
1718STDY5512726NTERR316052
1718STDY551272535FERR316051
1718STDY55127246CERR316050
1718STDY551272319FERR316049
1718STDY55127228ERR316048
1718STDY55127216CERR316047
1718STDY551272034ERR316046
1718STDY55127196BERR316045
1718STDY551271815CERR316044
1718STDY551271723FERR316043
1718STDY551271632FERR316042
1718STDY551271534ERR316041
1718STDY551271419FERR316040
1718STDY55127136AERR316039
1718STDY551271234ERR316038
1718STDY551271111AERR316037
1718STDY551271032FERR316036
1718STDY551270919FERR316035
1718STDY551270823FERR316034
1718STDY551270719FERR316033
1718STDY551270634ERR316032
1718STDY551270532FERR316031
1718STDY551270423AERR316030
1718STDY551270323FERR316029
1718STDY55127026AERR316028
1718STDY551270134ERR316027
1718STDY551270045ERR316026
1718STDY551269923AERR316025
1718STDY551269823AERR316024
1718STDY551269714ERR316023
1718STDY551269623AERR316022
1718STDY551269535FERR316021
1718STDY551269435FERR316020
1718STDY551269335FERR316019
1718STDY551269223FERR316018
1718STDY551269135FERR316017
1718STDY551269046ERR316016

Whole genome sequencing of carried Streptococcus pneumoniae during the implementation of pneumococcal conjugate vaccines in the UK

Sample

Strain

Run Accession

UoS0008ST177ERR044858
UoS0011ST449ERR044859
UoS0014ST162ERR044860
UoS0015ST176ERR044861
UoS0021ST3411ERR044862
UoS0023ST444ERR044863
UoS0026ST392ERR044864
UoS0038ST2496ERR044865
UoS0041ST2457ERR044866
UoS0048ST1497ERR044867
UoS0049ST162ERR044868
UoS0050ST3240ERR044869
UoS0058ST199ERR044870
UoS0061ST392ERR044871
UoS0064ST36ERR044872
UoS0068ST65ERR044873
UoS0071ST469ERR044874
UoS0075ST65ERR044875
UoS0080ST405ERR044876
UoS0081ST1692ERR044877
UoS0082ST176ERR044878
UoS0093ST176ERR044879
UoS0094ST310ERR044880
UoS0095ST15ERR044881
UoS0103ST180ERR044882
UoS0110ST311ERR044883
UoS0113ST65ERR044884
UoS0135ST33ERR044885
UoS0136ST138ERR044886
UoS0138ST138ERR044887
UoS0140ST176ERR044888
UoS0141ST311ERR044889
UoS0145ST4018ERR044890
UoS0152ST176ERR044891
UoS0154ST65ERR044892
UoS0155ST199ERR044893
UoS0156ST446ERR044894
UoS0159ST402ERR044895
UoS0160ST62ERR044896
UoS0163ST205ERR044897
UoS0165ST177ERR044898
UoS0172ST138ERR044899
UoS0173ST9ERR044900
UoS0174ST698ERR044901
UoS0175ST309ERR044902
UoS0176ST162ERR044903
UoS0194ST65ERR044904
UoS0196ST162ERR044905
UoS0205ST2496ERR044906
UoS0207ST199ERR044907
UoS0214ST36ERR044908
UoS0215ST36ERR044909
UoS0218ST444ERR044910
UoS0220ST176ERR044911
UoS0221ST162ERR044912
UoS0223ST1262ERR044913
UoS0232ST1262ERR044914
UoS0233ST162ERR044915
UoS0237ST1714ERR044916
UoS0242ST190ERR044917
UoS0245ST327ERR044918
UoS0251ST193ERR044919
UoS0252ST392ERR044920
UoS0254ST176ERR044921
UoS0256ST311ERR044922
UoS0257ST162ERR044923
UoS0262ST15ERR044924
UoS0263ST1714ERR044925
UoS0266ST65ERR044926
UoS0267ST124ERR044927
UoS0268ST439ERR044928
UoS0272ST180ERR044929
UoS0273ST138ERR044930
UoS0274ST1884ERR044931
UoS0276ST176ERR044932
UoS0279ST422ERR044933
UoS0280ST199ERR044934
UoS0281ST199ERR044935
UoS0284ST393ERR044936
UoS0285ST176ERR044937
UoS0288ST162ERR044938
UoS0289ST162ERR044939
UoS0290ST402ERR044940
UoS0291ST124ERR044941
UoS0297ST138ERR044942
UoS0301ST65ERR044943
UoS0302ST62ERR044944
UoS0303ST1862ERR044945
UoS0304ST2042ERR044946
UoS0305ST199ERR044947
UoS0307ST191ERR044948
UoS0308ST422ERR044949
UoS0310ST199ERR044950
UoS0311ST63ERR044951
UoS0314ST176ERR044952
UoS0315ST393ERR044953
UoS0316ST422ERR044954
UoS0317ST179ERR044955
UoS0318ST30ERR044956
UoS0319ST36ERR044957
UoS0320ST402ERR044958
UoS0321ST402ERR044959
UoS0322ST179ERR044960
UoS0324ST138ERR044961
UoS2001ST65ERR044962
UoS2002ST65ERR044963
UoS2003ST176ERR044964
UoS2006ST42ERR044965
UoS2011ST100ERR044966
UoS2014ST819ERR044967
UoS2018ST138ERR044968
UoS2021ST446ERR044969
UoS2024ST1884ERR044970
UoS2027ST4019ERR044971
UoS2029ST3460ERR044972
UoS2030ST469ERR044973
UoS2032ST30ERR044974
UoS2034ST62ERR044975
UoS2037ST62ERR044976
UoS2038ST65ERR044977
UoS2041ST392ERR044978
UoS2050ST138ERR044979
UoS2051ST1201ERR044980
UoS2052ST438ERR044981
UoS2054ST179ERR044982
UoS2055ST176ERR044983
UoS2058ST4020ERR044984
UoS2060ST1714ERR044985
UoS2063ST1635ERR044986
UoS2067ST438ERR044987
UoS2070ST36ERR044988
UoS2073ST1692ERR044989
UoS2074ST1692ERR044990
UoS2076ST199ERR044991
UoS2082ST4695ERR044992
UoS2090ST36ERR044993
UoS2092ST36ERR044994
UoS2105ST1692ERR044995
UoS2122ST392ERR044996
UoS2130ST62ERR044997
UoS2131ST62ERR044998
UoS2134ST179ERR044999
UoS2142ST199ERR045000
UoS2146ST124ERR045001
UoS2149ST4696ERR045002
UoS2153ST176ERR045003
UoS2166ST65ERR045004
UoS2168ST199ERR045005
UoS2173ST1760ERR045006
UoS2180ST1692ERR045007
UoS2186ST1877ERR045008
UoS2191ST311ERR045009
UoS2196ST698ERR045010
UoS2199ST698ERR045011
UoS2205ST62ERR045012
UoS2210ST36ERR045013
UoS2215ST1714ERR045014
UoS2216ST36ERR045015
UoS2217ST446ERR045016
UoS2225ST176ERR045017
UoS2227ST568ERR045018
UoS2233ST65ERR045019
UoS2235ST1797ERR045020
UoS2236ST392ERR045021
UoS2237ST138ERR045022
UoS2240ST162ERR045023
UoS2243ST138ERR045024
UoS2244ST36ERR045025
UoS2247ST176ERR045026
UoS2250ST402ERR045027
UoS2254ST698ERR045028
UoS2255ST311ERR045030
UoS2258ST2631ERR045029
UoS2261ST439ERR045031
UoS2271ST199ERR045032
UoS2275ST438ERR045033
UoS2279ST176ERR045034
UoS2280ST124ERR045035
UoS2287ST199ERR045036
UoS2288ST1714ERR045037
UoS2289ST1692ERR045038
UoS2297ST311ERR045039
UoS2298ST179ERR045040
UoS2300ST1862ERR045041
UoS2305ST242ERR045042
UoS2306ST433ERR045043
UoS2307ST460ERR045044
UoS2308ST65ERR045045
UoS2311ST4021ERR045046
UoS2315ST62ERR045047
UoS2316ST398ERR045048
UoS2319ST65ERR045049
UoS2323ST65ERR048206
UoS2324ST439ERR048207
UoS2325ST1692ERR048208
UoS2329ST36ERR048209
UoS2333ST30ERR048210
UoS2336ST65ERR048211
UoS2337ST65ERR048212
UoS2338ST1692ERR048213
UoS2340ST327ERR048214
UoS2343ST65ERR048215
UoS2346ST65ERR048216
UoS2351ST1692ERR048217
UoS2354ST1692ERR048218
UoS2359ST65ERR048219
UoS2370ST180ERR048220
UoS2371ST395ERR048221
UoS2373ST199ERR048222
UoS3001ST36ERR048223
UoS3003ST4423ERR048224
UoS3006ST62ERR048225
UoS3009ST439ERR048226
UoS3016ST433ERR048227
UoS3017ST438ERR048228
UoS3020ST199ERR048229
UoS3021ST62ERR046048
UoS3022ST1692ERR046049
UoS3024ST199ERR046050
UoS3026ST176ERR046051
UoS3029ST449ERR046052
UoS3031ST138ERR046053
UoS3032ST433ERR046054
UoS3033ST180ERR046055
UoS3038ST1635ERR046056
UoS3042ST66ERR046057
UoS3048ST199ERR046058
UoS3050ST1600ERR046059
UoS3055ST1692ERR046060
UoS3059ST4424ERR046061
UoS3060ST1150ERR046062
UoS3063ST65ERR046063
UoS3064ST1692ERR046064
UoS3065ST1766ERR046065
UoS3066ST190ERR046066
UoS3068ST42ERR046067
UoS3074ST1714ERR046068
UoS3077ST62ERR046069
UoS3079ST2220ERR046070
UoS3081ST63ERR046071
UoS3088ST398ERR046072
UoS3093ST698ERR046073
UoS3097ST452ERR046074
UoS3099ST1877ERR046075
UoS3108ST433ERR046076
UoS3109ST433ERR046077
UoS3115ST62ERR046078
UoS3122ST65ERR046079
UoS3123ST36ERR046080
UoS3138ST4697ERR046081
UoS3140ST449ERR046082
UoS3143ST448ERR046083
UoS3153ST199ERR046084
UoS3154ST58ERR046085
UoS3156ST393ERR046086
UoS3159ST1692ERR046087
UoS3160ST433ERR046088
UoS3161ST439ERR046089
UoS3162ST673ERR046090
UoS3164ST395ERR046091
UoS3165ST1262ERR046092
UoS3166ST1635ERR046093
UoS3171ST65ERR046094
UoS3176ST62ERR046095
UoS3180ST1692ERR046096
UoS3181ST452ERR046097
UoS3182ST1692ERR046098
UoS3190ST395ERR046099
UoS3192ST176ERR046100
UoS3200ST65ERR046101
UoS3205ST180ERR046102
UoS3210ST199ERR046103
UoS3220ST306ERR046104
UoS3225ST176ERR046105
UoS3226ST100ERR046106
UoS3227ST199ERR046107
UoS3233ST100ERR046108
UoS3234ST393ERR046109
UoS3235ST65ERR046110
UoS3240ST193ERR046111
UoS3245ST191ERR046112
UoS3247ST124ERR046113
UoS3248ST311ERR046114
UoS3249ST392ERR046115
UoS3250ST411ERR046116
UoS3251ST199ERR046117
UoS3252ST62ERR046118
UoS3255ST97ERR046119
UoS3256ST439ERR046120
UoS3257ST199ERR046121
UoS3258ST393ERR046122
UoS3259ST235ERR046123
UoS3264ST439ERR046124
UoS3267ST448ERR046125
UoS3271ST199ERR046126
UoS3277ST1692ERR046127
UoS3283ST438ERR046128
UoS3284ST1692ERR046129
UoS3286ST199ERR046130
UoS3287ST199ERR046131
UoS3293ST65ERR046132
UoS3298ST698ERR046133
UoS3299ST162ERR046134
UoS3300ST193ERR046135
UoS3301ST62ERR046136
UoS3314ST97ERR046137
UoS3315ST199ERR046138
UoS3321ST461ERR046139
UoS3324ST992ERR046140
UoS3325ST199ERR046141
UoS3326ST433ERR046142
UoS4002ST62ERR046143
UoS4008ST3734ERR046144
UoS4011ST72ERR046145
UoS4012ST62ERR046146
UoS4015ST1262ERR046147
UoS4020ST62ERR046148
UoS4024ST62ERR046149
UoS4027ST180ERR046150
UoS4028ST62ERR046151
UoS4029New Allele ERR046152
UoS4032ST1635ERR046153
UoS4036ST433ERR046154
UoS4039ST432ERR046155
UoS4044ST199ERR046156
UoS4049ST176ERR046157
UoS4054ST172ERR046158
UoS4071ST1201ERR046159
UoS4074ST673ERR046160
UoS4076ST438ERR046161
UoS4077ST439ERR046162
UoS4081ST65ERR046163
UoS4082ST81ERR046164
UoS4083ST62ERR046165
UoS4084ST42ERR046166
UoS4087ST1635ERR046167
UoS4091ST176ERR046168
UoS4096New STERR046169
UoS4099ST193ERR046170
UoS4100ST414ERR046171
UoS4104ST199ERR046172
UoS4106New STERR046173
UoS4109ST62ERR046174
UoS4131ST53ERR046175
UoS4133ST180ERR046176
UoS4134ST432ERR046177
UoS4138ST199ERR046178
UoS4139ST439ERR046179
UoS4150ST410ERR046180
UoS4151ST191ERR046181
UoS4155New STERR046182
UoS4157ST819ERR046183
UoS4164ST193ERR046184
UoS4165New STERR046185
UoS4166ST199ERR046186
UoS4167ST1877ERR046187
UoS4168ST698ERR046188
UoS4169ST819ERR046189
UoS4180ST62ERR046190
UoS4184ST100ERR046191
UoS4187ST1635ERR046192
UoS4191ST1692ERR046193
UoS4201ST30ERR046194
UoS4206ST392ERR046195
UoS4208ST4325ERR046196
UoS4214ST193ERR046197
UoS4223ST191ERR046198
UoS4226ST62ERR046199
UoS4227ST1692ERR046200
UoS4237ST65ERR046201
UoS4242ST65ERR046202
UoS4245ST393ERR046203
UoS4246ST393ERR046204
UoS4252ST698ERR046205
UoS4257ST673ERR046206
UoS4265New Allele ERR046207
UoS4269ST199ERR046208
UoS4270ST113ERR046209
UoS4273ST199ERR045350
UoS4275ST36ERR045351
UoS4279ST199ERR045352
UoS4285ST199ERR045353
UoS4287ST65ERR045354
UoS4289ST36ERR045355
UoS4292New STERR045356
UoS4294ST1635ERR045357
UoS4297ST193ERR045358
UoS4300ST1635ERR045359
UoS4310ST199ERR045360
UoS4311ST66ERR045361
UoS4314ST100ERR045362
UoS4318ST433ERR045363
UoS4320ST62ERR045364
UoS4322ST199ERR045365
UoS4326ST63ERR045366
UoS4330ST193ERR045367
UoS4337ST439ERR045368
UoS4338ST58ERR045369
UoS4339ST62ERR045370
UoS4342ST1373ERR045371
UoS4344ST1692ERR045372
UoS4346ST63ERR045373
UoS4350ST66ERR045374
UoS4356ST433ERR045375
UoS4361ST193ERR045376
UoS4362ST1262ERR045377
UoS4364ST199ERR045378
UoS4366ST1635ERR045379
UoS4369ST439ERR045380
UoS4370ST1635ERR045381
UoS4371ST1714ERR045382
UoS4372New STERR045383
UoS4373ST439ERR045384
UoS4375ST199ERR045385
UoS4380ST416ERR045386
UoS4382ST62ERR045387
UoS4384ST199ERR045388
UoS4385New STERR045389
UoS4386ST199ERR045390
UoS4388ST438ERR045391
UoS4393ST62ERR045392
UoS4399ST1876ERR045393
UoS5003TBCERR045394
UoS5006TBCERR045395
UoS5007TBCERR045396
UoS5012TBCERR045397
UoS5013TBCERR045398
UoS5014TBCERR045399
UoS5015TBCERR045400
UoS5016TBCERR045401
UoS5020TBCERR045402
UoS5021TBCERR045403
UoS5022TBCERR045404
UoS5023TBCERR045405
UoS5026TBCERR045406
UoS5027TBCERR045407
UoS5028TBCERR045408
UoS5030TBCERR045409
UoS5033TBCERR045410
UoS5038TBCERR045411
UoS5040TBCERR045412
UoS5043TBCERR045413
UoS5047TBCERR045414
UoS5050TBCERR045415
UoS5051TBCERR047125
UoS5053TBCERR047126
UoS5057TBCERR047127
UoS5059TBCERR047128
UoS5061TBCERR047129
UoS5062TBCERR047130
UoS5065TBCERR047131
UoS5066TBCERR047132
UoS5068TBCERR047133
UoS5072TBCERR047134
UoS5074TBCERR047135
UoS5079TBCERR047136
UoS5080TBCERR047137
UoS5083TBCERR047138
UoS5089TBCERR047139
UoS5098TBCERR047140
UoS5108TBCERR047141
UoS5109TBCERR047142
UoS5110TBCERR047143
UoS5113TBCERR047144
UoS5114TBCERR047145
UoS5119TBCERR045416
UoS5120TBCERR045417
UoS5121TBCERR045418
UoS5122TBCERR045419
UoS5124TBCERR045420
UoS5129TBCERR045421
UoS5133TBCERR045422
UoS5135TBCERR045423
UoS5136TBCERR045424
UoS5142TBCERR045425
UoS5144TBCERR045426
UoS5149TBCERR045427
UoS5152TBCERR045428
UoS5156TBCERR045429
UoS5157TBCERR045430
UoS5159TBCERR045431
UoS5163TBCERR045432
UoS5165TBCERR045433
UoS5166TBCERR045434
UoS5170TBCERR045435
UoS5171TBCERR045436
UoS5173TBCERR045437
UoS5178TBCERR047104
UoS5180TBCERR047105
UoS5181TBCERR047106
UoS5186TBCERR047107
UoS5189TBCERR047108
UoS5191TBCERR047109
UoS5193TBCERR047110
UoS5202TBCERR047111
UoS5203TBCERR047112
UoS5205TBCERR047113
UoS5209TBCERR047114
UoS5217TBCERR047115
UoS5218TBCERR047116
UoS5220TBCERR047117
UoS5222TBCERR047118
UoS5225TBCERR047119
UoS5226TBCERR047120
UoS5227TBCERR047121
UoS5233TBCERR047122
UoS5234TBCERR047123
UoS5235TBCERR047124
UoS5243TBCERR047146
UoS5247TBCERR047147
UoS5248TBCERR047148
UoS5249TBCERR047149
UoS5251TBCERR047150
UoS5259TBCERR047151
UoS5262TBCERR047152
UoS5263TBCERR047153
UoS5269TBCERR047154
UoS5270TBCERR047155
UoS5271TBCERR047156
UoS5274TBCERR047157
UoS5275TBCERR047158
UoS5276TBCERR047159
UoS5284TBCERR047160
UoS5285TBCERR047161
UoS5287TBCERR047162
UoS5288TBCERR047163
UoS5232TBCERR047164

Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment

Sample

Strain

Run Accession

TIGR4ATIGR4AERR065333
4030440304ERR065334
603M19603M19ERR065335
603ip603ipERR065336
30113011ERR065337
30123012ERR065338
30133013ERR065339
30143014ERR065340
30153015ERR065341
30163016ERR065342
30173017ERR065343
30183018ERR065344
30193019ERR065345
30203020ERR065346
30213021ERR065347
30223022ERR065348
30233023ERR065349
30243024ERR065350
30253025ERR065351
30263026ERR065352
3027a3027ERR065353
30283028ERR065354
3029a3029ERR065355
30303030ERR065287
30313031ERR065288
30323032ERR065289
30333033ERR065290
30343034ERR065291
30353035ERR065292
30363036ERR065293
30373037ERR065294
30383038ERR065295
30393039ERR065296
30403040ERR065297
30413041ERR065298
30433043ERR065299
30443044ERR065300
30453045ERR065301
30463046ERR065302
30473047ERR065303
30483048ERR065304
30493049ERR065305
30503050ERR065306
30513051ERR065307
30523052ERR065308
30533053ERR065309
30543054ERR065310
30553055ERR065311
30563056ERR065312
30573057ERR065313
30583058ERR065314
30593059ERR065315
30603060ERR065316
30613061ERR065317
30623062ERR065318
30633063ERR065319
3064a3064ERR065320
30653065ERR065321
30673067ERR065322
30683068ERR065323
30693069ERR065324
30703070ERR065325
30713071ERR065326
30723072ERR065327
30733073ERR065328
30743074ERR065329
30753075ERR065330
30763076ERR065331
30773077ERR065332
30783078ERR067983
30793079ERR067984
30803080ERR067985
30813081ERR067986
30823082ERR067987
30833083ERR067988
30843084ERR067989
30853085ERR067990
30863086ERR067991
30873087ERR067992
30883088ERR067993
30893089ERR067994
30903090ERR067995
30913091ERR067996
3092a3092ERR067997
30933093ERR067998
30943094ERR067999
30953095ERR068000
30963096ERR068001
30973097ERR068002
30983098ERR068003
30993099ERR068004
31003100ERR068005
31013101ERR068006
31023102ERR068007
31033103ERR068008
31083108ERR068009
31093109ERR068010
31103110ERR068011
31113111ERR068012
31123112ERR068013
31133113ERR068014
3114a3114ERR068015
31153115ERR068016
31163116ERR068017
31183118ERR068018
31193119ERR068019
31203120ERR068020
31213121ERR068021
3122a3122ERR068022
31233123ERR068023
31243124ERR068024
31253125ERR068025
31263126ERR068026
31273127ERR068027
31303130ERR068028
31313131ERR068029
3136a3136ERR068030
31373137ERR068031
31383138ERR068032
31393139ERR068033
31403140ERR068034
31413141ERR068035
31423142ERR068036
31433143ERR068037
31443144ERR068038
31463146ERR068039
31473147ERR068040
31493149ERR068041
31503150ERR068042
31513151ERR068043
31533153ERR068044
3154a3154ERR068045
31553155ERR068046
31563156ERR068047
31573157ERR068048
31583158ERR068049
3159-99p3159ERR068050
3159-1c3159ERR068051
3160a3160ERR067960
31633163ERR067961
31643164ERR067962
31653165ERR067963
31663166ERR067964
3167a3167ERR067965
31683168ERR067966
31693169ERR067967
31703170ERR067968
31713171ERR067969
31723172ERR067970
3173-1c3173ERR067971
3173-99p3173ERR067972
31743174ERR067973
31753175ERR067974
31763176ERR067975
31773177ERR067976
31783178ERR067977
31793179ERR067978
3180a3180ERR067979
31813181ERR067980
31823182ERR067981
31833183ERR067982
31843184ERR069683
31853185ERR069684
31863186ERR069685
31873187ERR069686
31883188ERR069687
31893189ERR069688
31903190ERR069689
31913191ERR069690
31923192ERR069691
31933193ERR069692
31943194ERR069693
31953195ERR069694
31963196ERR069695
31973197ERR069696
31983198ERR069697
31993199ERR069698
32003200ERR069699
32013201ERR069700
32023202ERR069701
32033203ERR069702
3204a3204ERR069703
32053205ERR069704
32063206ERR069705
32073207ERR069706
32083208ERR069707
32093209ERR069708
32103210ERR069709
32113211ERR069710
32123212ERR069711
32133213ERR069712
32143214ERR069713
32153215ERR069714
32163216ERR069715
32173217ERR069716
32183218ERR069717
32193219ERR069718
32203220ERR069719
3221a3221ERR069720
32223222ERR069721
32233223ERR069722
32243224ERR069723
32253225ERR069724
32263226ERR069725
32273227ERR069726
32283228ERR069727
32293229ERR069728
32303230ERR069729
32313231ERR069730
001334001334ERR069731
001996001996ERR069732
007649007649ERR069733
015445015445ERR069734
018044018044ERR069735
025310025310ERR069736
027999027999ERR069737
035100035100ERR069738
040241040241ERR069739
042397042397ERR069740
042861042861ERR069741
044744044744ERR069742
049470049470ERR069743
051715051715ERR069744
057144057144ERR069745
062031062031ERR069746
065435065435ERR069747
065645065645ERR069748
067094067094ERR069749
072511072511ERR069750
072782072782ERR069751
074124074124ERR069752
080104080104ERR069753
083980083980ERR069754
089848089848ERR069755
092280092280ERR069756
093209093209ERR069757
095344095344ERR069758
101058101058ERR069759
102720102720ERR069760
103453103453ERR069761
105542105542ERR069762
108480108480ERR069763
110093110093ERR069764
118039118039ERR069765
119571119571ERR069766
120581120581ERR069767
127530127530ERR069768
132571132571ERR069769
135631135631ERR069770
135771135771ERR069771
142534142534ERR069772
144370144370ERR069773
146066146066ERR069774
147587147587ERR069775
148056148056ERR069776
151684151684ERR069777
153408153408ERR069778
153438153438ERR069779
154389154389ERR069780
160449160449ERR069781
160986160986ERR069782
163286163286ERR069783
166637166637ERR069784
173015173015ERR069785
174702174702ERR069786
179743179743ERR069787
181272181272ERR069788
187406187406ERR069789
203692203692ERR069790
208866208866ERR069791
209464209464ERR069792
209930209930ERR069793
210162210162ERR069794
217475217475ERR069795
218186218186ERR069796
218229218229ERR069797
223832223832ERR069798
234323234323ERR069799
239434239434ERR069800
242588242588ERR069801
248734248734ERR069802
255210255210ERR069803
263137263137ERR069804
266035266035ERR069805
268660268660ERR069806
276430276430ERR069807
277394277394ERR069808
279388279388ERR069809
284968284968ERR069810
291880291880ERR069811
299801299801ERR069812
302649302649ERR069813
303656303656ERR069814
304793304793ERR069815
306435306435ERR069816
312034312034ERR069817
312942312942ERR069818
323485323485ERR069819
333793333793ERR069820
334847334847ERR069821
335574335574ERR069822
336850336850ERR069823
341365341365ERR069824
342672342672ERR069825
354557354557ERR069826
359370359370ERR069827
362412362412ERR069828
365152365152ERR069829
365502365502ERR069830
366293366293ERR069831
369820369820ERR069832
372297372297ERR069833
379678379678ERR069834
383739383739ERR069835
385385385385ERR069836
386329386329ERR069837
388483388483ERR069838
389109389109ERR069839
397079397079ERR069840
403790403790ERR069841
404463404463ERR069842
416185416185ERR069843
420881420881ERR065953
422264422264ERR065954
427937427937ERR065955
430772430772ERR065956
436154436154ERR065957
436915436915ERR065958
438180438180ERR065959
439699439699ERR065960
446376-1c446376ERR065961
446376-99p446376ERR065962
448643448643ERR065963
459747459747ERR065964
462746462746ERR065965
462956462956ERR065966
472699472699ERR065967
473937473937ERR065968
481643481643ERR065969
483391483391ERR065970
487827487827ERR065971
492706492706ERR065972
503574503574ERR065973
508907508907ERR065974
509365509365ERR065975
BR1000BR1000ERR129025
BR1003BR1003ERR129026
BR1008aBR1008ERR129027
BR1012BR1012ERR129028
BR1014aBR1014ERR129029
BR1019BR1019ERR129030
BR1022-1BR1022-1ERR129031
BR1022-2BR1022-2ERR129032
BR1023BR1023ERR129033
BR1025BR1025ERR129034
BR1029BR1029ERR129035
BR1036BR1036ERR129036
BR1039BR1039ERR129037
BR1041BR1041ERR129038
BR1045BR1045ERR129039
BR1048BR1048ERR129040
BR1050BR1050ERR129041
BR1055BR1055ERR129042
BR1058BR1058ERR129043
BR1064BR1064ERR129044
BR1065BR1065ERR129045
BR1068aBR1068ERR129046
BR1074BR1074ERR129047
BR1076BR1076ERR129048
BR1080BR1080ERR129049
BR1081BR1081ERR129050
BR1082BR1082ERR129051
BR1084BR1084ERR129052
BR1085BR1085ERR129053
BR1086BR1086ERR129054
BR1090BR1090ERR129055
BR1098BR1098ERR129056
BR1101BR1101ERR129057
BR1104BR1104ERR129058
BR1105BR1105ERR129059
BR1106BR1106ERR129060
BR1109BR1109ERR129061
BR1111BR1111ERR129062
BR1112BR1112ERR129063
BR1113BR1113ERR129064
BR1114BR1114ERR129065
BR1115BR1115ERR129066
BR1116BR1116ERR129067
BR1117BR1117ERR129068
BR1119BR1119ERR129069
BR1126BR1126ERR129070
CH2006CH2006ERR129071
CH2007CH2007ERR129072
CH2008CH2008ERR129073
CH2016CH2016ERR129074
CH2017CH2017ERR129075
CH2026CH2026ERR129076
CH2029CH2029ERR129077
CH2033CH2033ERR129078
CH2053aCH2053ERR129079
CH2054CH2054ERR129080
CH2060CH2060ERR129081
CH2061CH2061ERR129082
CH2067CH2067ERR129083
CH2069CH2069ERR129084
CH2072CH2072ERR129085
CH2074CH2074ERR129086
CH2075CH2075ERR129087
CH2079CH2079ERR129088
CH2083CH2083ERR129089
CH2084CH2084ERR129090
CH2085CH2085ERR129091
CH2090CH2090ERR129092
CH2091CH2091ERR129093
CH2105CH2105ERR129094
CH2106CH2106ERR129095
CH2108CH2108ERR129096
CH2109CH2109ERR129097
CH2116CH2116ERR129098
CH2123CH2123ERR129099
CH2124CH2124ERR129100
GL3003GL3003ERR129101
GL3012GL3012ERR129102
GL3015GL3015ERR129103
GL3019GL3019ERR129104
GL3021GL3021ERR129105
GL3023GL3023ERR129106
GL3024GL3024ERR129107
GL3029GL3029ERR129108
GL3030GL3030ERR129109
GL3031GL3031ERR129110
GL3032GL3032ERR129111
GL3036GL3036ERR129112
GL3040GL3040ERR129113
GL3042GL3042ERR129114
GL3043GL3043ERR129115
GL3049GL3049ERR129116
GL3050GL3050ERR129117
GL3060GL3060ERR129118
GL3061GL3061ERR129119
GL3066GL3066ERR129120
GL3071GL3071ERR129121
GL3075GL3075ERR129122
GL3077GL3077ERR129123
GL3078GL3078ERR129124
GL3080GL3080ERR129125
LE4000LE4000ERR129126
LE4005LE4005ERR129127
LE4007LE4007ERR129128
LE4011LE4011ERR129129
LE4012LE4012ERR129130
LE4018LE4018ERR129131
LE4019LE4019ERR129132
LE4020LE4020ERR129133
LE4021LE4021ERR129134
LE4030LE4030ERR129135
LE4038LE4038ERR129136
LE4040LE4040ERR129137
LE4047LE4047ERR129138
LE4050LE4050ERR129139
LE4055LE4055ERR129140
LE4058LE4058ERR129141
LE4059LE4059ERR129142
LE4062LE4062ERR129143
LE4073LE4073ERR129144
LE4079LE4079ERR129145
LE4081LE4081ERR129146
LE4083LE4083ERR129147
LE4084LE4084ERR129148
LE4092LE4092ERR129149
LE4093LE4093ERR129150
LE4099LE4099ERR129151
LE4100LE4100ERR129152
LE4106LE4106ERR129153
LE4111LE4111ERR129154
LE4117LE4117ERR129155
LE4118LE4118ERR129156
LE4119LE4119ERR129157
LE4124LE4124ERR129158
LE4127LE4127ERR129159
LE4142LE4142ERR129160
LE4150LE4150ERR129161
MD5007MD5007ERR129162
MD5008MD5008ERR129163
MD5021MD5021ERR129164
MD5023aMD5023ERR129165
MD5027MD5027ERR129166
MD5029MD5029ERR129167
MD5030aMD5030ERR129168
MD5031MD5031ERR129169
MD5033MD5033ERR129170
MD5035MD5035ERR129171
MD5037aMD5037ERR129172
MD5042MD5042ERR129173
MD5045MD5045ERR129174
MD5052MD5052ERR129175
MD5068MD5068ERR129176
MD5070MD5070ERR129177
MD5071MD5071ERR129178
MD5081MD5081ERR129179
MD5090MD5090ERR129180
MD5096MD5096ERR129181
MD5103MD5103ERR129182
MD5104MD5104ERR129183
MD5106MD5106ERR129184
MD5107MD5107ERR129185
MD5110MD5110ERR129186
ND6000ND6000ERR129187
ND6005ND6005ERR129188
ND6006-1cND6006-1cERR129189
ND6006-99pND6006-99pERR129190
ND6008-1cND6008-1cERR129191
ND6008-99pND6008-99pERR129192
ND6010ND6010ERR129193
ND6012ND6012ERR129194
ND6017ND6017ERR129195
ND6019ND6019ERR129196
ND6022ND6022ERR129197
ND6028ND6028ERR129198
ND6034ND6034ERR129199
ND6038ND6038ERR129200
ND6039ND6039ERR129201
ND6042ND6042ERR129202
ND6046ND6046ERR129203
ND6047ND6047ERR129204
ND6051ND6051ERR129205
ND6052ND6052ERR129206
ND6053aND6053ERR129207
ND6059ND6059ERR129208
ND6064ND6064ERR129209
ND6073ND6073ERR129210
ND6085ND6085ERR129211
ND6097ND6097ERR129212
ND6100ND6100ERR129213
ND6103ND6103ERR129214
ND6104ND6104ERR129215
ND6109ND6109ERR129216
ND6110ND6110ERR124217
ND6111ND6111ERR124218
ND6115ND6115ERR124219
ND6116ND6116ERR124220
ND6117ND6117ERR124221
ND6118ND6118ERR124222
ND6119ND6119ERR124223
ND6120ND6120ERR124224
ND6121ND6121ERR124225
ND6123aND6123ERR124226
ND6124ND6124ERR124227
ND6130ND6130ERR124228
ND6132ND6132ERR124229
ND6133ND6133ERR124230
ND6134ND6134ERR124231
ND6135ND6135ERR124232
ND6137ND6137ERR124233
ND6139ND6139ERR124234
ND6140ND6140ERR124235
ND6141ND6141ERR124236
ND6142ND6142ERR124237
ND6144ND6144ERR124238
ND6147ND6147ERR124239
ND6151ND6151ERR124240
ND6153ND6153ERR124241
ND6156ND6156ERR124242
ND6158ND6158ERR124243
NP7004NP7004ERR124244
NP7006NP7006ERR124245
NP7010NP7010ERR124246
NP7012NP7012ERR124247
NP7013NP7013ERR124248
NP7017NP7017ERR124249
NP7020NP7020ERR124250
NP7022NP7022ERR124251
NP7026NP7026ERR124252
NP7028NP7028ERR124253
NP7029NP7029ERR124254
NP7047NP7047ERR124255
NP7052NP7052ERR124256
NP7053NP7053ERR124257
NP7057NP7057ERR124258
NP7059NP7059ERR124259
NP7062NP7062ERR124260
NP7063NP7063ERR124261
NP7064NP7064ERR124262
NP7066NP7066ERR124263
NP7070NP7070ERR124264
NP7076NP7076ERR124265
NP7078NP7078ERR124266
NP7081NP7081ERR124267
NP7095NP7095ERR124268
NP7100NP7100ERR124269
NP7101NP7101ERR124270
NP7103NP7103ERR124271
NP7105NP7105ERR124272
NP7109NP7109ERR124273
NP7112NP7112ERR124274
NP7113NP7113ERR124275
NP7118NP7118ERR124276
NP7122NP7122ERR124277
PT8000PT8000ERR124278
PT8003PT8003ERR124279
PT8004PT8004ERR124280
PT8009PT8009ERR124281
PT8011PT8011ERR124282
PT8013PT8013ERR124283
PT8014PT8014ERR124284
PT8016PT8016ERR124285
PT8019PT8019ERR124286
PT8021PT8021ERR124287
PT8025PT8025ERR124288
PT8029PT8029ERR124289
PT8035PT8035ERR124290
PT8037PT8037ERR124291
PT8039PT8039ERR124292
PT8040PT8040ERR124293
PT8044PT8044ERR124294
PT8052PT8052ERR124295
PT8053PT8053ERR124296
PT8054PT8054ERR124297
PT8063PT8063ERR124298
PT8064PT8064ERR124299
PT8065PT8065ERR124300
PT8069PT8069ERR124301
PT8072aPT8072ERR124302
PT8074PT8074ERR124303
PT8076PT8076ERR124304
PT8081PT8081ERR124305
PT8082PT8082ERR124306
PT8085PT8085ERR124307
PT8086PT8086ERR124308
PT8090PT8090ERR124309
PT8092PT8092ERR124310
PT8093PT8093ERR124311
PT8094PT8094ERR124312
PT8098PT8098ERR124313
PT8105PT8105ERR124314
PT8106PT8106ERR124315
PT8107PT8107ERR124316
PT8114PT8114ERR124317
PT8116PT8116ERR124318
PT8120PT8120ERR124319
422264rpt422264rptERR124320
6030160301ERR124321
605R605RERR124322
606R606RERR124323
23062306ERR124324
903ip903ipERR124325
2306ip2306ipERR124326
606Tip606TipERR124327
2306TRip2306TRipERR124328
2306TR2306TRERR124329
903TRip903TRipERR124330
903TR903TRERR124331
606TR606TRERR124332
903R-98903R-98ERR124333
RH9PRH9PERR124334
RH10PRH10PERR124335
RH11PRH11PERR124336
RH12PRH12PERR124337
xen11xen11ERR124338
D39RD39RERR124339
D39_2x_RD39_2x_RERR124340
D39_1a2x_RD39_1a2x_RERR124341
D39_1a2x2b_RD39_1a2x2b_RERR124342
901R901RERR124343
901_2x_R901_2x_RERR124344
901_2x2b_R901_2x2b_RERR124345
901_2x2b1a_R901_2x2b1a_RERR124346
607R05607R05ERR124347
607_2x_RB607_2x_RBERR124348
607_2x2b_RB607_2x2b_RBERR124349
607_2x2b1a_RB607_2x2b1a_RBERR124350
030401030401ERR124351
0305m0305mERR124352
061801061801ERR124353
070301070301ERR124354
100101100101ERR124355
100401100401ERR124356
140101140101ERR124357
230101230101ERR124358
050101050101ERR124359
010201010201ERR124360

Diversity of MRSA

Sample

Strain

Run Accession

1943STDY5461514UnknownERR294362
1943STDY5461513UnknownERR294361

Streptococcus pneumoniae samples from Malawi

Sample

Strain

Run Accession

BAN14BUnknownERR068052
BAN152UnknownERR068053
BAN156UnknownERR068054
BAN15EUnknownERR068055
BAN15NUnknownERR068056
BAN15RUnknownERR068057
BAN15SUnknownERR068058
BAN17GUnknownERR068059
BAN17UUnknownERR068060
BAN17VUnknownERR068061
BAN17WUnknownERR068062
BAN17YUnknownERR068063
BAN18MUnknownERR068064
BAN18VUnknownERR068065
BAN195UnknownERR068066
BAN196UnknownERR068067
BAN19GUnknownERR068068
BAN19JUnknownERR068069
BAN19QUnknownERR068070
BAN19RUnknownERR068071
BAN1A3UnknownERR068072
BAN1ALUnknownERR068073
BAN1ARUnknownERR068074
BAN1ASUnknownERR068075
BAN1ATUnknownERR068076
BAN1AUUnknownERR068077
BAN1B6UnknownERR068078
BAN1BAUnknownERR068079
BAN1BCUnknownERR068080
BAN1BNUnknownERR068081
BAN1BTUnknownERR068082
BAN1BUUnknownERR068083
BAN1BVUnknownERR068084
BAN1C0UnknownERR068085
BAN1C2UnknownERR068086
BAN1C7UnknownERR068087
BAN1CRUnknownERR068088
BAN1D8UnknownERR068089
BAN1DEUnknownERR068090
BAN1DVUnknownERR068091
BAN1E4UnknownERR068092
BAN1E7UnknownERR068093
BAN1EJUnknownERR068094
BAN1ELUnknownERR068095
BAN1EPUnknownERR068096
BAN1ETUnknownERR068097
BAN1EYUnknownERR068098
BAN1FBUnknownERR068099
BAN1G3UnknownERR068100
BAN1GBUnknownERR068101
BAN1GEUnknownERR068102
BAN1GFUnknownERR068103
BAN1GHUnknownERR068104
BAN1GVUnknownERR068105
BAN1H9UnknownERR068106
BAN1HCUnknownERR068107
BAN1HPUnknownERR068108
BAN1HXUnknownERR068109
BAN1I6UnknownERR068110
BAN1I8UnknownERR068111
BAN1I9UnknownERR068112
BAN1IDUnknownERR068113
BAN1ILUnknownERR068114
BAN1J0UnknownERR068115
BAN1JKUnknownERR068116
BAN1JLUnknownERR068117
BAN1JSUnknownERR068118
BAN1KAUnknownERR068119
BAN1KTUnknownERR068120
BAN1MEUnknownERR068121
BAN1MHUnknownERR068122
BAN1P3UnknownERR068123
BAN1PYUnknownERR068124
BAN1Q3UnknownERR068125
BAN1Q4UnknownERR068126
BAN1QDUnknownERR068127
BAN1QFUnknownERR068128
BAN1QHUnknownERR068129
BAN1QRUnknownERR068130
BAN1QWUnknownERR068131
BAN1QZUnknownERR068132
BAN1R9UnknownERR068133
BAN1RAUnknownERR068134
BAN1RBUnknownERR068135
BAN1RHUnknownERR068136
BAN1RKUnknownERR068137
BAN1S3UnknownERR068138
BAN1S4UnknownERR068139
BAN1SAUnknownERR068140
BAN1SEUnknownERR068141
BAN1SVUnknownERR068142
BAN1SXUnknownERR068143
BAN1TNUnknownERR068144
BAN1TQUnknownERR068145
BAN1TTUnknownERR068146
BAN1TUUnknownERR068147
BAN1TXUnknownERR068148
BAN1U2UnknownERR068149
BAN1UMUnknownERR068150
BAN1UQUnknownERR068151
BAN1V9UnknownERR068152
BAN1VEUnknownERR068153
BAN1WTUnknownERR068154
BAN209UnknownERR068155
BAN223UnknownERR068156
BAN22FUnknownERR068157
BAN23TUnknownERR068158
BAN23WUnknownERR068159
BAN244UnknownERR068160
BAN246UnknownERR068161
BAN258UnknownERR068162
BAN26EUnknownERR068163
BAN26NUnknownERR068164
BAN2OCUnknownERR068165
BAN2ODUnknownERR068166
BAN2SBUnknownERR068167
BAN2SQUnknownERR068168
BAN723UnknownERR068169
BAN826UnknownERR068170
BANO42UnknownERR068171
BAP122UnknownERR068172
A29030UnknownERR068173
A29265UnknownERR068174
A30992UnknownERR068175
A31105UnknownERR068176
A31122UnknownERR068177
A31198UnknownERR068178
A31198aUnknownERR068179
A31265UnknownERR068180
A31349UnknownERR068181
A31361UnknownERR068182
A31584UnknownERR068183
A31918UnknownERR068184
A32279UnknownERR068185
A32497UnknownERR068186
A32572UnknownERR068187
A32849UnknownERR068188
A34857UnknownERR068189
A35264UnknownERR068190
A35715UnknownERR068191
A35744UnknownERR068192
A35786UnknownERR068193
A35997UnknownERR068194
A36147UnknownERR068195
A36173UnknownERR068196
A36529UnknownERR068197
A36611UnknownERR068198
A36646UnknownERR068199
A36782UnknownERR068200
A36891UnknownERR068201
A37004UnknownERR068202
A37046UnknownERR068203
A37089UnknownERR068204
A37297UnknownERR068205
A37452UnknownERR068206
A37482UnknownERR068207
A37501UnknownERR068208
A37837UnknownERR068209
A38608UnknownERR068210
A40924UnknownERR068211
A41112UnknownERR068212
A41470UnknownERR068213
A42501UnknownERR068214
A42552UnknownERR068215
A43030UnknownERR068216
A43126UnknownERR068217
A43416UnknownERR068218
A43904UnknownERR068219
A44013UnknownERR068220
A44026UnknownERR068221
A44049UnknownERR068222
A44163UnknownERR068223
A44175UnknownERR068224
A49649UnknownERR068225
A50227UnknownERR068226
A51119UnknownERR068227
A51189UnknownERR068228
A51425UnknownERR068229
A51905UnknownERR068230
A51944UnknownERR068231
A51983UnknownERR068232
A52232UnknownERR068233
A52248UnknownERR068234
A52402UnknownERR068235
A53108UnknownERR068236
A53112UnknownERR068237
A53532UnknownERR068238
A53861UnknownERR068239
A53886UnknownERR068240
A54130UnknownERR068241
A54575UnknownERR068242
A55458UnknownERR085953
A55458UnknownERR068244
A56826UnknownERR068245
A56826UnknownERR085954
A57058UnknownERR068246
A57058UnknownERR085955
A58264UnknownERR085956
A58264UnknownERR068247
A58785UnknownERR085957
A58785UnknownERR068248
A59399UnknownERR085958
A59399UnknownERR068249
A59539UnknownERR068250
A59539UnknownERR085959
B10199UnknownERR068251
B10199UnknownERR085960
B10365aUnknownERR085961
B10365aUnknownERR068252
B11055UnknownERR085962
B11055UnknownERR068253
B11670UnknownERR068254
B11670UnknownERR085963
B12027UnknownERR068255
B12027UnknownERR085964
B17224UnknownERR068256
B17224UnknownERR085965
B17789UnknownERR085966
B17789UnknownERR068257
B17998UnknownERR068258
B17998UnknownERR085967
B18042UnknownERR068259
B18042UnknownERR085968
B18107UnknownERR085969
B18107UnknownERR068260
B18210aUnknownERR085970
B18210aUnknownERR068261
B18340UnknownERR085971
B18340UnknownERR068262
B18408UnknownERR068263
B18408UnknownERR085972
B18494UnknownERR068264
B18494UnknownERR085973
B18678UnknownERR068265
B18678UnknownERR085974
B19190UnknownERR068266
B19190UnknownERR085975
B19554UnknownERR068267
B19554UnknownERR085976
B19661UnknownERR085977
B19661UnknownERR068268
B19728UnknownERR085978
B19728UnknownERR068269
B19805UnknownERR068270
B19805UnknownERR085979
B19944UnknownERR085980
B19944UnknownERR068271
B20065UnknownERR085981
B20065UnknownERR068272
B20084UnknownERR068273
B20084UnknownERR085982
B20539UnknownERR068274
B20539UnknownERR085983
B20605UnknownERR068275
B20605UnknownERR085984
B20631UnknownERR068276
B20631UnknownERR085985
B20776UnknownERR068277
B20776UnknownERR085986
B21503UnknownERR085987
B21503UnknownERR068278
B21544UnknownERR068279
B21544UnknownERR085988
B21600UnknownERR085989
B21600UnknownERR068280
B21609UnknownERR085990
B21609UnknownERR068281
B21950UnknownERR068282
B21950UnknownERR085991
B21980UnknownERR068283
B21980UnknownERR085992
B21982UnknownERR085993
B21982UnknownERR068284
B22069UnknownERR068285
B22069UnknownERR085994
B22092UnknownERR068286
B22092UnknownERR085995
B22322UnknownERR068287
B22322UnknownERR085996
B22339UnknownERR068288
B22339UnknownERR085997
B26112UnknownERR085998
B26112UnknownERR068289
B8984UnknownERR068290
B8984UnknownERR085999
B9517UnknownERR086000
B9517UnknownERR068291
B9988UnknownERR086001
B9988UnknownERR068292
C12480aUnknownERR086002
C12480aUnknownERR068293
C12675aUnknownERR086003
C12675aUnknownERR068294
C12797aUnknownERR068295
C12797aUnknownERR086004
C12879aUnknownERR068296
C12879aUnknownERR086005
C14257UnknownERR086006
C14257UnknownERR068297
C14277UnknownERR068298
C14277UnknownERR086007
C14971UnknownERR086008
C14971UnknownERR068299
C17711UnknownERR086009
C17711UnknownERR068300
C17952UnknownERR068301
C17952UnknownERR086010
C18075UnknownERR068302
C18075UnknownERR086011
C18113UnknownERR086012
C18113UnknownERR068303
C18320UnknownERR068304
C18320UnknownERR086013
C18354UnknownERR068305
C18354UnknownERR086014
C18508UnknownERR068306
C18508UnknownERR086015
C18913UnknownERR068307
C18913UnknownERR086016
C18919UnknownERR068308
C18919UnknownERR086017
C18952UnknownERR086018
C18952UnknownERR068309
C19000UnknownERR086019
C19000UnknownERR068310
C19054UnknownERR068311
C19054UnknownERR086020
C20393UnknownERR068312
C20393UnknownERR086021
C20505UnknownERR068313
C20505UnknownERR086022
C20650UnknownERR086023
C20650UnknownERR068314
C20742UnknownERR086024
C20742UnknownERR068315
C20833UnknownERR068316
C20833UnknownERR086025
C20892UnknownERR068317
C20892UnknownERR086026
C20932UnknownERR068318
C20932UnknownERR086027
C21008UnknownERR086028
C21008UnknownERR068319
C21075UnknownERR068320
C21075UnknownERR086029
C21085UnknownERR086030
C21085UnknownERR068321
C21127UnknownERR068322
C21127UnknownERR086031
C22644UnknownERR068323
C22644UnknownERR086032
C23125UnknownERR068324
C23125UnknownERR086033
C23171UnknownERR086034
C23171UnknownERR068325
C23295UnknownERR068326
C23295UnknownERR086035
C23321UnknownERR068327
C23321UnknownERR086036
C23347UnknownERR068328
C23347UnknownERR086037
C23411UnknownERR068329
C23411UnknownERR086038
C23437UnknownERR068330
C23437UnknownERR086039
C23601UnknownERR068331
C23601UnknownERR086040
C23619UnknownERR068332
C23619UnknownERR086041
C23756UnknownERR068333
C23756UnknownERR086042
C23763UnknownERR068334
C23763UnknownERR086043
D24854UnknownERR086044
D24854UnknownERR068335
D27102UnknownERR068336
D27102UnknownERR086045
D27950UnknownERR068337
D27950UnknownERR086046
D35438UnknownERR086047
D35438UnknownERR068338
D38557UnknownERR086048
D38557UnknownERR068339
D38708UnknownERR064598
D38708UnknownERR085857
D39094UnknownERR064599
D39094UnknownERR085858
D45902UnknownERR064600
D45902UnknownERR085859
D46845UnknownERR064601
D46845UnknownERR085860
D46845aUnknownERR085861
D46845aUnknownERR064602
D48490UnknownERR085862
D48490UnknownERR064603
D49319UnknownERR064604
D49319UnknownERR085863
D49759UnknownERR085864
D49759UnknownERR064605
D52077UnknownERR085865
D52077UnknownERR064606
D55280UnknownERR085866
D55280UnknownERR064607
D55377UnknownERR064608
D55377UnknownERR085867
D56103UnknownERR085868
D56103UnknownERR064609
D56226UnknownERR064610
D56226UnknownERR085869
D56983UnknownERR085870
D56983UnknownERR064611
MAM6_1UnknownERR085871
MAM6_1UnknownERR064612
MAM6_2UnknownERR064613
MAM6_2UnknownERR085872
MAM6_3UnknownERR085873
MAM6_3UnknownERR064614
MAM6_4UnknownERR085874
MAM6_4UnknownERR064615
MBM2_1UnknownERR064616
MBM2_1UnknownERR085875
MBM2_2UnknownERR064617
MBM2_2UnknownERR085876
MBM2_3UnknownERR085877
MBM2_3UnknownERR064618
MBM2_4UnknownERR085878
MBM2_4UnknownERR064619
MBM5_1UnknownERR064620
MBM5_1UnknownERR085879
MBM5_2UnknownERR085880
MBM5_2UnknownERR064621
MBM5_3UnknownERR085881
MBM5_3UnknownERR064622
MBM5_4UnknownERR064623
MBM5_4UnknownERR085882
MCM4_1UnknownERR064624
MCM4_1UnknownERR085883
MCM4_2UnknownERR064625
MCM4_2UnknownERR085884
MCM4_3UnknownERR064626
MCM4_3UnknownERR085885
MCM4_4UnknownERR064627
MCM4_4UnknownERR085886
MCM6_1UnknownERR064628
MCM6_1UnknownERR085887
MCM6_2UnknownERR085888
MCM6_2UnknownERR064629
MCM6_3UnknownERR064630
MCM6_3UnknownERR085889
MCM6_4UnknownERR085890
MCM6_4UnknownERR064631
MCM7_1UnknownERR085891
MCM7_1UnknownERR064632
MCM7_2UnknownERR064633
MCM7_2UnknownERR085892
MCM7_3UnknownERR064634
MCM7_3UnknownERR085893
MCM7_4UnknownERR085894
MCM7_4UnknownERR064635
MCM11_1UnknownERR064636
MCM11_1UnknownERR085895
MCM11_2UnknownERR085896
MCM11_2UnknownERR064637
MCM11_3UnknownERR085897
MCM11_3UnknownERR064638
MCM11_4UnknownERR085898
MCM11_4UnknownERR064639
MCM12_1UnknownERR064640
MCM12_1UnknownERR085899
MCM12_2UnknownERR085900
MCM12_2UnknownERR064641
MCM12_3UnknownERR085901
MCM12_3UnknownERR064642
MCM12_4UnknownERR085902
MCM12_4UnknownERR064643
MCM14_1UnknownERR085903
MCM14_1UnknownERR064644
MCM14_2UnknownERR085904
MCM14_2UnknownERR064645
MCM14_3UnknownERR064646
MCM14_3UnknownERR085905
MCM14_4UnknownERR085906
MCM14_4UnknownERR064647
MDM4_1UnknownERR085907
MDM4_1UnknownERR064648
MDM4_2UnknownERR064649
MDM4_2UnknownERR085908
MDM4_3UnknownERR085909
MDM4_3UnknownERR064650
MDM4_4UnknownERR064651
MDM4_4UnknownERR085910
MDM6_1UnknownERR085911
MDM6_1UnknownERR064652
MDM6_2UnknownERR064653
MDM6_2UnknownERR085912
MDM6_3UnknownERR064654
MDM6_3UnknownERR085913
MDM6_4UnknownERR085914
MDM6_4UnknownERR064655
MDM8_1UnknownERR064656
MDM8_1UnknownERR085915
MDM8_2UnknownERR064657
MDM8_2UnknownERR085916
MDM8_3UnknownERR064658
MDM8_3UnknownERR085917
MDM8_4UnknownERR064659
MDM8_4UnknownERR085918
MDM9_1UnknownERR064660
MDM9_1UnknownERR085919
MDM9_2UnknownERR085920
MDM9_2UnknownERR064661
MDM9_3UnknownERR064662
MDM9_3UnknownERR085921
MDM9_4UnknownERR064663
MDM9_4UnknownERR085922
MDM11_1UnknownERR064664
MDM11_1UnknownERR085923
MDM11_2UnknownERR085924
MDM11_2UnknownERR064665
MDM11_3UnknownERR064666
MDM11_3UnknownERR085925
MDM11_4UnknownERR085926
MDM11_4UnknownERR064667
MDM13_1UnknownERR064668
MDM13_1UnknownERR085927
MDM13_2UnknownERR064669
MDM13_2UnknownERR085928
MDM13_3UnknownERR064670
MDM13_3UnknownERR085929
MDM13_4UnknownERR064671
MDM13_4UnknownERR085930
MAR1_1UnknownERR064672
MAR1_1UnknownERR085931
MAR1_2UnknownERR064673
MAR1_2UnknownERR085932
MAR1_3UnknownERR064674
MAR1_3UnknownERR085933
MAR1_4UnknownERR064675
MAR1_4UnknownERR085934
MAR4_1UnknownERR064676
MAR4_1UnknownERR085935
MAR4_2UnknownERR085936
MAR4_2UnknownERR064677
MAR4_3UnknownERR064678
MAR4_3UnknownERR085937
MAR4_4UnknownERR064679
MAR4_4UnknownERR085938
MAR5_1UnknownERR085939
MAR5_1UnknownERR064680
MAR5_2UnknownERR064681
MAR5_2UnknownERR085940
MAR5_3UnknownERR085941
MAR5_3UnknownERR064682
MAR5_4UnknownERR085942
MAR5_4UnknownERR064683
MAR6_1UnknownERR085943
MAR6_1UnknownERR064684
MAR6_2UnknownERR064685
MAR6_2UnknownERR085944
MAR6_3UnknownERR064686
MAR6_3UnknownERR085945
MAR6_4UnknownERR064687
MAR6_4UnknownERR085946
MAR7_1UnknownERR064688
MAR7_1UnknownERR085947
MAR7_2UnknownERR085948
MAR7_2UnknownERR064689
MAR7_3UnknownERR064690
MAR7_3UnknownERR085949
MAR7_4UnknownERR064691
MAR7_4UnknownERR085950
MBR5_1UnknownERR064692
MBR5_1UnknownERR085951
MBR5_2UnknownERR064693
MBR5_2UnknownERR085952
MBR5_3UnknownERR064724
MBR5_4UnknownERR064725
MBR7_1UnknownERR064726
MBR7_2UnknownERR064727
MBR7_3UnknownERR064728
MBR7_4UnknownERR064729
MCR4_1UnknownERR064730
MCR4_2UnknownERR064731
MCR4_3UnknownERR064732
MCR4_4UnknownERR064733
MDR6_1UnknownERR064734
MDR6_2UnknownERR064735
MDR6_3UnknownERR064736
MDR6_4UnknownERR064737
MDR7_1UnknownERR064738
MDR7_2UnknownERR064739
MDR7_3UnknownERR064740
MDR7_4UnknownERR064741
CAM2_1UnknownERR064742
CAM2_2UnknownERR064743
CAM2_3UnknownERR064744
CAM2_4UnknownERR064745
CAM4_1UnknownERR064746
CAM4_2UnknownERR064747
CAM4_3UnknownERR064748
CAM4_4UnknownERR064749
CAM6_1UnknownERR064750
CAM6_2UnknownERR064751
CAM6_3UnknownERR064752
CAM6_4UnknownERR064753
CAM8_1UnknownERR064754
CAM8_2UnknownERR064755
CAM8_3UnknownERR064756
CAM8_4UnknownERR064757
CBM4_1UnknownERR064758
CBM4_2UnknownERR064759
CBM4_3UnknownERR064760
CBM4_4UnknownERR064761
CBM7_1UnknownERR064762
CBM7_2UnknownERR064763
CBM7_3UnknownERR064764
CBM7_4UnknownERR064765
CBM12_1UnknownERR064766
CBM12_2UnknownERR064767
CBM12_3UnknownERR064768
CBM12_4UnknownERR064769
CCM3_1UnknownERR064770
CCM3_2UnknownERR064771
CCM3_3UnknownERR064772
CCM3_4UnknownERR064773
CCM6_1UnknownERR064774
CCM6_2UnknownERR064775
CCM6_3UnknownERR064776
CCM6_4UnknownERR064777
CDM2_1UnknownERR064778
CDM2_2UnknownERR064779
CDM2_3UnknownERR064780
CDM2_4UnknownERR064781
CDM4_1UnknownERR064782
CDM4_2UnknownERR064783
CDM4_3UnknownERR064784
CDM4_4UnknownERR064785
CDM6_1UnknownERR064786
CDM6_2UnknownERR064787
CDM6_3UnknownERR064788
CDM6_4UnknownERR064789
CDM8_1UnknownERR064790
CDM8_2UnknownERR064791
CDM8_3UnknownERR064792
CDM8_4UnknownERR064793
CAR4_1UnknownERR064794
CAR4_2UnknownERR064795
CAR4_3UnknownERR064796
CAR4_4UnknownERR064797
CAR6_1UnknownERR064798
CAR6_2UnknownERR064799
CAR6_3UnknownERR064800
CAR6_4UnknownERR064801
CBR4_1UnknownERR064802
CBR4_2UnknownERR064803
CBR4_3UnknownERR064804
CBR4_4UnknownERR064805
CBR6_1UnknownERR064806
CBR6_2UnknownERR064807
CBR6_3UnknownERR064808
CBR6_4UnknownERR064809
CCR3_1UnknownERR064810
CCR3_2UnknownERR064811
CCR3_3UnknownERR064812
CCR3_4UnknownERR064813
CCR6_1UnknownERR064814
CCR6_2UnknownERR064815
CCR6_3UnknownERR064816
CCR6_4UnknownERR064817
CDR2_1UnknownERR064818
CDR2_2UnknownERR064819
CDR2_3UnknownERR064694
CDR2_4UnknownERR064695
CDR4_1UnknownERR064696
CDR4_2UnknownERR064697
CDR4_3UnknownERR064698
CDR4_4UnknownERR064699
CDR6_1UnknownERR064700
CDR6_2UnknownERR064701
CDR6_3UnknownERR064702
CDR6_4UnknownERR064703
CDR8_1UnknownERR064704
CDR8_2UnknownERR064705
CDR8_3UnknownERR064706
CDR8_4UnknownERR064707
AWT10UnknownERR064708
AWT20UnknownERR064709
AWT30UnknownERR064710
AWT40UnknownERR064711
BWT10UnknownERR064712
BWT20UnknownERR064713
BWT30UnknownERR064714
BWT40UnknownERR064715
CWT10UnknownERR064716
CWT20UnknownERR064717
CWT30UnknownERR064718
CWT40UnknownERR064719
DWT10UnknownERR064720
DWT20UnknownERR064721
DWT30UnknownERR064722
DWT40UnknownERR064723
BAN1ESUnknownERR068243

Global Pneumococcal Sequencing (GPS) study I

Sample

Strain

Run Accession

2245STDY5486003UnknownERR311154
2245STDY5486002UnknownERR311153
2245STDY5469488UnknownERR311152
2245STDY5469487UnknownERR311151
2245STDY5469486UnknownERR311150
2245STDY5469485UnknownERR311149
2245STDY5469484UnknownERR311148
2245STDY5469483UnknownERR311147
2245STDY5469482UnknownERR311146
2245STDY5469481UnknownERR311145
2245STDY5469480UnknownERR311144
2245STDY5469479UnknownERR311143
2245STDY5469478UnknownERR311142
2245STDY5469477UnknownERR311141
2245STDY5469476UnknownERR311140
2245STDY5469475UnknownERR311139
2245STDY5469474UnknownERR311138
2245STDY5469473UnknownERR311137
2245STDY5469472UnknownERR311136
2245STDY5469471UnknownERR311135
2245STDY5469470UnknownERR311134
2245STDY5469469UnknownERR311133
2245STDY5469468UnknownERR311132
2245STDY5469467UnknownERR311131
2245STDY5469466UnknownERR311130
2245STDY5469465UnknownERR311129
2245STDY5469464UnknownERR311128
2245STDY5469463UnknownERR311127
2245STDY5469462UnknownERR311126
2245STDY5469461UnknownERR311125
2245STDY5469460UnknownERR311124
2245STDY5469459UnknownERR311123
2245STDY5469458UnknownERR311122
2245STDY5469457UnknownERR311121
2245STDY5469456UnknownERR311120
2245STDY5469455UnknownERR311119
2245STDY5469454UnknownERR311118
2245STDY5469453UnknownERR311117
2245STDY5469452UnknownERR311116
2245STDY5469451UnknownERR311115
2245STDY5469450UnknownERR311114
2245STDY5469449UnknownERR311113
2245STDY5469448UnknownERR311112
2245STDY5469447UnknownERR311111
2245STDY5469446UnknownERR311110
2245STDY5469445UnknownERR311109
2245STDY5469444UnknownERR311108
2245STDY5469443UnknownERR311107
2245STDY5469442UnknownERR311106
2245STDY5469441UnknownERR311105
2245STDY5469440UnknownERR311104
2245STDY5469439UnknownERR311103
2245STDY5469438UnknownERR311102
2245STDY5469437UnknownERR311101
2245STDY5469436UnknownERR311100
2245STDY5469435UnknownERR311099
2245STDY5469434UnknownERR311098
2245STDY5469433UnknownERR311097
2245STDY5469431UnknownERR311096
2245STDY5469430UnknownERR311095
2245STDY5469429UnknownERR311094
2245STDY5469428UnknownERR311093
2245STDY5469427UnknownERR311092
2245STDY5469426UnknownERR311091
2245STDY5469425UnknownERR311090
2245STDY5469424UnknownERR311089
2245STDY5469423UnknownERR311088
2245STDY5469422UnknownERR311087
2245STDY5469421UnknownERR311086
2245STDY5469420UnknownERR311085
2245STDY5469419UnknownERR311084
2245STDY5469418UnknownERR311083
2245STDY5469417UnknownERR311082
2245STDY5469416UnknownERR311081
2245STDY5469415UnknownERR311080
2245STDY5469414UnknownERR311079
2245STDY5469413UnknownERR311078
2245STDY5469412UnknownERR311077
2245STDY5469411UnknownERR311076
2245STDY5469410UnknownERR311075
2245STDY5469409UnknownERR311074
2245STDY5469408UnknownERR311073
2245STDY5469407UnknownERR311072
2245STDY5469406UnknownERR311071
2245STDY5469405UnknownERR311070
2245STDY5469404UnknownERR311069
2245STDY5469403UnknownERR311068
2245STDY5469402UnknownERR311067
2245STDY5469401UnknownERR311066
2245STDY5469400UnknownERR311065
2245STDY5469399UnknownERR311064
2245STDY5469398UnknownERR316935
2245STDY5469397UnknownERR316934
2245STDY5469396UnknownERR316933
2245STDY5469395UnknownERR316932
2245STDY5469394UnknownERR316931
2245STDY5469392UnknownERR316930
2245STDY5469391UnknownERR316929
2245STDY5469390UnknownERR316928
2245STDY5469389UnknownERR316927
2245STDY5469388UnknownERR316926
2245STDY5469387UnknownERR316925
2245STDY5469386UnknownERR316924
2245STDY5469385UnknownERR316923
2245STDY5469384UnknownERR316922
2245STDY5469383UnknownERR316921
2245STDY5469382UnknownERR316920
2245STDY5469381UnknownERR316919
2245STDY5469380UnknownERR316918
2245STDY5469379UnknownERR316917
2245STDY5469376UnknownERR316914
2245STDY5469375UnknownERR316913
2245STDY5469374UnknownERR316912
2245STDY5469373UnknownERR316911
2245STDY5469372UnknownERR316910
2245STDY5469371UnknownERR316909
2245STDY5469367UnknownERR316906
2245STDY5469366UnknownERR316905
2245STDY5469365UnknownERR316904
2245STDY5469364UnknownERR316903
2245STDY5469363UnknownERR316902
2245STDY5469362UnknownERR316901
2245STDY5469359UnknownERR316898
2245STDY5469358UnknownERR316897
2245STDY5469357UnknownERR316896
2245STDY5469356UnknownERR316895
2245STDY5469355UnknownERR316894
2245STDY5469354UnknownERR316893
2245STDY5469353UnknownERR316892
2245STDY5469352UnknownERR316891
2245STDY5469351UnknownERR316890
2245STDY5469349UnknownERR316889
2245STDY5469348UnknownERR316888
2245STDY5469347UnknownERR316887
2245STDY5469346UnknownERR316886
2245STDY5469345UnknownERR316885
2245STDY5469344UnknownERR316884
2245STDY5469343UnknownERR316883
2245STDY5469342UnknownERR316882
2245STDY5469341UnknownERR316881
2245STDY5469340UnknownERR316880
2245STDY5469339UnknownERR316879
2245STDY5469338UnknownERR316878
2245STDY5469337UnknownERR316877
2245STDY5469335UnknownERR316876
2245STDY5469334UnknownERR316875
2245STDY5469333UnknownERR316874
2245STDY5469332UnknownERR316873
2245STDY5469331UnknownERR316872
2245STDY5469330UnknownERR316871
2245STDY5469329UnknownERR316870
2245STDY5469328UnknownERR316869
2245STDY5469327UnknownERR316868
2245STDY5469326UnknownERR316867
2245STDY5469325UnknownERR316866
2245STDY5469324UnknownERR316865
2245STDY5469322UnknownERR316864
2245STDY5469321UnknownERR316863
2245STDY5469320UnknownERR316862
2245STDY5469319UnknownERR316861
2245STDY5469318UnknownERR316860
2245STDY5469317UnknownERR316859
2245STDY5469316UnknownERR316858
2245STDY5469315UnknownERR316857
2245STDY5469314UnknownERR316856
2245STDY5469313UnknownERR316855
2245STDY5469312UnknownERR316854
2245STDY5469311UnknownERR316853
2245STDY5469310UnknownERR316852
2245STDY5469308UnknownERR316851
2245STDY5469307UnknownERR316850
2245STDY5469306UnknownERR316849
2245STDY5469305UnknownERR316848
2245STDY5469304UnknownERR316847
2245STDY5469303UnknownERR316846
2245STDY5469302UnknownERR316845
2245STDY5469301UnknownERR316844
2245STDY5469300UnknownERR316843
2245STDY5469299UnknownERR316842
2245STDY5469298UnknownERR316841
2245STDY5469296UnknownERR316840
2245STDY5469295UnknownERR316839
2245STDY5469294UnknownERR316838
2245STDY5469293UnknownERR316837
2245STDY5469292UnknownERR316836
2245STDY5469291UnknownERR316835
2245STDY5469290UnknownERR316834
2245STDY5469289UnknownERR316833
2245STDY5469288UnknownERR316832
2245STDY5469287UnknownERR316831
2245STDY5469286UnknownERR316830
2245STDY5469285UnknownERR316829
2245STDY5469284UnknownERR316828
2245STDY5469283UnknownERR316827
2245STDY5469282UnknownERR316826
2245STDY5469281UnknownERR316825
2245STDY5469280UnknownERR316824
2245STDY5469279UnknownERR316823
2245STDY5469278UnknownERR316822
2245STDY5469277UnknownERR316821
2245STDY5469276UnknownERR316820
2245STDY5469275UnknownERR316819
2245STDY5469274UnknownERR316818
2245STDY5469273UnknownERR316817
2245STDY5469272UnknownERR316816
2245STDY5469271UnknownERR316815
2245STDY5469270UnknownERR316814
2245STDY5469269UnknownERR316813
2245STDY5469268UnknownERR316812
2245STDY5469267UnknownERR316811
2245STDY5469266UnknownERR316810
2245STDY5469265UnknownERR316809
2245STDY5469264UnknownERR316808
2245STDY5469263UnknownERR316807
2245STDY5469262UnknownERR316806
2245STDY5469261UnknownERR316805
2245STDY5469260UnknownERR316804
2245STDY5469259UnknownERR316803
2245STDY5469258UnknownERR316802
2245STDY5469257Unknown