Salmonella

Salmonella classification is extremely complex; based on DNA-DNA hybridisation results the genus Salmonella is divided into two species: Salmonella enterica and Salmonella bongori. S. enterica is then further divided into six distinct subspecies (I, II, IIIa, IIIb, IV, and VI), based on biochemical differences. The genus Salmonella is further divided by serology into over 2,500 serovars using the Kauffman and White scheme (Popoff and LeMinor 2001). This classification scheme defines the serogroup according to expression of somatic lipopolysaccharide O antigens, and the serovar by expression of flagellar H antigens. Contained within the genus Salmonella are bacterial pathogens able to cause a spectrum of diseases in an array of different hosts and which are responsible for significant morbidity and mortality in both humans and animals. S. enterica subspecies I contains most species that cause disease in warm-blooded animals and includes examples of both promiscuous and host adapted pathotypes. We have generated reference whole genome sequences for the major human pathogenic serotypes of S. enterica and several that are important animal pathogens including S. Typhi, S. Typhimurium, S. Paratyphi A, S. Enteritidis, S. Gallinarum, S. Infantis, S. Hadar and S. Virchow. Within this collection we have defined the genomes of salmonellae able to infect a broad range of hosts including S. Typhimurium which causes self-limiting gastroenteritis in humans and a systemic infection in mice and those that are host restricted including S. Typhi which causes typhoid fever in humans. From these genomes we have shown patterns of evolution that have involved gene acquisition mediated by phage or other mobile genetic elements as well as functional gene loss (see above). We have also shown that some S. enterica serovars such as S. Gallinarum although restricted to chickens has only recently evolved, largely by genome degradation, from a broad host range serovar: S. Enteritidis. To extend our observations and understand the major themes that describe Salmonella evolution we are now sampling more broadly to look at more diverse serotypes and subspecies of S. enterica.

Data Downloads

[Genome Research Limited]

The Wellcome Trust Sanger Insitute is involved in several Salmonella sequencing projects.

Salmonella enterica Typhi Project

The Wellcome Trust Sanger Insitute pathogen genomics group was funded to sequence Salmonella Typhi strain CT18 in collaboration with Prof. Gordon Dougan. This strain is a highly pathogenic, multiple drug resistant strain isolated from a typhoid patient in Cho Quan Hospital, Ho Chi Minh City, Vietnam.

An additional 19 stains were then sequenced using both 454 and Illumina/Solexa rapid sequencing technologies.

Salmonella enterica Paratyphi A Project

The Wellcome Trust Sanger Insitute pathogen genomivs group was funded to sequence Salmonella Paratyphi A strain AKU_12601 in collaboration with Prof. Gordon Dougan.

Salmonella spp. comparative sequencing Project

The Sanger Institute extended its program of comparative Salmonella sequencing to include further serovars of S. enterica in collaboration with Prof. Gordon Dougan, Dr. Paul Barrow of the Institute for Animal Health, Compton, and Dr. Mark Achtman of the Max Planck Institute for Infection Biology, Berlin.

Published Genome Data

Salmonella enterica Typhi

The chromosome sequence is 4,809,037 bp in length with a G+C content of 52.09%, and was generated from 97,000 shotgun reads. There are 4,599 protein-coding genes (including 204 pseudogenes). Both the sequence and annotation have been deposited in the public databases with the accession number AL513382. In addition, there are two plasmids: pHCM1 (218,150 bp, 249 CDS) with the accession number AL513383 and pHCM2 (106,516 bp, 131 CDS) with the accession number AL513384.

Shotgun and assembly data from this project are available from our ftp site.

Salmonella enterica Paratyphi A

The genome is 4,581,797 bp in size and has a GC content of approximately 52.2%. There is also a plasmid of 212,711 bp. The completed chromosomal sequence and annotation is available from EMBL/GenBank with accession number FM200053. Similarly, the plasmid is available from EMBL/GenBank with accession number AM412236.

Shotgun and assembly data from this project are available from our ftp site.


Salmonella spp. comparative sequencing

Nine serovars have thus far been sequenced:

Published Serovars

S. enterica Enteritidis PT4 NCTC 13349

  • Status: Published
  • Assembly: 2 contigs >1kb (2 contigs >2kb); total size 4.686 Mb
  • Shotgun: 68,660 reads totalling 48.605 Mb, theoretical genome coverage of 99.99%
  • EMBL accession no.: AM933172

S. enterica Gallinarum 287/91 NCTC 13346

  • Status: Published
  • Assembly: 2 contigs >1kb (2 contigs >2kb); total size 4.747 Mb
  • Shotgun: 80,266 reads totalling 58.710 Mb, theoretical genome coverage of 99.99%
  • EMBL accession no.: AM933173

Salmonella bongori 12419 ATCC 43975

  • Status: Finished
  • Assembly: 1 contig >1kb (1 contig >2kb); total size 4.460 Mb
  • Shotgun: 75,084 reads totalling 42.054 Mb, theoretical genome coverage of 99.99%
  • EMBL accession no.: FR877557

S. enterica Typhimurium SL1344 NCTC 13347

S. enterica Typhimurium D23580

  • Status: Finished
  • Assembly: 1 contigs >1kb (1 contigs >2kb); total size 4.879 Mb
  • Shotgun: 89,080 reads totalling 56.194 Mb, theoretical genome coverage of 99.99%
  • EMBL accession no.: FN424405
Finished Serovars

S. enterica Hadar

  • Status: Finished
  • Assembly: 3 contigs >1kb (3 contigs >2kb); total size 4.797 Mb
  • Shotgun: 79,998 reads totalling 56.374 Mb, theoretical genome coverage of 99.99%

S. enterica Typhimurium DT104 NCTC 13348

  • Status: Finished
  • Assembly: 2 contigs >1kb (2 contigs >2kb); total size 5.028 Mb
  • Shotgun: 76,534 reads totalling 54.807 Mb, theoretical genome coverage of 99.99%
  • Preliminary annotation (gene prediction) in Artemis format and chromosome sequence in fasta format. Please Note: The preliminary annotation of the chromosome is based on the reverse complement of the original finished genome sequence.
Serovars In Progress

S. enterica Typhimurium DT2

  • Status: Shotgun sequencing
  • Assembly: 23 contigs >1kb (15 contigs >2kb); total size 4.983 Mb
  • Shotgun: 76,073 reads totalling 50.381 Mb, theoretical genome coverage of 99.99%

Shotgun and assembly data from these projects are available from our ftp site.

Studies

Salmonella Paratyphi A diversity (test pool)

Sample

Strain

Run Accession

Test Pool ABL8758, 6911, 6912, 38/71, C1468, ATCC9150/SARB42.ERR003031
SARB42ATCC9150/SARB42ERR003032
ParaA_69116911ERR003033
ParaA_69126912ERR003034
ParaA_Efflux38/71ERR003035
ParaA_8758BL8758ERR003036

Salmonella Bongori genome assembly

Sample

Strain

Run Accession

G1RKI-1300ERR019461
G1RKI-1300ERR019449
G2RKI-1373ERR019462
G2RKI-1373ERR019450
G4RKI-1398ERR019452
G4RKI-1398ERR019472
G8RKI-1786ERR019463
G8RKI-1786ERR019451
S2446907ERR019473
S2446907ERR019453
S2446907ERR019464
SarC12CDC-2703-76ERR019457
G03RKI-1397ERR019458
G06RKI-1593ERR019459
So1285 CTERR019460
So2CEIM 24450ERR019454
S12CEIM 44833ERR019455
S19CEIM 46049ERR019456
G03PIP1900/76ERR019467
S05CEIM 24682ERR019468
S11CEIM 44992ERR019469
S13CEIM 44847ERR019470
S20CEIM 46082ERR019471
S27CEIM 0151ERR019465
S28CEIM 0172ERR019466
S05_2CEIM 24682ERR019474
S11_2CEIM 44992ERR019475
S27_2UnknownERR019476
IP_1IP0224/66ERR019432
IP_2IP1387/73ERR019433
IP_3IP2022/77ERR019434
IP_4IP3846/83ERR019435
IP_5IP4327/84ERR019436
IP_6IP4504/84ERR019437
IP_7IP4770/84ERR019438
IP_8IP4985/85ERR019439
IP_9IP5713/87ERR019441
IP_10IP6794/89ERR019442
IP_11IP7688/91ERR019443
IP_12IP7804/92ERR019444
IP_13IP8031/93ERR019445
IP_14IP8365/95ERR019446
IP_16IP9325/02ERR019448
IP_15SV: 6,14:e,n,z15:-ERR019447

Salmonella Typhi fluoroquinolone resistance study

Sample

Strain

Run Accession

fQR1Salmonella Typhi WT174ERR036341
fQR2Salmonella Typhi WT174ERR036340

Genomic variation in a global set of Salmonella Paratyphi A isolates

Sample

Strain

Run Accession

A1345UnknownERR033911
F846UnknownERR033910
C806UnknownERR033920
BL14275UnknownERR033919
PA2129UnknownERR033917
PA5838UnknownERR033916
PA13869UnknownERR033915
BL13440UnknownERR033914
BL4579UnknownERR033913
PA2664UnknownERR033909
D1985UnknownERR033912
B7697UnknownERR033918
PA181UnknownERR033922
PA11UnknownERR033924
PA5UnknownERR033923
PA40UnknownERR033933
PA83UnknownERR033932
PA56UnknownERR033925
PA105UnknownERR033931
PA123UnknownERR033930
PA31UnknownERR033929
C4672UnknownERR033928
PA3871UnknownERR033927
PA18142UnknownERR033926
PA5652UnknownERR033935
PA68178UnknownERR033937
BL23318UnknownERR033936
BL1893UnknownERR033946
B418UnknownERR033945
D441UnknownERR033942
B964UnknownERR033941
A1338UnknownERR033940
B4173UnknownERR033944
D4075UnknownERR033943
00_6053UnknownERR033974
Banker_Type_1UnknownERR033978
WS0783UnknownERR033979
8-58UnknownERR033980
99_3482UnknownERR033981
A68-37UnknownERR033982
99_7863UnknownERR033983
99_10258UnknownERR033984
02_1960UnknownERR033985
05_3784UnknownERR033975
06_0610UnknownERR033976
99_5900UnknownERR033977
05_0208UnknownERR033987
01_5766UnknownERR033991
Banker_Type_4UnknownERR033992
A52-409UnknownERR033993
04_2589UnknownERR033994
Banker_Type_3UnknownERR033995
05_5304UnknownERR033996
04_6500UnknownERR033997
9-65UnknownERR033998
99_0915UnknownERR033988
98_9652UnknownERR033989
A65-4UnknownERR033990
01_7057UnknownERR034000
04_9176UnknownERR034004
06_7153UnknownERR034005
98_2812UnknownERR034006
99_7158UnknownERR034007
05_6721UnknownERR034008
03_9604UnknownERR034009
Banker_Type_5UnknownERR034010
05_0473UnknownERR034011
A63-3_(_Banker_Type_6)A63-3ERR034001
WS0179UnknownERR034002
06-4418UnknownERR034003
03_7001UnknownERR033948
97_7358UnknownERR033952
97_0613UnknownERR033953
WS0784UnknownERR033954
97_1822UnknownERR033955
00_3513UnknownERR033956
00_6735UnknownERR033957
05_6792UnknownERR033958
99_7252UnknownERR033959
04_0406UnknownERR033949
01_8877UnknownERR033950
97_10913UnknownERR033951
A61-79_(7-58)A61-79ERR033961
A61-81_(9-58)A61-81ERR033965
WS0065UnknownERR033966
J852UnknownERR033967
A61-149_(A50-4)A61-149ERR033968
A61-145_(4-51)A61-145ERR033969
A62-5UnknownERR033970
A63-72UnknownERR033971
WS0785UnknownERR033972
02_8292UnknownERR033962
A_63-73UnknownERR033963
02_1383UnknownERR033964
A52-428UnknownERR034013
J307UnknownERR034015
00_5851UnknownERR034014
00_6712UnknownERR034024
6-60UnknownERR034023
4-56UnknownERR034022
Balt8UnknownERR034021
Brun12UnknownERR034020
A506UnknownERR034019
Reil_90UnknownERR034018
Reil_18UnknownERR034017
A103UnknownERR034016
1-57UnknownERR034026
7-54UnknownERR034028
5-66UnknownERR034027
01_4749UnknownERR034037
00_2046UnknownERR034036
A61-139_(20-52)A61-139ERR034035
A80-82UnknownERR034034
02_4282UnknownERR034033
06_6491UnknownERR034032
A73-2UnknownERR034031
A77-46UnknownERR034030
A80-2UnknownERR034029
06_1246UnknownERR034039
06-5568UnknownERR034041
04_6031UnknownERR034040
01_1852UnknownERR034050
01_8552UnknownERR034049
01_6979UnknownERR034048
17-66UnknownERR034047
WS0063,_WS_0178UnknownERR034046
05_7465UnknownERR034045
05_6761UnknownERR034044
04_3588UnknownERR034043
06-2633UnknownERR034042
A5224UnknownERR034052
A5230UnknownERR034054
A5240UnknownERR034053
A5291UnknownERR034063
A6161UnknownERR034062
A4869UnknownERR034061
A5946UnknownERR034060
A5920UnknownERR034059
A5301UnknownERR034058
A6309UnknownERR034057
A5233UnknownERR034056
A6043UnknownERR034055
PA2WS0785UnknownERR134208
PA2WS0783UnknownERR134209
PA2WS0179UnknownERR134210
PA2WS0784UnknownERR134211
PA2WS0065UnknownERR134212
PA2A103_ParaAUnknownERR134213
PA2A506UnknownERR134214
PA2WS0063UnknownERR134215
PA2J307UnknownERR134216
PA2Reil18UnknownERR134217
PA2J852UnknownERR134218
PA2Reil90UnknownERR134219
PA2Brun12UnknownERR134220
PA2A61-145UnknownERR134221
PA2A52-409UnknownERR134222
PA2A52-428UnknownERR134223
PA27-54UnknownERR134224
PA24-56UnknownERR134225
PA21-57UnknownERR134226
PA2A61-79UnknownERR134227
PA28-58UnknownERR134228
PA26-60UnknownERR134229
PA2A61-139UnknownERR134230
PA2A61-149UnknownERR134231
PA2A61-81UnknownERR134232
PA2A62-5UnknownERR134233
PA2A63-72UnknownERR134234
PA2A63-73UnknownERR134235
PA206_4418UnknownERR134236
PA2A65-4UnknownERR134237
PA29-65UnknownERR134238
PA25-66UnknownERR134239
PA217-66UnknownERR134240
PA2A68-37UnknownERR134241
PA2A73-2UnknownERR134242
PA2A77-46UnknownERR134243
PA2A80-2UnknownERR134244
PA206_0610UnknownERR134245
PA2A80-82UnknownERR134246
PA206_1246UnknownERR134247
PA206_2633UnknownERR134248
PA2BanType1UnknownERR134249
PA2BanType3UnknownERR134250
PA2BanType4UnknownERR134251
PA2BanType5UnknownERR134252
PA2BanType6UnknownERR134253
PA203_7001UnknownERR134254
PA203_9604UnknownERR134255
PA202_4282UnknownERR134160
PA201_7057UnknownERR134161
PA297_1822UnknownERR134162
PA299_10258UnknownERR134163
PA206_5568UnknownERR134164
PA205_7465UnknownERR134165
PA204_2589UnknownERR134166
PA205_6792UnknownERR134167
PA299_7158UnknownERR134168
PA297_10913UnknownERR134169
PA200_3513UnknownERR134170
PA2Balt8UnknownERR134171
PA205_6761UnknownERR134172
PA204_6031UnknownERR134173
PA200_6735UnknownERR134174
PA299_7252UnknownERR134175
PA298_2812UnknownERR134176
PA201_5766UnknownERR134177
PA205_3784UnknownERR134178
PA201_8877UnknownERR134179
PA204_9176UnknownERR134180
PA299_7863UnknownERR134181
PA298_9652UnknownERR134182
PA205_5304UnknownERR134183
PA205_0473UnknownERR134184
PA204_6500UnknownERR134185
PA202_1960UnknownERR134186
PA200_2046UnknownERR134187
PA299_5900UnknownERR134188
PA201_1852UnknownERR134189
PA205_0208UnknownERR134190
PA201_8552UnknownERR134191
PA201_4749UnknownERR134192
PA200_5851UnknownERR134193
PA299_0915UnknownERR134194
PA204_0406UnknownERR134195
PA206_6491UnknownERR134196
PA200_6712UnknownERR134197
PA299_3482UnknownERR134198
PA297_0613UnknownERR134199
PA202_1383UnknownERR134200
PA205_6721UnknownERR134201
PA206_7153UnknownERR134202
PA200_6053UnknownERR134203
PA201_6979UnknownERR134204
PA297_7358UnknownERR134205
PA204_3588UnknownERR134206
PA202_8292UnknownERR134207
PA2A73-2_rptUnknownERR237542
PA29-65_rptUnknownERR237541
PA2A63-73_rptUnknownERR237540
PA2A63-72_rptUnknownERR237539
PA2A61-81_rptUnknownERR237538
PA2WS0784_rptUnknownERR237537

Salmonella Dublin genome assembly

Sample

Strain

Run Accession

SC50S2229ERR038344
BA2071662KERR038343

Group C Salmonella diversity

Sample

Strain

Run Accession

E44E44ERR016870
E48E48ERR016872
E700E700ERR016871
E701E701ERR016881
E279E279ERR016880
E699E699ERR016879
E702E702ERR016878
61761-7ERR016877
66866-8ERR016876
661066-10ERR016875
RKS1234RKS1234ERR016874
E698E698ERR016873
IP33KIP33K / RKS4587 (SARB48)ERR016883
61261-2ERR016885
B27B27ERR016884
CN101CN101ERR016894
66466-4ERR016893
IP288IP2/88 / RKS4594 (SARB49)ERR016892
RKS4585RKS4585ERR016891
RKS4595RKS4595ERR016890
CY1CY1ERR016889
SCB67SC-B67ERR016888
CN182CN182ERR016887
CN231CN231ERR016886
RKS1228RKS1228ERR016896
NVSL6321NVSL6321 (SARB4)ERR016898
48039148-0391ERR016897
RKS1263RKS1263ERR016907
RKS1222RKS1222ERR016906
RKS1241RKS1241ERR016905
RKS1229RKS1229ERR016904
06170606-01706ERR016902
050324105-03241ERR016901
RKS1235RKS1235ERR016900
RKS1252RKS1252ERR016899
RKS1232RKS1232ERR016917
RKS1232RKS1232ERR019736
RKS1232RKS1232ERR027229
RKS1245RKS1245ERR016921
RKS1245RKS1245ERR019740
RKS1245RKS1245ERR027233
734RKI210734RKI210ERR019741
734RKI210734RKI210ERR016922
734RKI210734RKI210ERR027234
RK1211RK1211ERR019742
RK1211RK1211ERR027235
RK1211RK1211ERR016923
RKS1248RKS1248ERR019743
RKS1248RKS1248ERR016924
RKS1248RKS1248ERR027236
960240496-02404ERR016925
960240496-02404ERR019744
960240496-02404ERR027237
CDC332754 CDC3327/54 (SARB6)ERR016926
CDC332754 CDC3327/54 (SARB6)ERR019745
CDC332754 CDC3327/54 (SARB6)ERR027238
RKS1233RKS1233ERR016927
RKS1233RKS1233ERR019746
RKS1233RKS1233ERR027239
RKS1249RKS1249ERR019747
RKS1249RKS1249ERR016928
RKS1249RKS1249ERR027240
8719978719/97ERR016910
8722978722/97ERR016911
8723978723/97ERR016912
38K38KERR016913
RKS1257RKS1257ERR016918
RKS1257RKS1257ERR019737
RKS1257RKS1257ERR027230
49055449-0554ERR019738
49055449-0554ERR027231
49055449-0554ERR016919
CDC27768CDC277/68 (SARB69)ERR016909
RKS1237RKS1237ERR016914
RKS1264RKS1264ERR016915
RKS1253RKS1253ERR019739
RKS1253RKS1253ERR027232
RKS1253RKS1253ERR016920
RKS1256RKS1256ERR016903

Salmonella TraDIS

Sample

Strain

Run Accession

CALF1_11_15_INUnknownERR043108
CALF1_11_15_INUnknownERR043154
CALF1_11_15_INUnknownERR043194
CALF1_11_15_INUnknownERR043234
CALF1_11_15_INUnknownERR043274
CALF3_46_50_IWUnknownERR043134
CALF3_46_50_IWUnknownERR043180
CALF3_46_50_IWUnknownERR043220
CALF3_46_50_IWUnknownERR043260
CALF3_46_50_IWUnknownERR043300
CALF3_51_55_INUnknownERR043109
CALF3_51_55_INUnknownERR043155
CALF3_51_55_INUnknownERR043195
CALF3_51_55_INUnknownERR043235
CALF3_51_55_INUnknownERR043275
CALF3_51_55_IWUnknownERR043116
CALF3_51_55_IWUnknownERR043162
CALF3_51_55_IWUnknownERR043202
CALF3_51_55_IWUnknownERR043242
CALF3_51_55_IWUnknownERR043282
CALF3_6_10_INUnknownERR043105
CALF3_6_10_INUnknownERR043151
CALF3_6_10_INUnknownERR043191
CALF3_6_10_INUnknownERR043231
CALF3_6_10_INUnknownERR043271
CALF3_6_10_IWUnknownERR043107
CALF3_6_10_IWUnknownERR043153
CALF3_6_10_IWUnknownERR043193
CALF3_6_10_IWUnknownERR043233
CALF3_6_10_IWUnknownERR043273
CALF4_26_30_INUnknownERR043110
CALF4_26_30_INUnknownERR043156
CALF4_26_30_INUnknownERR043196
CALF4_26_30_INUnknownERR043236
CALF4_26_30_INUnknownERR043276
CALF4_26_30_IWUnknownERR043120
CALF4_26_30_IWUnknownERR043166
CALF4_26_30_IWUnknownERR043206
CALF4_26_30_IWUnknownERR043246
CALF4_26_30_IWUnknownERR043286
CALF5_56_60_INUnknownERR043125
CALF5_56_60_INUnknownERR043171
CALF5_56_60_INUnknownERR043211
CALF5_56_60_INUnknownERR043251
CALF5_56_60_INUnknownERR043291
CALF5_56_60_IWUnknownERR043135
CALF5_56_60_IWUnknownERR043181
CALF5_56_60_IWUnknownERR043221
CALF5_56_60_IWUnknownERR043261
CALF5_56_60_IWUnknownERR043301
CALF5_61_65_INUnknownERR043126
CALF5_61_65_INUnknownERR043172
CALF5_61_65_INUnknownERR043212
CALF5_61_65_INUnknownERR043252
CALF5_61_65_INUnknownERR043292
CALF1_11_15_IWUnknownERR043117
CALF1_11_15_IWUnknownERR043163
CALF1_11_15_IWUnknownERR043203
CALF1_11_15_IWUnknownERR043243
CALF1_11_15_IWUnknownERR043283
CALF5_61_65_IWUnknownERR043136
CALF5_61_65_IWUnknownERR043182
CALF5_61_65_IWUnknownERR043222
CALF5_61_65_IWUnknownERR043262
CALF5_61_65_IWUnknownERR043302
CALF5_66_70_INUnknownERR043127
CALF5_66_70_INUnknownERR043173
CALF5_66_70_INUnknownERR043213
CALF5_66_70_INUnknownERR043253
CALF5_66_70_INUnknownERR043293
CALF5_66_70_IWUnknownERR043137
CALF5_66_70_IWUnknownERR043183
CALF5_66_70_IWUnknownERR043223
CALF5_66_70_IWUnknownERR043263
CALF5_66_70_IWUnknownERR043303
CALF6_16_20_INUnknownERR043104
CALF6_16_20_INUnknownERR043150
CALF6_16_20_INUnknownERR043190
CALF6_16_20_INUnknownERR043230
CALF6_16_20_INUnknownERR043270
CALF6_16_20_IWUnknownERR043118
CALF6_16_20_IWUnknownERR043164
CALF6_16_20_IWUnknownERR043204
CALF6_16_20_IWUnknownERR043244
CALF6_16_20_IWUnknownERR043284
CALF6_36_40_INUnknownERR043114
CALF6_36_40_INUnknownERR043160
CALF6_36_40_INUnknownERR043200
CALF6_36_40_INUnknownERR043240
CALF6_36_40_INUnknownERR043280
CALF6_36_40_IWUnknownERR043122
CALF6_36_40_IWUnknownERR043168
CALF6_36_40_IWUnknownERR043208
CALF6_36_40_IWUnknownERR043248
CALF6_36_40_IWUnknownERR043288
CALF6_41_45_INUnknownERR043115
CALF6_41_45_INUnknownERR043161
CALF6_41_45_INUnknownERR043201
CALF6_41_45_INUnknownERR043241
CALF6_41_45_INUnknownERR043281
CALF6_41_45_IWUnknownERR043123
CALF6_41_45_IWUnknownERR043169
CALF6_41_45_IWUnknownERR043209
CALF6_41_45_IWUnknownERR043249
CALF6_41_45_IWUnknownERR043289
CALF6_76_80_INUnknownERR043129
CALF6_76_80_INUnknownERR043175
CALF6_76_80_INUnknownERR043215
CALF6_76_80_INUnknownERR043255
CALF6_76_80_INUnknownERR043295
CALF1_21_25_INUnknownERR043112
CALF1_21_25_INUnknownERR043158
CALF1_21_25_INUnknownERR043198
CALF1_21_25_INUnknownERR043238
CALF1_21_25_INUnknownERR043278
CALF6_76_80_IW_UnknownERR043139
CALF6_76_80_IW_UnknownERR043185
CALF6_76_80_IW_UnknownERR043225
CALF6_76_80_IW_UnknownERR043265
CALF6_76_80_IW_UnknownERR043305
CALF6_81_85_INUnknownERR043130
CALF6_81_85_INUnknownERR043176
CALF6_81_85_INUnknownERR043216
CALF6_81_85_INUnknownERR043256
CALF6_81_85_INUnknownERR043296
CALF6_81_85_PPUnknownERR043140
CALF6_81_85_PPUnknownERR043186
CALF6_81_85_PPUnknownERR043226
CALF6_81_85_PPUnknownERR043266
CALF6_81_85_PPUnknownERR043306
CALF7_71_75_INUnknownERR043128
CALF7_71_75_INUnknownERR043174
CALF7_71_75_INUnknownERR043214
CALF7_71_75_INUnknownERR043254
CALF7_71_75_INUnknownERR043294
CALF7_71_75_IWUnknownERR043138
CALF7_71_75_IWUnknownERR043184
CALF7_71_75_IWUnknownERR043224
CALF7_71_75_IWUnknownERR043264
CALF7_71_75_IWUnknownERR043304
CALF7_86_90_INUnknownERR043131
CALF7_86_90_INUnknownERR043177
CALF7_86_90_INUnknownERR043217
CALF7_86_90_INUnknownERR043257
CALF7_86_90_INUnknownERR043297
CALF7_86_90_IWUnknownERR043141
CALF7_86_90_IWUnknownERR043187
CALF7_86_90_IWUnknownERR043227
CALF7_86_90_IWUnknownERR043267
CALF7_86_90_IWUnknownERR043307
CALF7_71_75_IN_RUnknownERR043132
CALF7_71_75_IN_RUnknownERR043178
CALF7_71_75_IN_RUnknownERR043218
CALF7_71_75_IN_RUnknownERR043258
CALF7_71_75_IN_RUnknownERR043298
CALF7_71_75_IW_RUnknownERR043142
CALF7_71_75_IW_RUnknownERR043188
CALF7_71_75_IW_RUnknownERR043228
CALF7_71_75_IW_RUnknownERR043268
CALF7_71_75_IW_RUnknownERR043308
CALF7_86_90_IN_RUnknownERR043133
CALF7_86_90_IN_RUnknownERR043179
CALF7_86_90_IN_RUnknownERR043219
CALF7_86_90_IN_RUnknownERR043259
CALF7_86_90_IN_RUnknownERR043299
CALF1_21_25_IWUnknownERR043119
CALF1_21_25_IWUnknownERR043165
CALF1_21_25_IWUnknownERR043205
CALF1_21_25_IWUnknownERR043245
CALF1_21_25_IWUnknownERR043285
CALF7_86_90_IW_RUnknownERR043143
CALF7_86_90_IW_RUnknownERR043189
CALF7_86_90_IW_RUnknownERR043229
CALF7_86_90_IW_RUnknownERR043269
CALF7_86_90_IW_RUnknownERR043309
chicken_A_1UnknownERR043075
chicken_A_1UnknownERR043090
chicken_A_2UnknownERR043074
chicken_A_2UnknownERR043089
chicken_A_3UnknownERR043076
chicken_A_3UnknownERR043091
chicken_A_4UnknownERR043081
chicken_A_4UnknownERR043096
chicken_A_5UnknownERR043087
chicken_A_5UnknownERR043102
chicken_B_1UnknownERR043079
chicken_B_1UnknownERR043094
chicken_B_2UnknownERR043082
chicken_B_2UnknownERR043097
chicken_B_3UnknownERR043084
chicken_B_3UnknownERR043099
chicken_B_4UnknownERR043077
chicken_B_4UnknownERR043092
CALF2_31_35_INUnknownERR043106
CALF2_31_35_INUnknownERR043152
CALF2_31_35_INUnknownERR043192
CALF2_31_35_INUnknownERR043232
CALF2_31_35_INUnknownERR043272
chicken_B_5UnknownERR043088
chicken_B_5UnknownERR043103
chicken_IN_1UnknownERR043083
chicken_IN_1UnknownERR043098
chicken_IN_2UnknownERR043078
chicken_IN_2UnknownERR043093
chicken_IN_3UnknownERR043080
chicken_IN_3UnknownERR043095
chicken_IN_4UnknownERR043085
chicken_IN_4UnknownERR043100
chicken_IN_5UnknownERR043086
chicken_IN_5UnknownERR043101
PIG_IN_1UnknownERR043068
PIG_IN_1UnknownERR043144
PIG_IN_2UnknownERR043069
PIG_IN_2UnknownERR043145
PIG_IN_3UnknownERR043070
PIG_IN_3UnknownERR043146
PIG_OUT_1UnknownERR043071
PIG_OUT_1UnknownERR043147
CALF2_31_35_IWUnknownERR043121
CALF2_31_35_IWUnknownERR043167
CALF2_31_35_IWUnknownERR043207
CALF2_31_35_IWUnknownERR043247
CALF2_31_35_IWUnknownERR043287
PIG_OUT_2UnknownERR043072
PIG_OUT_2UnknownERR043148
PIG_OUT_3UnknownERR043073
PIG_OUT_3UnknownERR043149
CALF3_1_5_INUnknownERR043113
CALF3_1_5_INUnknownERR043159
CALF3_1_5_INUnknownERR043199
CALF3_1_5_INUnknownERR043239
CALF3_1_5_INUnknownERR043279
CALF3_1_5_IWUnknownERR043111
CALF3_1_5_IWUnknownERR043157
CALF3_1_5_IWUnknownERR043197
CALF3_1_5_IWUnknownERR043237
CALF3_1_5_IWUnknownERR043277
CALF3_46_50_INUnknownERR043124
CALF3_46_50_INUnknownERR043170
CALF3_46_50_INUnknownERR043210
CALF3_46_50_INUnknownERR043250
CALF3_46_50_INUnknownERR043290

Phylogeography of Salmonella Typhimurium

Sample

Strain

Run Accession

SGSC2187rptSGSC2187ERR028651
4752rpt4752ERR028652
M3071rptM3071ERR028653
998697rpt998697ERR028654
971797rpt971797ERR028655
CO95rptCO95ERR028656
62336rpt62336ERR028657
CO107rptCO107ERR028658
CO119rptCO119ERR028643
M1598923rptM1598923ERR028644
142DRCrpt142DRCERR028645
7576Urpt7576UERR028646
La88rptLa88ERR028647
Tha9rptTha9ERR028648
ST4_74ST4_74ERR028649
Q134F8Q134F8ERR028244
Q134F4Q134F4ERR028248
Q303F1Q303F1ERR028249
Q175F4THQ175F4THERR028250
Q23F2BMQ23F2BMERR028251
Q23F5Q23F5ERR028252
Q23AQ23AERR028253
Q213F3BMQ213F3BMERR028254
Q217F3Q217F3ERR028255
Q303F3Q303F3ERR028245
Q213F1BMQ213F1BMERR028246
Q217AQ217AERR028247
Q213F2Q213F2ERR028257
Q23F1Q23F1ERR028261
Q435AQ435AERR028262
Q435F1_AQ435F1_AERR028263
Q435F1_BQ435F1_BERR028264
Q435F2Q435F2ERR028265
Q431F1BMQ431F1BMERR028266
Q255F1BMQ255F1BMERR028267
Q255F1UQ255F1UERR028268
Q71F5UQ71F5UERR028258
Q71F3SQ71F3SERR028259
Q71F3UQ71F3UERR028260
Q285F1BMQ285F1BMERR028270
Q285F3BMQ285F3BMERR028273
Q285F4UQ285F4UERR028274
Q340F1BMQ340F1BMERR028275
Q340F4BMQ340F4BMERR028276
S04696-09S04696-09ERR028277
10084-199510084-1995ERR028278
100419-1995100419-1995ERR028279
S00454-09S00454-09ERR028280
S00705-09S00705-09ERR028271
3193-19953193-1995ERR028272
S05738-08S05738-08ERR028282
7828-19957828-1995ERR028285
7830-19957830-1995ERR028286
7302-1997302-199ERR028287
S00914-05S00914-05ERR028288
4582-19954582-1995ERR028289
12005-199512005-1995ERR028290
3203-19973203-1997ERR028291
10984-199610984-1996ERR028292
547-2001547-2001ERR028283
10902-199610902-1996ERR028284
1713-19981713-1998ERR028294
200707-08200707-08ERR028297
S05380-08S05380-08ERR028298
S08300-02S08300-02ERR028299
4284-19954284-1995ERR028300
4179-20014179-2001ERR028301
8935-19958935-1995ERR028302
6940-19986940-1998ERR028303
S06221-07S06221-07ERR028304
1164-19951164-1995ERR028295
818-1998818-1998ERR028296
3299-19973299-1997ERR028306
2610-19982610-1998ERR028309
6353-19976353-1997ERR028310
8721-19978721-1997ERR028311
1008-19951008-1995ERR028312
1402-20001402-2000ERR028313
SO3188-03SO3188-03ERR028314
SO9207-07SO9207-07ERR028315
8380-19968380-1996ERR028316
5544-19975544-1997ERR028307
11020-199611020-1996ERR028308
9115-19959115-1995ERR028631
388-1998388-1998ERR028634
SO8313-02SO8313-02ERR028635
SO4454-08SO4454-08ERR028636
SO6356-04SO6356-04ERR028637
SO1491-06SO1491-06ERR028638
SO6281-04SO6281-04ERR028639
SO4178-09SO4178-09ERR028640
8767-19988767-1998ERR028641
SO4744-08SO4744-08ERR028632
7396-19987396-1998ERR028633
SO3433-05SO3433-05ERR029213
SO5081-04SO5081-04ERR029216
S00060-07S00060-07ERR029217
SO9304-02SO9304-02ERR029218
6164-19976164-1997ERR029219
S09313-03S09313-03ERR029220
2087-19972087-1997ERR029221
S07676-03S07676-03ERR029222
S05451-08S05451-08ERR029223
SO5416-06SO5416-06ERR029214
5465-19985465-1998ERR029215
10258-199710258-1997ERR029225
2036-20002036-2000ERR029228
12342-199612342-1996ERR029229
4300-20014300-2001ERR029230
SO1960-05SO1960-05ERR029231
S04199-08S04199-08ERR029232
S05968-02S05968-02ERR029233
S07292-07S07292-07ERR029234
S04782-03S04782-03ERR029235
SR11-WTSR11-WTERR029226
SR11-12SR11-12ERR029227
A018A018ERR023766
A082A082ERR023770
A357A357ERR023771
A665A665ERR023772
A680A680ERR023773
A3800A3800ERR023774
A4283A4283ERR023775
A4447A4447ERR023776
C2110C2110ERR023777
C2167C2167ERR023767
C2364C2364ERR023768
A13198A13198ERR023769
A13212A13212ERR023779
D11578D11578ERR023783
A16083A16083ERR023784
D14916D14916ERR023785
D15040D15040ERR023786
A24906A24906ERR023787
A24910A24910ERR023788
A32751A32751ERR023789
A32773A32773ERR023790
D23769aD23769ERR023780
A130A130ERR023781
A38589A38589ERR023782
A38596A38596ERR023792
C13184C13184ERR023796
A39051A39051ERR023797
A39129A39129ERR023798
A39155A39155ERR023799
P78P78ERR023800
P51P51ERR023803
J3J3ERR023793
J17J17ERR023794
J27J27ERR023795
J20J20ERR023805
I3I3ERR023809
I32I32ERR023810
I45I45ERR023811
I7I7ERR023812
SGSC1411SGSC 1411ERR023813
SGSC1412SGSC 1412ERR023814
SGSC1413SGSC 1413ERR023815
SGSC1414SGSC 1414ERR023816
SGSC1415SGSC 1415ERR023806
SGSC1416SGSC 1416ERR023807
SGSC1417SGSC 1417ERR023808
SGSC1418SGSC 1418ERR023818
SGSC2269SGSC 2269ERR023822
SGSC1420SGSC 1420ERR023823
SGSC1421SGSC 1421ERR023824
SGSC1422SGSC 1422ERR023825
SGSC2181SGSC 2181ERR023826
SGSC2182SGSC 2182ERR023827
SGSC2183SGSC 2183ERR023828
SGSC2184SGSC 2184ERR023829
SGSC2185SGSC 2185ERR023819
SGSC2186SGSC 2186ERR023820
SGSC2187SGSC 2187ERR023821
SGSC2188SGSC 2188ERR023831
SGSC2189SGSC 2189ERR023835
SGSC2190SGSC 2190ERR023836
SGSC2191SGSC 2191ERR023837
SGSC2192SGSC 2192ERR023838
M3071M30-71ERR023839
R1796R1796ERR023840
PVIPVIERR023841
99187099-1870ERR023842
9939799-397ERR023832
214100-2141ERR023833
475200-4752ERR023834
152301-523ERR024361
2415502-4155ERR024365
2478802-4788ERR024366
3125303-1253ERR024367
3365903-3659ERR024368
97179797-1797ERR024369
97563697-5636ERR024370
971021597-10215ERR024371
9865298-652ERR024372
98628998-6289ERR024362
99118499-1184ERR024363
99869799-8697ERR024364
67200-672ERR024374
95100-951ERR024378
151401-514ERR024379
5240805-2408ERR024380
5439705-4397ERR024381
6233606-2336ERR024382
6231806-2318ERR024383
8822288-222ERR024384
92279992-2799ERR024385
96789696-7896ERR024375
9960999-609ERR024376
CO95CO95ERR024377
CO96CO96ERR024387
CO97CO97ERR024391
CO98CO98ERR024392
CO99CO99ERR024393
CO100CO100ERR024394
CO101CO101ERR024395
CO102CO102ERR024396
CO103 CO103ERR024397
CO104CO104ERR024398
CO105CO105ERR024388
CO106CO106ERR024389
CO107CO107ERR024390
CO108CO108ERR024400
CO109CO109ERR024404
CO110CO110ERR024405
CO111CO111ERR024406
CO112CO112ERR024407
CO113CO113ERR024408
CO114CO114ERR024409
CO115CO115ERR024410
CO116CO116ERR024411
CO117CO117ERR024401
CO118CO118ERR024402
CO119CO119ERR024403
C0120C0120ERR024413
CO121CO121ERR024417
CO122CO122ERR024418
M2817587M281758.7ERR024419
M2907772M290777.2ERR024420
M1564429M156442.9ERR024421
M1560153M156015.3ERR024422
M1776464M177646.4ERR024423
M1605206M160520.6ERR024424
M1174516M117451.6ERR024414
M1438312M143831.2ERR024415
M1598923M159892.3ERR024416
M1553285M155328.5ERR024765
M1111568M111156.8ERR024769
M1253289M125328.9ERR024770
PO409PO409ERR024771
PO609PO609ERR024772
PO1124PO1124ERR024773
PO1140PO1140ERR024774
PO1276PO1276ERR024775
I308I308ERR024776
I4DRCI4DRCERR024766
100DRC100DRCERR024767
142DRC142DRCERR024768
198U198UERR024778
228DRC228DRCERR024782
265DRC265DRCERR024783
958U958UERR024784
1905U1905UERR024785
5897U5897UERR024786
6079U6079UERR024787
415DRC415DRCERR024788
254DRC254DRCERR024789
868U868UERR024779
6325U6325UERR024780
7576U7576UERR024781
334U334UERR024791
146U146UERR024795
270DRC270DRCERR024796
373DRC373DRCERR024797
269DRC269DRCERR024798
2815013MZ281501.3MZERR024799
2815310MZ281531.0MZERR024800
1175849MZ117584.9MZERR024801
La76La76ERR024802
La81La81ERR024792
La85La85ERR024793
La88La88ERR024794
La89La89ERR024804
La98La98ERR024808
La137La137ERR024809
La140La140ERR024810
Tha2Tha2ERR024811
Tha3Tha3ERR024812
Tha4Tha4ERR024813
Tha5Tha5ERR024814
Tha6Tha6ERR024815
Tha7Tha7ERR024805
Tha8Tha8ERR024806
Tha9Tha9ERR024807
Tha10Tha10ERR024752
Tha11Tha11ERR024756
Tha12Tha12ERR024757
Tha13Tha13ERR024758
Tha14Tha14ERR024759
Tha15Tha15ERR024760
Tha16Tha16ERR024761
Tha17Tha17ERR024762
Tha18Tha18ERR024763
Tha19Tha19ERR024753
Tha70Tha70ERR024754
Tha71Tha71ERR024755
P62P62ERR023801
P73P73ERR023802
R1R1ERR044697
R12R12ERR044698
R21R21ERR044699
R27R27ERR044700
R28R28ERR044701
R32R32ERR044702
R33R33ERR044703
R39R39ERR044704
R40R40ERR044705
R43R43ERR044706
R44R44ERR044707
R46R46ERR044708
R47R47ERR044709
M143M143ERR044710
R62R62ERR044711
M231M231ERR044712
STM3246_94STM3246/94ERR044713
R15R15ERR044714
GA3844RBGA3844RBERR044715
GA3534RBGA3534RBERR044716
48245607225MEXSALYUHS03-31ERR044717
69300078064H2549ERR044718
R48R48ERR044719
H2526H2526ERR044720
R56R56ERR044721
R51R51ERR044722
96371895311MEXSALMIPUS03-21ERR044723
M295M295ERR044724
8423715622990 TIR-9ERR044725
88918891ERR044726
88928892ERR044727
A54560A54560ERR044728
A54285A54285ERR044729
SGSC1423SGSC1423ERR044730
SGSC1424SGSC1424ERR044731
SGSC1425SGSC1425ERR044732
SGSC1426SGSC1426ERR044733
SGSC1427SGSC1427ERR044734
SGSC1428SGSC1428ERR044735
SGSC1429SGSC1429ERR044736
SGSC1430SGSC1430ERR044737
SGSC1431SGSC1431ERR044738
SGSC2194SGSC2194ERR044739
SGSC2195SGSC2195ERR044740
SGSC2196SGSC2196ERR044741
SGSC2197SGSC2197ERR044742
SGSC2198SGSC2198ERR044743
SGSC2199SGSC2199ERR044744

Salmonella nitra genome sequencing

Sample

Strain

Run Accession

Snitra01JT1409ERR018882

Mali iNTS - Stanleyville

Sample

Strain

Run Accession

MLP7P7ERR019095

Salmonella Typhimurium DT104 isolates

Sample

Strain

Run Accession

613sV119947188ERR026055
613sV219901626ERR026059
613sV319924155ERR026060
613sV419921478ERR026061
613sV519910118ERR026062
613sV619941366ERR026063
613sV2319930556ERR026064
613sV720000253ERR026065
613sV819941861ERR026066
613sV919960590ERR026056
613sV1019965336ERR026057
613sV1119974757ERR026058
613sV1220000252ERR026016
613sV1319947328.0ERR026020
613sV1419944626ERR026021
613sV1519965515ERR026022
613sV1620030672ERR026023
613sV1719955854ERR026024
613sV2419951835ERR026025
613sV1919941305ERR026026
613sV2019913832ERR026027
613sV2119914280ERR026017
613sV2219943177ERR026018
613sV2519931931ERR026019
613sV2819940538ERR026029
613sV2919940575ERR026033
613sV3019941121ERR026034
613sV3119941125ERR026035
613sV3219943433ERR026036
613sV3319960919ERR026037
613sV3419943225ERR026038
613sV3519943438ERR026039
613sV3619950942ERR026040
613sV3719965593ERR026030
613sV3819984292ERR026031
613sV4119946170ERR026032
613sV4219946738ERR026146
613sV4319961640ERR026150
613sV4419961747ERR026151
613sV4519950685ERR026152
613sV4619952505ERR026153
613sV4720042753ERR026154
613sV2719934139ERR026155
613sV4819954719ERR026156
613sV4919993677ERR026157
613sV5019973158ERR026147
613sV5120011956ERR026148
613sV5219960661ERR026149
613sV5319960663ERR026042
613sV5819971599ERR026046
613sV5919981442ERR026047
613sV6019981443ERR026048
613sV6119983951ERR026049
613sV6219991902ERR026050
613sV6319992741ERR026051
613sV6520031116ERR026052
613sV6619981157ERR026053
613sV6719975975ERR026043
613sH119913036ERR026044
613sH219925318ERR026045
613sH319903364ERR026068
613sH419922230ERR026072
613sH519922227ERR026073
613sH619965152ERR026074
613sH719992071ERR026075
613sH819973501ERR026076
613sV2619933788ERR026077
613sH919943160ERR026078
613sH1019966020ERR026079
613sH1119947292ERR026069
613sH1220003053ERR026070
613sH1319991990ERR026071
613sH1419942767ERR026081
613sH1520032611ERR026085
613sH1619965846ERR026086
613sH1719975772ERR026087
613sH1819914270ERR026088
613sH2419974769ERR026089
613sV3919944280ERR026090
613sH1919954656ERR026091
613sH2019920511ERR026092
613sH2119941095ERR026082
613sH2219931348ERR026083
613sH2319954002ERR026084
613sH2619943437ERR028466
613sH2719982641ERR028470
613sH2820002056ERR028471
613sH2920041737ERR028472
613sH3019980562ERR028473
613sH3119911356ERR028474
613sV4019965216ERR028475
613sH3219947306ERR028476
613sH3319933536ERR028477
613sH3419980780ERR028467
613sH3519952677ERR028468
613sH3620032641ERR028469
613sH3719943646ERR026107
613sH3819946564ERR026111
613sH3919955181ERR026112
613sH4019960114ERR026113
613sH4119953451ERR026114
613sH4219942421ERR026115
613sH4319960309ERR026116
613sH4419971434ERR026117
613sH4519975504ERR026118
613sH4619932484ERR026108
613sH4719983062ERR026109
613sH4819973908ERR026110
613sH4919982205ERR026120
613sH5019970646ERR026124
613sH5119903377ERR026125
613sH5220021627ERR026126
613sH5319910486ERR026127
613sH5419961869ERR026128
613sV5419961858ERR026129
613sH5519914504ERR026130
613sH5619915142ERR026131
613sH5719934184ERR026121
613sH5819943327ERR026122
613sH5919962486ERR026123
613sH6019970881ERR026094
613sH6119945968ERR026098
613sH6219953022ERR026099
613sH6319960725ERR026100
613sH6419960726ERR026101
613sH6519961150ERR026102
613sV5519970172ERR026103
613sH6620021611ERR026104
613sH6719961914ERR026105
613sH6820011968.0ERR026095
613sH6919962439ERR026096
613sH7019963881ERR026097
613sH7119965243ERR026133
613sH7220013941ERR026137
613sH7319966256ERR026138
613sH7419970661ERR026139
613sH7519981062ERR026140
613sH7619990031ERR026141
613sV5619970173ERR026142
613sH7719990579ERR026143
613sH7819990754ERR026144
613sH7919991224ERR026134
613sH8019991794ERR026135
613sH8119991796ERR026136
613sH8220011024ERR026159
613sH8320011298ERR026163
613sH8620030815ERR026164
613sH8820022717ERR026165
613sH8920022716ERR026166
613sH9020031323ERR026167
613sV5719970842ERR026168
613sH9120040863ERR026169
613sH9219973505ERR026170
613sH9319956152ERR026160
613sH9419963811ERR026161
613sH9519942745ERR026162
613sH138613sH138ERR170619
613sH137613sH137ERR170618
613sH136613sH136ERR170617
613sH135613sH135ERR170616
613sH134613sH134ERR170615
613sH133613sH133ERR170614
613sH132613sH132ERR170613
613sH131613sH131ERR170612
613sH130613sH130ERR170611
613sH129613sH129ERR170610
613sH128613sH128ERR170609
613sH127613sH127ERR170608
613sH126613sH126ERR170607
613sH125613sH125ERR170606
613sH124613sH124ERR170605
613sH123613sH123ERR170604
613sH122613sH122ERR170603
613sH121613sH121ERR170602
613sH120613sH120ERR170601
613sH119613sH119ERR170600
613sH118613sH118ERR170599
613sH117613sH117ERR170598
613sH116613sH116ERR170597
613sH115613sH115ERR170596
613sH114613sH114ERR170595
613sH113613sH113ERR170594
613sH112613sH112ERR170593
613sH111613sH111ERR170592
613sH110613sH110ERR170591
613sH109613sH109ERR170590
613sH108613sH108ERR170589
613sH107613sH107ERR170588
613sH106613sH106ERR170587
613sH105613sH105ERR170586
613sH99613sH99ERR170580
613sH98613sH98ERR170579
613sH97613sH97ERR170578
613sH96613sH96ERR170577
613sH144613sH144ERR170672
613sH143613sH143ERR170671
613sV114613sV114ERR170670
613sV113613sV113ERR170669
613sV112613sV112ERR170668
613sV111613sV111ERR170667
613sV110613sV110ERR170666
613sV109613sV109ERR170665
613sV108613sV108ERR170664
613sV107613sV107ERR170663
613sV106613sV106ERR170662
613sV105613sV105ERR170661
613sV104613sV104ERR170660
613sV103613sV103ERR170659
613sV102613sV102ERR170658
613sV101613sV101ERR170657
613sV100613sV100ERR170656
613sV99613sV99ERR170655
613sV98613sV98ERR170654
613sV97613sV97ERR170653
613sV96613sV96ERR170652
613sV95613sV95ERR170651
613sV94613sV94ERR170650
613sV93613sV93ERR170649
613sV92613sV92ERR170648
613sV91613sV91ERR170647
613sV90613sV90ERR170646
613sV89613sV89ERR170645
613sV88613sV88ERR170644
613sV87613sV87ERR170643
613sV86613sV86ERR170642
613sV85613sV85ERR170641
613sV84613sV84ERR170640
613sV83613sV83ERR170639
613sV82613sV82ERR170638
613sV81613sV81ERR170637
613sV80613sV80ERR170636
613sV79613sV79ERR170635
613sV78613sV78ERR170634
613sV77613sV77ERR170633
613sV76613sV76ERR170632
613sV75613sV75ERR170631
613sV74613sV74ERR170630
613sV73613sV73ERR170629
613sV72613sV72ERR170628
613sV71613sV71ERR170627
613sV70613sV70ERR170626
613sV69613sV69ERR170625
613sV68613sV68ERR170624
613sH142613sH142ERR170623
613sH141613sH141ERR170622
613sH140613sH140ERR170621
613sH139613sH139ERR170620
613sH104613sH104ERR170585
613sH103613sH103ERR170584
613sH102613sH102ERR170583
613sH101613sH101ERR170582
613sH100613sH100ERR170581
S1760_03DT104ERR232524
S1341_96DT104ERR232523
S7937_02DT104ERR232522
P506684DT104ERR232521
H05_252_0256DT104ERR232520
P252245DT104ERR232519
P377794DT104ERR232518
P480114DT104ERR232517
P282503DT104ERR232516
H04_212_0222DT104ERR232515
PS22401DT104ERR232514
H04_286_0471_C016DT104ERR232513
S25_03DT104ERR232512
S549_03DT104ERR232511
S885_03DT104ERR232510
S1063_04DT104ERR232509
S8762_02DT104ERR232508
P528906DT104ERR232507
P358631DT104ERR232506
H05_302_0351DT104ERR232505
S3413_04DT104ERR232504
S5250_02DT104ERR232503
S3170_03DT104ERR232502
S2892_04DT104ERR232501

Salmonella Typhi and Salmonella Paratyphi A Strains

Sample

Strain

Run Accession

GB5GB5ERR028492
GB18GB18ERR028496
GB26GB26ERR028497
GB44GB44ERR028498
GB63GB63ERR028499
GB58GB58ERR028500
GB71GB71ERR028501
GB113GB113ERR028502
GB193GB193ERR028503
GB214GB214ERR028493
GB224GB224ERR028494
GB245GB245ERR028495
GB266GB266ERR028505
GB276GB276ERR028509
GB280GB280ERR028510
GB281GB281ERR028511
GB335GB335ERR028512
GB336GB336ERR028513
GB368GB368ERR028514
GB493GB493ERR028515
GB580GB580ERR028516
GB624GB624ERR028506
GB625GB625ERR028507
GB637GB637ERR028508
GB640GB640ERR026895
GB672GB672ERR026899
GBO1GB3GBO1GB 3ERR026900
GBO1GB4GBO1GB 4ERR026901
GBO1GB20GBO1GB20ERR026902
GBO1GB31GBO1GB 31ERR026903
GBO1GB75GBO1GB 75ERR026904
GBO1GB76GBO1GB 76ERR026905
GBO1GB125GBO1GB 125ERR026906
GBO1GB169GBO1GB 169ERR026896
GB199GB199ERR026897
GB726GB726ERR026898
IB5335UnknownERR108648
IB5336UnknownERR108649
IB5337UnknownERR108650
IB5338UnknownERR108651
IB5339UnknownERR108652
IB5340UnknownERR108653
IB5341UnknownERR108654
IB5342UnknownERR108655
IB5343UnknownERR108656
IB5344UnknownERR108657
IB5345UnknownERR108658
IB5347UnknownERR108659
IB5348UnknownERR108660
IB5349UnknownERR108661
IB5350UnknownERR108662
IB5351UnknownERR108663
IB5352UnknownERR108664
IB5353UnknownERR108665
IB5354UnknownERR108666
IB5355UnknownERR108667
IB5356UnknownERR108668
IB5357UnknownERR108669
IB5358UnknownERR108670
IB5359UnknownERR108671
IB5360UnknownERR108672
IB5361UnknownERR108673
IB5363UnknownERR108674
IB5365UnknownERR108675
IB5366UnknownERR108676
IB5367UnknownERR108677
IB5368UnknownERR108678
IB5369UnknownERR108679
IB5370UnknownERR108680
IB5371UnknownERR108681
IB5372UnknownERR108682
IB5373UnknownERR108683
IB5374UnknownERR108684
IB5375UnknownERR108685
IB5376UnknownERR108686
IB5378UnknownERR108687
IB5379UnknownERR108688
IB5380UnknownERR108689
IB5381UnknownERR108690
IB5382UnknownERR108691
IB5383UnknownERR108692
IB5384UnknownERR108693
IB5385UnknownERR108694
IB5386UnknownERR108695
SPA102SPA102ERR175703
SPA100SPA100ERR175702
SPA098SPA098ERR175701
SPA096SPA096ERR175700
SPA086SPA086ERR175699
SPA085SPA085ERR175698
SPA082SPA082ERR175697
SPA079SPA079ERR175696
SPA078SPA078ERR175695
SPA077SPA077ERR175694
SPA076SPA076ERR175693
SPA072SPA072ERR175692
SPA064SPA064ERR175691
SPA063SPA063ERR175690
SPA062SPA062ERR175689
SPA058SPA058ERR175688
SPA057SPA057ERR175687
SPA056SPA056ERR175686
SPA055SPA055ERR175685
SPA053SPA053ERR175684
SPA052SPA052ERR175683
SPA048SPA048ERR175682
SPA047SPA047ERR175681
SPA046SPA046ERR175680
SPA042SPA042ERR175679
SPA038SPA038ERR175678
SPA037SPA037ERR175677
SPA034SPA034ERR175676
SPA033SPA033ERR175675
SPA032SPA032ERR175674
SPA030SPA030ERR175673
SPA029SPA029ERR175672
SPA028SPA028ERR175671
SPA026SPA026ERR175670
SPA025SPA025ERR175669
SPA024SPA024ERR175668
SPA023SPA023ERR175667
SPA021SPA021ERR175666
SPA020SPA020ERR175665
SPA019SPA019ERR175664
SPA014SPA014ERR175660
SPA010SPA010ERR175659
SPA09SPA09ERR175658
SPA07SPA07ERR175657
SPA06SPA06ERR175656
SPA02SPA02ERR175655
SPA018SPA018ERR175663
SPA017SPA017ERR175662
SPA015SPA015ERR175661

Salmonella Paratyphi A global variation

Sample

Strain

Run Accession

ParaA0001WS0784ERR028897
ParaA0001WS0784ERR030055
ParaA000250 473ERR028901
ParaA000250 473ERR030059
ParaA0003A61-81ERR028902
ParaA0003A61-81ERR030060
ParaA000404 9176ERR028903
ParaA000404 9176ERR030061
ParaA0005WS0783ERR028904
ParaA0005WS0783ERR030062
ParaA000699 5900ERR028905
ParaA000699 5900ERR030063
ParaA0007A80-82ERR028906
ParaA0007A80-82ERR030064
ParaA000802 1960ERR028907
ParaA000802 1960ERR030065
ParaA0009Reil18ERR028908
ParaA0009Reil18ERR030066
ParaA001004 0406ERR028898
ParaA001004 0406ERR030056
ParaA0011Reil90ERR028899
ParaA0011Reil90ERR030057
ParaA001201 1852ERR028900
ParaA001201 1852ERR030058
ParaA0013WS0179ERR028910
ParaA0013WS0179ERR030068
ParaA001405 0208ERR028914
ParaA001405 0208ERR030072
ParaA0015A77-46ERR028915
ParaA0015A77-46ERR030073
ParaA001697 1822ERR028916
ParaA001697 1822ERR030074
ParaA001704 6500ERR028917
ParaA001704 6500ERR030075
ParaA001899 07158ERR028918
ParaA001899 07158ERR030076
ParaA0019J852ERR028919
ParaA0019J852ERR030077
ParaA002006 1246ERR028920
ParaA002006 1246ERR030078
ParaA00216-60ERR028921
ParaA00216-60ERR030079
ParaA002299 10258ERR028911
ParaA002299 10258ERR030069
ParaA002317-66ERR028912
ParaA002317-66ERR030070
ParaA002401 4749ERR028913
ParaA002401 4749ERR030071
ParaA002506 4418ERR028923
ParaA002506 4418ERR030081
ParaA002605 3784ERR028927
ParaA002605 3784ERR030085
ParaA00274-56ERR028928
ParaA00274-56ERR030086
ParaA002897 7358ERR028929
ParaA002897 7358ERR030087
ParaA0029WS0063ERR028930
ParaA0029WS0063ERR030088
ParaA003099 7252ERR028931
ParaA003099 7252ERR030089
ParaA0031A63-72ERR028932
ParaA0031A63-72ERR030090
ParaA003202 4282ERR028933
ParaA003202 4282ERR030091
ParaA003306 6491ERR028934
ParaA003306 6491ERR030092
ParaA003400 2046ERR028924
ParaA003400 2046ERR030082
ParaA003506 7153ERR028925
ParaA003506 7153ERR030083
ParaA003601 5766ERR028926
ParaA003601 5766ERR030084
ParaA0037A52 428ERR028936
ParaA0037A52 428ERR030094
ParaA003805 6721ERR028940
ParaA003805 6721ERR030098
ParaA003961 145ERR028941
ParaA003961 145ERR030099
ParaA004097 10913ERR028942
ParaA004097 10913ERR030100
ParaA0041A506ERR028943
ParaA0041A506ERR030101
ParaA004299 7863ERR028944
ParaA004299 7863ERR030102
ParaA0043Balt8ERR028945
ParaA0043Balt8ERR030103
ParaA004404 3588ERR028946
ParaA004404 3588ERR030104
ParaA0045A62-5ERR028947
ParaA0045A62-5ERR030105
ParaA004600 3513ERR028937
ParaA004600 3513ERR030095
ParaA0047Brun12ERR028938
ParaA0047Brun12ERR030096
ParaA004801 6979ERR028939
ParaA004801 6979ERR030097
ParaA0049A61-79ERR028949
ParaA0049A61-79ERR030107
ParaA005005 6792ERR028953
ParaA005005 6792ERR030111
ParaA00515-66ERR028954
ParaA00515-66ERR030112
ParaA005298 2812ERR028955
ParaA005298 2812ERR030113
ParaA0053A73-2ERR028956
ParaA0053A73-2ERR030114
ParaA005497 0613ERR028957
ParaA005497 0613ERR030115
ParaA0055A68-37ERR028958
ParaA0055A68-37ERR030116
ParaA005602 8292ERR028959
ParaA005602 8292ERR030117
ParaA0057Banker type1ERR028960
ParaA0057Banker type1ERR030118
ParaA005800 5815ERR028950
ParaA005800 5815ERR030108
ParaA0059A52-409ERR028951
ParaA0059A52-409ERR030109
ParaA006001 7057ERR028952
ParaA006001 7057ERR030110
ParaA0061A65-4ERR028962
ParaA0061A65-4ERR030042
ParaA006205 5304ERR028966
ParaA006205 5304ERR030046
ParaA00639-65ERR028967
ParaA00639-65ERR030047
ParaA006498 9652ERR028968
ParaA006498 9652ERR030048
ParaA00657-54ERR028969
ParaA00657-54ERR030049
ParaA006601 8552ERR028970
ParaA006601 8552ERR030050
ParaA0067Banker type3ERR028971
ParaA0067Banker type3ERR030051
ParaA006803 7001ERR028972
ParaA006803 7001ERR030052
ParaA0069Banker Type6ERR028973
ParaA0069Banker Type6ERR030053
ParaA007000 6053ERR028963
ParaA007000 6053ERR030043
ParaA0071A103(ParaA)ERR028964
ParaA0071A103(ParaA)ERR030044
ParaA007206 2633ERR028965
ParaA007206 2633ERR030045
ParaA00731-57ERR028975
ParaA00731-57ERR030120
ParaA007405 6761ERR028979
ParaA007405 6761ERR030124
ParaA007506 0610ERR028980
ParaA007506 0610ERR030125
ParaA007699 0915ERR028981
ParaA007699 0915ERR030126
ParaA0077A61-149ERR028982
ParaA0077A61-149ERR030127
ParaA007801 8877ERR028983
ParaA007801 8877ERR030128
ParaA0079A63-73ERR028984
ParaA0079A63-73ERR030129
ParaA008003 9604ERR028985
ParaA008003 9604ERR030130
ParaA0081WS0065ERR028986
ParaA0081WS0065ERR030131
ParaA008200 6712ERR028976
ParaA008200 6712ERR030121
ParaA0083A80-2ERR028977
ParaA0083A80-2ERR030122
ParaA008406 5568ERR028978
ParaA008406 5568ERR030123
ParaA0085Banker Type4ERR028988
ParaA0085Banker Type4ERR030133
ParaA008605 7465ERR028992
ParaA008605 7465ERR030137
ParaA0087WS0785ERR028993
ParaA0087WS0785ERR030138
ParaA008899 3482ERR028994
ParaA008899 3482ERR030139
ParaA00898-58ERR028995
ParaA00898-58ERR030140
ParaA009002 1383ERR028996
ParaA009002 1383ERR030141
ParaA0091J307ERR028997
ParaA0091J307ERR030142
ParaA009204 2589ERR028998
ParaA009204 2589ERR030143
ParaA0093A61-139ERR028999
ParaA0093A61-139ERR030144
ParaA009400 6735ERR028989
ParaA009400 6735ERR030134
ParaA0095Banker type5ERR028990
ParaA0095Banker type5ERR030135
ParaA009604 6031ERR028991
ParaA009604 6031ERR030136
ParaA0097JW-105ERR658242
ParaA0098JW-11ERR658243
ParaA0099JW-123ERR658244
ParaA0100JW-138-69ERR658245
ParaA0101JW-181ERR658246
ParaA0102JW-181-42ERR658247
ParaA0103JW-2129ERR658248
ParaA0104JW-2664ERR658249
ParaA0105JW-31ERR658250
ParaA0106JW-38-71ERR658251
ParaA0107JW-40ERR658281
ParaA0108JW-5ERR658282
ParaA0109JW-56ERR658283
ParaA0110JW-56-52ERR658284
ParaA0111JW-58-38ERR658285
ParaA0112JW-68-178ERR658286
ParaA0113JW-83ERR658287
ParaA0114JW-A1338ERR658288
ParaA0115JW-A1345ERR658289
ParaA0116JW-A4869ERR658290
ParaA0117JW-A5224ERR658252
ParaA0118JW-A5230ERR658253
ParaA0119JW-A5233ERR658254
ParaA0120JW-A5240ERR658255
ParaA0121JW-A5291ERR658256
ParaA0122JW-A5301ERR658257
ParaA0123JW-A5920ERR658258
ParaA0124JW-A5946ERR658259
ParaA0125JW-A6043ERR658260
ParaA0126JW-A6161ERR658261
ParaA0127JW-A6309ERR658271
ParaA0128JW-B1357ERR658272
ParaA0129JW-B4173ERR658273
ParaA0130JW-B418ERR658274
ParaA0131JW-B7697ERR658275
ParaA0132JW-B943ERR658276
ParaA0133JW-B964ERR658277
ParaA0134JW-BL13440ERR658278
ParaA0135JW-BL14275ERR658279
ParaA0136JW-BL1893ERR658280
ParaA0137JW-BL23318ERR658262
ParaA0138JW-BL4579ERR658263
ParaA0139JW-C4672ERR658264
ParaA0140JW-C806ERR658265
ParaA0141JW-D1985ERR658266
ParaA0142JW-D4075ERR658267
ParaA0143JW-D441ERR658268
ParaA0144JW-F846ERR658269
ParaA0145LH_M276ERR658270

Salmonella enterica variation

Sample

Strain

Run Accession

Salm00023205ERR029004
Salm000302-04627ERR029005
Salm000500-02036ERR029007
Salm000602-03361ERR029008
Salm000908721532688ERR029011
Salm001046304394256ERR029002
Salm001182273931642ERR029003
Salm0012LH_2443ERR029013
Salm0013LH_M261ERR029015
Salm0014LH_M62ERR029016
Salm0015LH_M105ERR029017
Salm0016LH_M175ERR029018
Salm0017LH_M55ERR029019
Salm0018LH_M129ERR029020
Salm0021LH_M200ERR029014
Salm0022LH_M263ERR029024
Salm0024WS0036ERR029028
Salm0025ref061ERR029029
Salm0026ref064ERR029030
Salm002798-03021ERR029031
Salm0028LH_M302ERR029032
Salm0029LH_M3ERR029033
Salm003028561582948ERR029034
Salm003101-01676ERR029025
Salm0032MZ1294ERR029026
Salm003302-02216ERR029036
Salm0034MZ0523ERR029039
Salm003526683769324ERR029040
Salm0036LH_M148ERR029041
Salm0039LH_M50ERR029044
Salm0040WS0051ERR029045
Salm004198-04046ERR029046
Salm004253043669426ERR029037
Salm004306292060423ERR029038
Salm004401-00493-2ERR424894
Salm0045SARB14_FB_1ERR424895
Salm004603-03818ERR424896
Salm004799-02017-2ERR424897
Salm0048MZ0743ERR424898
Salm005005-00489ERR424900
Salm0051SARB52_FBERR424901
Salm005201-03117ERR424902
Salm0053MZ0630ERR424903
Salm005499-02302ERR424904
Salm005502-02908-2ERR424905
Salm005600-03508ERR424906
Salm0057LH_M158ERR424907
Salm0058LH_M139ERR424908
Salm0059LH_M296ERR424909
Salm0060LH_M243ERR424910
Salm0061SARB13_FBERR424911
Salm0062SARB18_FBERR424912
Salm0063SARB19_FBERR424913
Salm0064SARB21_FBERR424914
Salm000738650885331ERR029009
Salm0049852KERR424899
Salm000193KERR029001
Salm000498-00123ERR029006
Salm000877994994990ERR029010
Salm0019LH_H2559ERR029021
Salm0020LH_M284ERR029022
Salm0023LH_M251ERR029027
Salm0037LH_M247ERR029042
Salm0038LH_M36ERR029043

Salmonella enterica diversity

Sample

Strain

Run Accession

CAN000107-0223ERR037431
CAN000207-0512ERR037435
CAN000307-2054ERR037436
CAN000407-2350ERR037437
CAN000507-2615ERR037438
CAN000607-2888ERR037439
CAN000707-2967ERR037440
CAN000807-4078ERR037441
CAN000907-4260ERR037442
CAN001007-4703ERR037432
CAN001107-5132ERR037433
CAN001207-5134ERR037434
CAN001307-5249ERR037443
CAN001407-5250ERR037447
CAN001507-6199ERR037448
CAN001607-6896ERR037449
CAN001707-7809ERR037450
CAN001807-7810ERR037451
CAN001908-0547ERR037452
CAN002008-0548ERR037453
CAN002108-0811ERR037454
CAN002208-1080ERR037444
CAN002308-1082ERR037445
CAN002408-1083ERR037446
CAN002508-1084ERR037455
CAN002608-1547ERR037459
CAN002708-1989ERR037460
CAN002808-1992ERR037461
CAN002908-1993ERR037462
CAN003008-2179ERR037463
CAN003108-2646ERR037464
CAN003208-2647ERR037465
CAN003308-2753ERR037466
CAN003408-2811ERR037456
CAN003508-2985ERR037457
CAN003608-3412ERR037458
CAN003708-3576ERR038633
CAN003808-4042ERR038634
CAN003908-4799ERR038635
CAN004008-5088ERR038636
CAN004108-5089ERR038637
CAN004208-5184ERR038638
CAN004308-6881ERR038639
CAN004408-7030ERR038640
CAN004508-7591ERR038641
CAN004608-8306ERR038642
CAN004708-8651ERR038643
CAN004809-0439ERR038644
CAN004909-0564ERR038645
CAN005009-0746ERR038646
CAN005109-0775ERR038647
CAN005209-1036ERR038648
CAN005309-1127ERR038649
CAN005409-1409ERR038650
CAN005509-2029ERR038651
CAN005609-2455ERR038652
CAN005709-2814ERR038653
CAN005809-3137ERR038654
CAN005909-3634ERR038655
CAN006009-3954ERR038656
CAN008506-4498ERR029048
CAN008606-5583ERR029051
CAN008703-0349ERR029052
CAN008803-2106ERR029053
CAN008903-3205ERR029054
CAN009003-3795ERR029055
CAN009103-4953ERR029056
CAN009203-6429ERR029057
CAN009303-6485ERR029058
CAN009404-0296ERR029049
CAN009504-5855ERR029050
CAN0096F11109ERR045301
CAN0097F11650ERR045302
CAN0098F10231ERR045303
CAN009905-3126ERR045304
CAN010008-4900ERR045305
CAN010103-7893ERR045306
CAN010203-3950ERR045307
CAN010305-5684ERR045308
CAN010403-0651ERR045309
CAN010503-6441ERR045310
CAN010603-0184ERR045311
CAN010706-0234ERR045312
CAN010809-1522ERR045313
CAN010905-2323ERR045314
CAN011006-1227ERR045315
CAN011103-5185ERR045316
CAN011207-7503ERR045317
CAN011306-3303ERR045318
CAN011406-6673ERR045319
CAN011507-7502ERR045320
CAN011603-2764ERR045321
CAN011703-2103ERR045322
CAN011808-4892ERR045323
CAN011905-2319ERR045324
CAN012005-4932ERR045325
CAN012105-2983ERR045326
CAN012206-3719ERR045327
CAN012306-2800ERR045328
CAN012405-5449ERR045329
CAN012503-4538ERR045330
CAN012605-1200ERR045331
CAN012704-7107ERR045332
CAN012803-2762ERR045333
CAN012906-0997ERR045334
CAN013007-5332ERR045335
CAN013103-1744ERR045336
CAN013205-2987ERR045337
CAN013303-1122ERR045338
CAN013406-6213ERR045339
CAN013506-7151ERR045340
CAN013607-1023ERR045341
CAN013707-4530ERR045342
CAN013808-3107ERR045343
CAN013908-3411ERR045344
CAN014008-5185ERR045345
CAN014108-5608ERR045346
CAN014208-5609ERR045347
CAN014308-8443ERR045348
CAN0171a09:MF9139ERR161906
CAN0170a09:0008951RERR161905
CAN0169a09:0009241RERR161904
CAN0168a09:MF0017524RERR161903
CAN0166a08:MF0017271RERR161902
CAN0165a08:MF0017711RERR161901
CAN0164a08:MF0018567ERR161900
CAN0163a09:MF0002762RERR161899
CAN0162a09:MF0001707RERR161898
CAN0161a09:MF0008371RERR161897
CAN0160a09:MF0001194RERR161896
CAN0159a09:MF0009245RERR161895
CAN0158a09:MF0009695RERR161894
CAN0157a09:MF0010690RERR161893
CAN0156a09:MF17524RERR161892
CAN0155a09:MF0012014RERR161891
CAN0151a06-0820ERR161890
CAN0150a06-0715ERR161889
CAN0149a06-0346ERR161888
CAN0148a04-6087ERR161887
CAN0147a09-2815ERR161886
CAN0146a09-1650ERR161885
CAN0145a09-1568ERR161884
CAN0144a08-8447ERR161883
CAN0084a06-4190ERR161882
CAN0083a06-4189ERR161881
CAN0082a06-4102ERR161880
CAN0081a06-3989ERR161879
CAN0080a06-3854ERR161878
CAN0079a06-3853ERR161877
CAN0078a06-3784ERR161876
CAN0077a06-3385ERR161875
CAN0076a06-2407ERR161874
CAN0075a06-2274ERR161873
CAN0074a06-1908ERR161872
CAN0073a06-1551ERR161871
CAN0072a06-1549ERR161870
CAN0071a06-1157ERR161869
CAN0070a06-0402ERR161868
CAN0069a06-0215ERR161867
CAN0068a05-5991ERR161866
CAN0067a05-4871ERR161865
CAN0066a09-6650ERR161864
CAN0065a09-6602ERR161863
CAN0064a09-6279ERR161862
CAN0063a09-6190ERR161861
CAN0062a09-4240ERR161860
CAN0061a09-4082ERR161859
CAN0167a09:MF17642ERR160998
CAN0154a04-4497ERR160997
CAN0153a04-1206ERR160996
CAN0152a04-1085ERR160995
CAN0217S-1806ERR160994
CAN0216S-1640ERR160993
CAN0215S-1242ERR160992
CAN0214S-1807ERR160991
CAN0213S-0658ERR160990
CAN0212S-0749ERR160989
CAN0211S-0435ERR160988
CAN0210S-0936ERR160987
CAN0209S-0516ERR160986
CAN0208S-0444ERR160985
CAN0207S-0657ERR160984
CAN0206S-0497ERR160983
CAN0205S-0378ERR160982
CAN020408-5487ERR160981
CAN020303-8500ERR160980
CAN020209-6600ERR160979
CAN020106-1360ERR160978
CAN020007-0005ERR160977
CAN019906-3723ERR160976
CAN019804-2998ERR160975
CAN019706-1905ERR160974
CAN019608-8589ERR160973
CAN019507-6634ERR160972
CAN019407-1373ERR160971
CAN019308-8590ERR160970
CAN019206-6334ERR160969
CAN019108-8109ERR160968
CAN019007-6078ERR160967
CAN018905-4790ERR160966
CAN018806-1346ERR160965
CAN018707-6081ERR160964
CAN018603-2480ERR160963
CAN018501-00493-2ERR160962
CAN0184SARB18-FBERR160961
CAN0183a08:MF0013950ERR160960
CAN0182a08:MF0010405ERR160959
CAN0181a08:MF0010337RERR160958
CAN0180a08:MF0010724RERR160957
CAN0179a08:MF0016603ERR160956
CAN0178a08:MF0017270RERR160955
CAN0177a08:MF0011083ERR160954
CAN0176a08:0012690RERR160953
CAN0175a09:MF0013408RERR160952
CAN0174a09:MF17767ERR160951
CAN0173a09:MF0014001RERR160950
CAN0172a09:MF0016552RERR160949

Salmonella Typhi and Salmonella Paratyphi A Strains II

Sample

Strain

Run Accession

DM035DM035ERR119722
DM038DM038ERR119723
DM042DM042ERR119724
DM049DM049ERR119725
DM056DM056ERR119726
DM067DM067ERR119727
DM072DM072ERR119728
DM080DM080ERR119729
DM082DM082ERR119730
DM089DM089ERR119731
DM098DM098ERR119732
DM093DM093ERR119733
DM111DM111ERR119746
DM116DM116ERR119747
DM118DM118ERR119748
DM158DM158ERR119749
DM175DM175ERR119750
DM178DM178ERR119751
DM183DM183ERR119752
DM188DM188ERR119753
DM186DM186ERR119754
DM192DM192ERR119755
DM211DM211ERR119756
DM210DM210ERR119757
DM219DM219ERR119734
DM233DM233ERR119735
DM247DM247ERR119736
DM254DM254ERR119737
DM256DM256ERR119738
DM253DM253ERR119739
DM265DM265ERR119740
DM274DM274ERR119741
DM227DM227ERR119742
DM295DM295ERR119743
DM305DM305ERR119744
DM313DM313ERR119745
DM323DM323ERR119758
DM320DM320ERR119759
DM329DM329ERR119760
DM356DM356ERR119761
DM358DM358ERR119762
DM363DM363ERR119763
DM390DM390ERR119764
DM387DM387ERR119765
ED021ED021ERR119766
ED027ED027ERR119767
ED034ED034ERR119768
ED037ED037ERR119769
ED039ED039ERR119770
ED043ED043ERR119771
ED044ED044ERR119772
ED053ED053ERR119773
ED051ED051ERR119774
ED065ED065ERR119775
ED068ED068ERR119776
ED070ED070ERR119777
ED071ED071ERR119778
ED079ED079ERR119779
ED074ED074ERR119780
ED099ED099ERR119781
ED035ED035ERR119782
ED161ED161ERR119783
ED164ED164ERR119784
ED168ED168ERR119785
ED179ED179ERR119786
ED182ED182ERR119787
ED191ED191ERR119788
ED192ED192ERR119789
ED194ED194ERR119790
ED193ED193ERR119791
ED199ED199ERR119792
ED261ED261ERR119793
ED262ED262ERR119794
ED267ED267ERR119795
ED275ED275ERR119796
ED272ED272ERR119797
ED274ED274ERR119798
ED286ED286ERR119799
ED293ED293ERR119800
ED320ED320ERR119801
ED317ED317ERR119802
ED318ED318ERR119803
ED321ED321ERR119804
ED327ED327ERR119805
ED330ED330ERR119828
ED335ED335ERR119829
ED340ED340ERR119830
ED338ED338ERR119831
ED345ED345ERR119832
ED347ED347ERR119833
ED348ED348ERR119834
ED356ED356ERR119835
ED361ED361ERR119836
ED362ED362ERR119837
ED366ED366ERR119838
ED363ED363ERR119839
ED364ED364ERR119840
ED375ED375ERR119841
ED383ED383ERR119842
ED408ED408ERR119843
ED416ED416ERR119844
ED417ED417ERR119845
ED432ED432ERR119846
ED443ED443ERR119847
ED446ED446ERR119848
ED459ED459ERR119849
ED494ED494ERR119850
ED503ED503ERR119851
ED523ED523ERR119806
ED579ED579ERR119807
ED624ED624ERR119808
ED632ED632ERR119809
ED646ED646ERR119810
ED805ED805ERR119811
ED849ED849ERR119812
TY018TY018ERR119813
TY035TY035ERR119814
TY037TY037ERR119815
TY051TY051ERR119816
TY072TY072ERR119817
TY075TY075ERR119818
TY103TY103ERR119819
TY090TY090ERR119820
TY098TY098ERR119821
TY101TY101ERR119822
TY104TY104ERR119823
TY112TY112ERR119824
TY122TY122ERR119825
ED260ED260ERR119826
DM377DM377ERR119827

Blautia producta genome comparisons

Sample

Strain

Run Accession

46082A2146082A21ERR033900
46082E2146082E21ERR033901

Characterisation of the phylogenetic relationship of Salmonella enterica subsp. enterica (Subspecies I) Serotype 4,[5],12:i:-

Sample

Strain

Run Accession

1749s0110177-1993ERR038757
1749s0210246-1993ERR038758
1749s0310382-1995ERR038759
1749s041013-1997ERR038760
1749s0511671-1996ERR038761
1749s064061-1997ERR038762
1749s07S03512-08ERR038763
1749s08S00130-09ERR038764
1749s09S02412-09ERR038765
1749s10L01001-10ERR038766
1749s11S01569-10ERR038767
1749s12S04797-08ERR038768
1749s131334-1997ERR038769
1749s143951-1997ERR038770
1749s151731-1999ERR038771
1749s165937-2000ERR038772
1749s176887-2000ERR038773
1749s182798-2001ERR038774
1749s193543-2002ERR038775
1749s20L01176-08ERR038776
1749s21L01189-08ERR038777
1749s22L00938-09ERR038778
1749s23L00446-08ERR038779
1749s24L00178-09ERR038780
1749s25S00814-10ERR038781
1749s26S03445-08ERR038782
1749s27S07300-05ERR038783
1749s28S00065-06ERR038784
1749s29S01364-10ERR038785
1749s304824-10ERR038786
1749s314797-10ERR038787
1749s32S5712-08ERR038788
1749s33S5828-08ERR038789
1749s34L1101-10ERR038790
1749s35S4812-10ERR038791
1749s36S4489-10ERR038792
1749s37S3659-10ERR039363
1749s38S00250-07ERR039364
1749s39S00176-09ERR039365
1749s405102-1999ERR039366
1749s41L00961-04ERR039367
1749s42L01730-06ERR039368
1749s43S02909-08ERR039369
1749s44S05893-09ERR039370
1749s45S05894-09ERR039371
1749s46S03113-10ERR039372
1749s47S04698-09ERR039373
1749s48L00759-09ERR039374
1HH07 016 0417ERR062874
2HH07 166 0082ERR062875
3HH07 182 0182ERR062876
4HH07 230 0280ERR062877
5HH07 234 0179ERR062878
6HH07 246 0338ERR062879
7HH07 276 0382ERR062880
8HH07 338 0264ERR062881
9HH07 394 0379ERR062882
10HH07 246 0339ERR062883
11HH07 362 0321ERR062884
12HH07 474 0455ERR062885
13HH090260055ERR062886
14HH100120548ERR062887
15HH100420171ERR062888
16HH100760028ERR062889
17HH100800267ERR062890
18HH101020440ERR062891
19HH101560198ERR062892
20HH102100163ERR062893
21HH102120667ERR062894
22HH102140400ERR062895
23HH10234093302ERR062896
24HH102540233ERR062897
25HH103260370ERR056898
26HH103700509ERR056899
27HH103720606ERR056900
28HH103920583ERR056901
29HH1041406001ERR056902
30HH104240405ERR056903
31HH104680513ERR056904
32HH104920557ERR056905
33HH105000301ERR056906
34HH105100366ERR056907
35HH105260826ERR056908
36HH105280433ERR056909
4It242/2ERR056921
6It45/16ERR056922
7It242/2ERR056923
8It3046/11ERR056924
9It1365/1ERR056925
10It2841/2ERR056926
11It692/26ERR056927
12It2117/2ERR056928
13It629/2ERR056929
14It2223/2ERR056930
15It2200/2ERR056931
16It2448/2ERR056932
17It1038/2ERR056933
18It496/10ERR056934
19It1115/25ERR056935
23It1686/1ERR056939
24It1790/1ERR056940
25It2617/20ERR056941
26It1948/2ERR056942
44HS668/03ERR056917
45HS680/10ERR056918
46HS4483/04ERR056919
47HS3174/10ERR056920
21It4650/1ERR056937
27It1693/1ERR056943
71E94640445ERR056944
73E94140627ERR056945
37HBR 3660ERR056910
38HBR 3483ERR056911
39H09CEB7133SALERR056912
40HBR 1781ERR056913
41HS5564/09ERR056914
42HS6943/03ERR056915
43HS789/05ERR056916
20It4648/1ERR056936
22It6366/1ERR056938

MICROME single carbon source testing by TraDIS

Sample

Strain

Run Accession

TbaseASL1344ERR305503
TbaseBSL1344ERR305504
A1TglucSL1344ERR305505
A2TglucSL1344ERR305506
B1TglucSL1344ERR305507
B2TglucSL1344ERR305508
A1TmucicSL1344ERR305499
A2TmucicSL1344ERR305500
B1TmucicSL1344ERR305501
B2TmucicSL1344ERR305502
EbaseAP125109ERR305510
EbaseBP125109ERR305511
A1EglucP125109ERR305495
A2EglucP125109ERR305496
B1EglucP125109ERR305497
B2EglucP125109ERR305498
A1EmucicP125109ERR305491
A2EmucicP125109ERR305492
B1EmucicP125109ERR305493
B2EmucicP125109ERR305494
Gall425k287/91ERR305509
EnEZun2UnknownERR410275
EnEZun1UnknownERR410274
TyEZun2UnknownERR410273
TyEZun1UnknownERR410272
EntC2maltoseP125109ERR433222
EntC1maltoseP125109ERR433221
TymC2melibioseSL1344ERR433220
TymC1melibioseSL1344ERR433219
TymC2maltotrioseSL1344ERR433218
TymC1maltotrioseSL1344ERR433217
TymC2trehaloseSL1344ERR433216
TymC1trehaloseSL1344ERR433215
EntC2sorbitolP125109ERR425337
EntC1sorbitolP125109ERR425336
EntC2gluconateP125109ERR425335
EntC1gluconateP125109ERR425334
EntC2mannoseP125109ERR425333
EntC1mannoseP125109ERR425332
TymC2sorbitolSL1344ERR433236
TymC1sorbitolSL1344ERR433235
TymC2gluconateSL1344ERR433234
TymC1gluconateSL1344ERR433233
TymC2mannoseSL1344ERR433232
TymC1mannoseSL1344ERR433231
TymC2maltoseSL1344ERR433230
TymC1maltoseSL1344ERR433229
EntC2melibioseP125109ERR433228
EntC1mellbioseP125109ERR433227
EntC2maltotrioseP125109ERR433226
EntC1maltotrioseP125109ERR433225
EntC2trehaloseP125109ERR433224
EntC1trehaloseP125109ERR433223

Atypical Salmonella Enteritidis persistent infection

Sample

Strain

Run Accession

KUMAR105: MB7981ERR048502
KUMAR208: MB3817ERR048503
KUMAR308: MB15580ERR048504
KUMAR408: MB16115ERR048505
KUMAR508:MF0010464RERR048506
KUMAR608:MF0010697RERR048507
KUMAR708:MF0011943RERR048508
KUMAR808:MF0016491RERR048509
KUMAR908:MF0018323RERR048510
KUMAR1009:MF0000575RERR048511
KUMAR1109:MF0005148RERR048512
KUMAR1209:MF0010306RERR048513
KUMAR1309:MF0011240RERR048514
KUMAR1409:MF0012323SERR048515
KUMAR1509:MF0018182RERR048516
KUMAR1609:MF0019755RERR048517
KUMAR1709:MF0021482RERR048518
KUMAR1809:MF0017735RERR048519
KUMAR19MF17654ERR048520
KUMAR20MF19031ERR048521
KUMAR21B20062ERR048522
KUMAR22MB20421ERR048523
KUMAR23MB760ERR048524
KUMAR24MB4386ERR048525

Genomic sequencing of Salmonella Java and Paratyphi B

Sample

Strain

Run Accession

HPA_604UnknownERR126110
HPA_508UnknownERR126109
HPA_364UnknownERR126108
HPA_256UnknownERR126107
HPA_168UnknownERR126106
24_PB-JUnknownERR129870
23_PB-JUnknownERR129869
21_PB-JUnknownERR129868
20_PB-JUnknownERR129867
19_PB-JUnknownERR129866
18_PB-JUnknownERR129865
16_PB-JUnknownERR129864
15_PB-JUnknownERR129863
13_PB-JUnknownERR129862
11_PB-JUnknownERR129861
1_PB-JUnknownERR129852
H113700398UnknownERR129897
H104240488UnknownERR129896
H104060548UnknownERR129895
H103520475UnknownERR129894
H102320465UnknownERR129893
H093720426UnknownERR129892
H093680197UnknownERR129891
44_PB-JUnknownERR129890
43_PB-JUnknownERR129889
42_PB-JUnknownERR129888
41_PB-JUnknownERR129887
40_PB-JUnknownERR129886
39_PB-JUnknownERR129885
38_PB-JUnknownERR129884
37_PB-JUnknownERR129883
36_PB-JUnknownERR129882
35_PB-JUnknownERR129881
34_PB-JUnknownERR129880
33_PB-JUnknownERR129879
32_PB-JUnknownERR129878
31_PB-JUnknownERR129877
30_PB-JUnknownERR129876
29_PB-JUnknownERR129875
28_PB-JUnknownERR129874
27_PB-JUnknownERR129873
26_PB-JUnknownERR129872
25_PB-JUnknownERR129871
10_PB-JUnknownERR129860
9_PB-JUnknownERR129859
8_PB-JUnknownERR129858
7_PB-JUnknownERR129857
5_PB-JUnknownERR129856
4_PB-JUnknownERR129855
3_PB-JUnknownERR129854
2_PB-JUnknownERR129853
2096STDY5459745UnknownERR278744
2096STDY5459744UnknownERR278743
2096STDY5459743UnknownERR278742
2096STDY5459742UnknownERR278741
2096STDY5459741UnknownERR278740
2096STDY5459740UnknownERR278739
2096STDY5459739UnknownERR278738
2096STDY5459738UnknownERR278737
2096STDY5459737UnknownERR278736
2096STDY5459736UnknownERR278735
2096STDY5459735UnknownERR278734
2096STDY5459734UnknownERR278733
2096STDY5459733UnknownERR278732
2096STDY5459732UnknownERR278731
2096STDY5459731UnknownERR278730
2096STDY5459730UnknownERR278729
2096STDY5459729UnknownERR278728
2096STDY5459728UnknownERR278727
2096STDY5459727UnknownERR278726
2096STDY5459726UnknownERR278725
2096STDY5459725UnknownERR278724
2096STDY5459724UnknownERR278723
2096STDY5459723UnknownERR278722
2096STDY5459722UnknownERR278721
2096STDY5459721UnknownERR278720
2096STDY5459720UnknownERR278719
2096STDY5459719UnknownERR278718
2096STDY5459718UnknownERR278717
2096STDY5459717UnknownERR278716
2096STDY5459716UnknownERR278715
2096STDY5459715UnknownERR278714
2096STDY5459714UnknownERR278713
2096STDY5459713UnknownERR278712
2096STDY5459712UnknownERR278711
2096STDY5459711UnknownERR278710
2096STDY5459710UnknownERR278709
2096STDY5459709UnknownERR278708
2096STDY5459708UnknownERR278707
2096STDY5459707UnknownERR278706
2096STDY5459706UnknownERR278705
2096STDY5459705UnknownERR278704
2096STDY5459704UnknownERR278703
2096STDY5459703UnknownERR278702
2096STDY5459702UnknownERR278701
2096STDY5459701UnknownERR278700
2096STDY5459700UnknownERR278699
2096STDY5459699UnknownERR278698
2096STDY5459698UnknownERR278697
1997_PB44dT+ERR403712
2009_2080dT+ERR403711
2009_832dT+ERR403710
2010_10841dT+ERR403709
2010_14600dT+ERR403708
2010_01382dT+ERR403707
2010_00939dT+ERR403706
2010_02245dT+ERR403705
2010_13583dT+ERR403704
2010_13556dT+ERR403703
2010_01627dT+ERR403702
2010_12222dT+ERR403701
2010_14896dT+ERR403700
2010_12407dT+ERR403699
2010_02257dT+ERR403698
2096STDY5663376ST86ERR460168
2096STDY5663375ST86ERR460167
2096STDY5663374ST86ERR460166
2096STDY5663373ST86ERR460165
2096STDY5663372ST86ERR460164
2096STDY5663371ST86ERR460163
2096STDY5663370ST86ERR460162
2096STDY5663369ST86ERR460161
2096STDY5663368ST86ERR460160
2096STDY5663367ST86ERR460159
2096STDY5663366ST86ERR460158
2096STDY5663365ST86ERR460157
2096STDY5663364ST86ERR460156
2096STDY5663363ST86ERR460155
2096STDY5663362ST772ERR460154
2096STDY5663361ST734ERR460153
2096STDY5663360ST733ERR460152
2096STDY5663359ST43ERR460151
2096STDY5663358ST43ERR460150
2096STDY5663357ST43ERR460149
2096STDY5663356ST43ERR460148
2096STDY5663355ST43ERR460147
2096STDY5663354ST43ERR460146
2096STDY5663353ST43ERR460145
2096STDY5663352ST43ERR460144
2096STDY5663351ST42ERR460143
2096STDY5663350ST42ERR460142
2096STDY5663349ST42ERR460141
2096STDY5663348ST42ERR460140
2096STDY5663347ST307ERR460139
2096STDY5663345ST307ERR460138
2096STDY5663344ST28ERR460137
2096STDY5663342ST28ERR460136
2096STDY5663341ST267ERR460135
2096STDY5663340ST266ERR460134
2096STDY5663339ST265ERR460133
2096STDY5663338ST264ERR460132
2096STDY5663335ST127ERR460131
2096STDY5663333ST110ERR460130
2096STDY5663332ST110ERR460129
2096STDY5663328ST110ERR460128
2096STDY5663327ST110ERR460127
2096STDY5663346ST307ERR467035
2096STDY5663343ST28ERR467034
2096STDY5663337ST149ERR467033
2096STDY5663336ST149ERR467032
2096STDY5663334ST127ERR467031
2096STDY5663331ST110ERR467030
2096STDY5663330ST110ERR467029
2096STDY5663329ST110ERR467028
2096STDY5663326ST110ERR494991

TraDIS on Salmonella carbon source

Sample

Strain

Run Accession

TymurC2TAceSL1344ERR233546
TymurC2TAceSL1344ERR233618
TymurC2TAceSL1344ERR233690
TymurC2TAceSL1344ERR233762
TymurC2TAceSL1344ERR233834
TymurC2TAceSL1344ERR233906
TymurC2TAceSL1344ERR233978
TymurC2TAceSL1344ERR234050
TymurC2TAceSL1344ERR233510
TymurC2TAceSL1344ERR233582
TymurC2TAceSL1344ERR233654
TymurC2TAceSL1344ERR233726
TymurC2TAceSL1344ERR233798
TymurC2TAceSL1344ERR233870
TymurC2TAceSL1344ERR233942
TymurC2TAceSL1344ERR234014
TymurC1TAceSL1344ERR233545
TymurC1TAceSL1344ERR233617
TymurC1TAceSL1344ERR233689
TymurC1TAceSL1344ERR233761
TymurC1TAceSL1344ERR233833
TymurC1TAceSL1344ERR233905
TymurC1TAceSL1344ERR233977
TymurC1TAceSL1344ERR234049
TymurC1TAceSL1344ERR233509
TymurC1TAceSL1344ERR233581
TymurC1TAceSL1344ERR233653
TymurC1TAceSL1344ERR233725
TymurC1TAceSL1344ERR233797
TymurC1TAceSL1344ERR233869
TymurC1TAceSL1344ERR233941
TymurC1TAceSL1344ERR234013
TymurC2TOleSL1344ERR233544
TymurC2TOleSL1344ERR233616
TymurC2TOleSL1344ERR233688
TymurC2TOleSL1344ERR233760
TymurC2TOleSL1344ERR233832
TymurC2TOleSL1344ERR233904
TymurC2TOleSL1344ERR233976
TymurC2TOleSL1344ERR234048
TymurC2TOleSL1344ERR233508
TymurC2TOleSL1344ERR233580
TymurC2TOleSL1344ERR233652
TymurC2TOleSL1344ERR233724
TymurC2TOleSL1344ERR233796
TymurC2TOleSL1344ERR233868
TymurC2TOleSL1344ERR233940
TymurC2TOleSL1344ERR234012
TymurC1TOleSL1344ERR233543
TymurC1TOleSL1344ERR233615
TymurC1TOleSL1344ERR233687
TymurC1TOleSL1344ERR233759
TymurC1TOleSL1344ERR233831
TymurC1TOleSL1344ERR233903
TymurC1TOleSL1344ERR233975
TymurC1TOleSL1344ERR234047
TymurC1TOleSL1344ERR233507
TymurC1TOleSL1344ERR233579
TymurC1TOleSL1344ERR233651
TymurC1TOleSL1344ERR233723
TymurC1TOleSL1344ERR233795
TymurC1TOleSL1344ERR233867
TymurC1TOleSL1344ERR233939
TymurC1TOleSL1344ERR234011
TymurC2TMyrSL1344ERR233542
TymurC2TMyrSL1344ERR233614
TymurC2TMyrSL1344ERR233686
TymurC2TMyrSL1344ERR233758
TymurC2TMyrSL1344ERR233830
TymurC2TMyrSL1344ERR233902
TymurC2TMyrSL1344ERR233974
TymurC2TMyrSL1344ERR234046
TymurC2TMyrSL1344ERR233506
TymurC2TMyrSL1344ERR233578
TymurC2TMyrSL1344ERR233650
TymurC2TMyrSL1344ERR233722
TymurC2TMyrSL1344ERR233794
TymurC2TMyrSL1344ERR233866
TymurC2TMyrSL1344ERR233938
TymurC2TMyrSL1344ERR234010
TymurC1TMyrSL1344ERR233541
TymurC1TMyrSL1344ERR233613
TymurC1TMyrSL1344ERR233685
TymurC1TMyrSL1344ERR233757
TymurC1TMyrSL1344ERR233829
TymurC1TMyrSL1344ERR233901
TymurC1TMyrSL1344ERR233973
TymurC1TMyrSL1344ERR234045
TymurC1TMyrSL1344ERR233505
TymurC1TMyrSL1344ERR233577
TymurC1TMyrSL1344ERR233649
TymurC1TMyrSL1344ERR233721
TymurC1TMyrSL1344ERR233793
TymurC1TMyrSL1344ERR233865
TymurC1TMyrSL1344ERR233937
TymurC1TMyrSL1344ERR234009
TymurC2TManSL1344ERR233540
TymurC2TManSL1344ERR233612
TymurC2TManSL1344ERR233684
TymurC2TManSL1344ERR233756
TymurC2TManSL1344ERR233828
TymurC2TManSL1344ERR233900
TymurC2TManSL1344ERR233972
TymurC2TManSL1344ERR234044
TymurC2TManSL1344ERR233504
TymurC2TManSL1344ERR233576
TymurC2TManSL1344ERR233648
TymurC2TManSL1344ERR233720
TymurC2TManSL1344ERR233792
TymurC2TManSL1344ERR233864
TymurC2TManSL1344ERR233936
TymurC2TManSL1344ERR234008
TymurC1TManSL1344ERR233539
TymurC1TManSL1344ERR233611
TymurC1TManSL1344ERR233683
TymurC1TManSL1344ERR233755
TymurC1TManSL1344ERR233827
TymurC1TManSL1344ERR233899
TymurC1TManSL1344ERR233971
TymurC1TManSL1344ERR234043
TymurC1TManSL1344ERR233503
TymurC1TManSL1344ERR233575
TymurC1TManSL1344ERR233647
TymurC1TManSL1344ERR233719
TymurC1TManSL1344ERR233791
TymurC1TManSL1344ERR233863
TymurC1TManSL1344ERR233935
TymurC1TManSL1344ERR234007
TymurC2TItaSL1344ERR233538
TymurC2TItaSL1344ERR233610
TymurC2TItaSL1344ERR233682
TymurC2TItaSL1344ERR233754
TymurC2TItaSL1344ERR233826
TymurC2TItaSL1344ERR233898
TymurC2TItaSL1344ERR233970
TymurC2TItaSL1344ERR234042
TymurC2TItaSL1344ERR233502
TymurC2TItaSL1344ERR233574
TymurC2TItaSL1344ERR233646
TymurC2TItaSL1344ERR233718
TymurC2TItaSL1344ERR233790
TymurC2TItaSL1344ERR233862
TymurC2TItaSL1344ERR233934
TymurC2TItaSL1344ERR234006
TymurC1TItaSL1344ERR233537
TymurC1TItaSL1344ERR233609
TymurC1TItaSL1344ERR233681
TymurC1TItaSL1344ERR233753
TymurC1TItaSL1344ERR233825
TymurC1TItaSL1344ERR233897
TymurC1TItaSL1344ERR233969
TymurC1TItaSL1344ERR234041
TymurC1TItaSL1344ERR233501
TymurC1TItaSL1344ERR233573
TymurC1TItaSL1344ERR233645
TymurC1TItaSL1344ERR233717
TymurC1TItaSL1344ERR233789
TymurC1TItaSL1344ERR233861
TymurC1TItaSL1344ERR233933
TymurC1TItaSL1344ERR234005
TymurC2TTriSL1344ERR233536
TymurC2TTriSL1344ERR233608
TymurC2TTriSL1344ERR233680
TymurC2TTriSL1344ERR233752
TymurC2TTriSL1344ERR233824
TymurC2TTriSL1344ERR233896
TymurC2TTriSL1344ERR233968
TymurC2TTriSL1344ERR234040
TymurC2TTriSL1344ERR233500
TymurC2TTriSL1344ERR233572
TymurC2TTriSL1344ERR233644
TymurC2TTriSL1344ERR233716
TymurC2TTriSL1344ERR233788
TymurC2TTriSL1344ERR233860
TymurC2TTriSL1344ERR233932
TymurC2TTriSL1344ERR234004
TymurC1TTriSL1344ERR233535
TymurC1TTriSL1344ERR233607
TymurC1TTriSL1344ERR233679
TymurC1TTriSL1344ERR233751
TymurC1TTriSL1344ERR233823
TymurC1TTriSL1344ERR233895
TymurC1TTriSL1344ERR233967
TymurC1TTriSL1344ERR234039
TymurC1TTriSL1344ERR233499
TymurC1TTriSL1344ERR233571
TymurC1TTriSL1344ERR233643
TymurC1TTriSL1344ERR233715
TymurC1TTriSL1344ERR233787
TymurC1TTriSL1344ERR233859
TymurC1TTriSL1344ERR233931
TymurC1TTriSL1344ERR234003
TymurC2TMyoSL1344ERR233534
TymurC2TMyoSL1344ERR233606
TymurC2TMyoSL1344ERR233678
TymurC2TMyoSL1344ERR233750
TymurC2TMyoSL1344ERR233822
TymurC2TMyoSL1344ERR233894
TymurC2TMyoSL1344ERR233966
TymurC2TMyoSL1344ERR234038
TymurC2TMyoSL1344ERR233498
TymurC2TMyoSL1344ERR233570
TymurC2TMyoSL1344ERR233642
TymurC2TMyoSL1344ERR233714
TymurC2TMyoSL1344ERR233786
TymurC2TMyoSL1344ERR233858
TymurC2TMyoSL1344ERR233930
TymurC2TMyoSL1344ERR234002
TymurC1TMyoSL1344ERR233533
TymurC1TMyoSL1344ERR233605
TymurC1TMyoSL1344ERR233677
TymurC1TMyoSL1344ERR233749
TymurC1TMyoSL1344ERR233821
TymurC1TMyoSL1344ERR233893
TymurC1TMyoSL1344ERR233965
TymurC1TMyoSL1344ERR234037
TymurC1TMyoSL1344ERR233497
TymurC1TMyoSL1344ERR233569
TymurC1TMyoSL1344ERR233641
TymurC1TMyoSL1344ERR233713
TymurC1TMyoSL1344ERR233785
TymurC1TMyoSL1344ERR233857
TymurC1TMyoSL1344ERR233929
TymurC1TMyoSL1344ERR234001
TymurC2TLaurSL1344ERR233532
TymurC2TLaurSL1344ERR233604
TymurC2TLaurSL1344ERR233676
TymurC2TLaurSL1344ERR233748
TymurC2TLaurSL1344ERR233820
TymurC2TLaurSL1344ERR233892
TymurC2TLaurSL1344ERR233964
TymurC2TLaurSL1344ERR234036
TymurC2TLaurSL1344ERR233496
TymurC2TLaurSL1344ERR233568
TymurC2TLaurSL1344ERR233640
TymurC2TLaurSL1344ERR233712
TymurC2TLaurSL1344ERR233784
TymurC2TLaurSL1344ERR233856
TymurC2TLaurSL1344ERR233928
TymurC2TLaurSL1344ERR234000
TymurC1TLaurSL1344ERR233531
TymurC1TLaurSL1344ERR233603
TymurC1TLaurSL1344ERR233675
TymurC1TLaurSL1344ERR233747
TymurC1TLaurSL1344ERR233819
TymurC1TLaurSL1344ERR233891
TymurC1TLaurSL1344ERR233963
TymurC1TLaurSL1344ERR234035
TymurC1TLaurSL1344ERR233495
TymurC1TLaurSL1344ERR233567
TymurC1TLaurSL1344ERR233639
TymurC1TLaurSL1344ERR233711
TymurC1TLaurSL1344ERR233783
TymurC1TLaurSL1344ERR233855
TymurC1TLaurSL1344ERR233927
TymurC1TLaurSL1344ERR233999
TymurC2TSuccSL1344ERR233530
TymurC2TSuccSL1344ERR233602
TymurC2TSuccSL1344ERR233674
TymurC2TSuccSL1344ERR233746
TymurC2TSuccSL1344ERR233818
TymurC2TSuccSL1344ERR233890
TymurC2TSuccSL1344ERR233962
TymurC2TSuccSL1344ERR234034
TymurC2TSuccSL1344ERR233494
TymurC2TSuccSL1344ERR233566
TymurC2TSuccSL1344ERR233638
TymurC2TSuccSL1344ERR233710
TymurC2TSuccSL1344ERR233782
TymurC2TSuccSL1344ERR233854
TymurC2TSuccSL1344ERR233926
TymurC2TSuccSL1344ERR233998
TymurC1TSuccSL1344ERR233529
TymurC1TSuccSL1344ERR233601
TymurC1TSuccSL1344ERR233673
TymurC1TSuccSL1344ERR233745
TymurC1TSuccSL1344ERR233817
TymurC1TSuccSL1344ERR233889
TymurC1TSuccSL1344ERR233961
TymurC1TSuccSL1344ERR234033
TymurC1TSuccSL1344ERR233493
TymurC1TSuccSL1344ERR233565
TymurC1TSuccSL1344ERR233637
TymurC1TSuccSL1344ERR233709
TymurC1TSuccSL1344ERR233781
TymurC1TSuccSL1344ERR233853
TymurC1TSuccSL1344ERR233925
TymurC1TSuccSL1344ERR233997
EntC2TAceSL5209ERR233528
EntC2TAceSL5209ERR233600
EntC2TAceSL5209ERR233672
EntC2TAceSL5209ERR233744
EntC2TAceSL5209ERR233816
EntC2TAceSL5209ERR233888
EntC2TAceSL5209ERR233960
EntC2TAceSL5209ERR234032
EntC2TAceSL5209ERR233492
EntC2TAceSL5209ERR233564
EntC2TAceSL5209ERR233636
EntC2TAceSL5209ERR233708
EntC2TAceSL5209ERR233780
EntC2TAceSL5209ERR233852
EntC2TAceSL5209ERR233924
EntC2TAceSL5209ERR233996
EntC1TAceSL5209ERR233527
EntC1TAceSL5209ERR233599
EntC1TAceSL5209ERR233671
EntC1TAceSL5209ERR233743
EntC1TAceSL5209ERR233815
EntC1TAceSL5209ERR233887
EntC1TAceSL5209ERR233959
EntC1TAceSL5209ERR234031
EntC1TAceSL5209ERR233491
EntC1TAceSL5209ERR233563
EntC1TAceSL5209ERR233635
EntC1TAceSL5209ERR233707
EntC1TAceSL5209ERR233779
EntC1TAceSL5209ERR233851
EntC1TAceSL5209ERR233923
EntC1TAceSL5209ERR233995
EntC2TOleSL5209ERR233526
EntC2TOleSL5209ERR233598
EntC2TOleSL5209ERR233670
EntC2TOleSL5209ERR233742
EntC2TOleSL5209ERR233814
EntC2TOleSL5209ERR233886
EntC2TOleSL5209ERR233958
EntC2TOleSL5209ERR234030
EntC2TOleSL5209ERR233490
EntC2TOleSL5209ERR233562
EntC2TOleSL5209ERR233634
EntC2TOleSL5209ERR233706
EntC2TOleSL5209ERR233778
EntC2TOleSL5209ERR233850
EntC2TOleSL5209ERR233922
EntC2TOleSL5209ERR233994
EntC1TOleSL5209ERR233525
EntC1TOleSL5209ERR233597
EntC1TOleSL5209ERR233669
EntC1TOleSL5209ERR233741
EntC1TOleSL5209ERR233813
EntC1TOleSL5209ERR233885
EntC1TOleSL5209ERR233957
EntC1TOleSL5209ERR234029
EntC1TOleSL5209ERR233489
EntC1TOleSL5209ERR233561
EntC1TOleSL5209ERR233633
EntC1TOleSL5209ERR233705
EntC1TOleSL5209ERR233777
EntC1TOleSL5209ERR233849
EntC1TOleSL5209ERR233921
EntC1TOleSL5209ERR233993
EntC2TMyrSL5209ERR233524
EntC2TMyrSL5209ERR233596
EntC2TMyrSL5209ERR233668
EntC2TMyrSL5209ERR233740
EntC2TMyrSL5209ERR233812
EntC2TMyrSL5209ERR233884
EntC2TMyrSL5209ERR233956
EntC2TMyrSL5209ERR234028
EntC2TMyrSL5209ERR233488
EntC2TMyrSL5209ERR233560
EntC2TMyrSL5209ERR233632
EntC2TMyrSL5209ERR233704
EntC2TMyrSL5209ERR233776
EntC2TMyrSL5209ERR233848
EntC2TMyrSL5209ERR233920
EntC2TMyrSL5209ERR233992
EntC1TMyrSL5209ERR233523
EntC1TMyrSL5209ERR233595
EntC1TMyrSL5209ERR233667
EntC1TMyrSL5209ERR233739
EntC1TMyrSL5209ERR233811
EntC1TMyrSL5209ERR233883
EntC1TMyrSL5209ERR233955
EntC1TMyrSL5209ERR234027
EntC1TMyrSL5209ERR233487
EntC1TMyrSL5209ERR233559
EntC1TMyrSL5209ERR233631
EntC1TMyrSL5209ERR233703
EntC1TMyrSL5209ERR233775
EntC1TMyrSL5209ERR233847
EntC1TMyrSL5209ERR233919
EntC1TMyrSL5209ERR233991
EntC2TManSL5209ERR233522
EntC2TManSL5209ERR233594
EntC2TManSL5209ERR233666
EntC2TManSL5209ERR233738
EntC2TManSL5209ERR233810
EntC2TManSL5209ERR233882
EntC2TManSL5209ERR233954
EntC2TManSL5209ERR234026
EntC2TManSL5209ERR233486
EntC2TManSL5209ERR233558
EntC2TManSL5209ERR233630
EntC2TManSL5209ERR233702
EntC2TManSL5209ERR233774
EntC2TManSL5209ERR233846
EntC2TManSL5209ERR233918
EntC2TManSL5209ERR233990
EntC1TManSL5209ERR233593
EntC1TManSL5209ERR233665
EntC1TManSL5209ERR233737
EntC1TManSL5209ERR233809
EntC1TManSL5209ERR233881
EntC1TManSL5209ERR233953
EntC1TManSL5209ERR234025
EntC1TManSL5209ERR233521
EntC1TManSL5209ERR233485
EntC1TManSL5209ERR233557
EntC1TManSL5209ERR233629
EntC1TManSL5209ERR233701
EntC1TManSL5209ERR233773
EntC1TManSL5209ERR233845
EntC1TManSL5209ERR233917
EntC1TManSL5209ERR233989
EntC2TItaSL5209ERR233520
EntC2TItaSL5209ERR233592
EntC2TItaSL5209ERR233664
EntC2TItaSL5209ERR233736
EntC2TItaSL5209ERR233808
EntC2TItaSL5209ERR233880
EntC2TItaSL5209ERR233952
EntC2TItaSL5209ERR234024
EntC2TItaSL5209ERR233484
EntC2TItaSL5209ERR233556
EntC2TItaSL5209ERR233628
EntC2TItaSL5209ERR233700
EntC2TItaSL5209ERR233772
EntC2TItaSL5209ERR233844
EntC2TItaSL5209ERR233916
EntC2TItaSL5209ERR233988
EntC1TItaSL5209ERR233519
EntC1TItaSL5209ERR233591
EntC1TItaSL5209ERR233663
EntC1TItaSL5209ERR233735
EntC1TItaSL5209ERR233807
EntC1TItaSL5209ERR233879
EntC1TItaSL5209ERR233951
EntC1TItaSL5209ERR234023
EntC1TItaSL5209ERR233483
EntC1TItaSL5209ERR233555
EntC1TItaSL5209ERR233627
EntC1TItaSL5209ERR233699
EntC1TItaSL5209ERR233771
EntC1TItaSL5209ERR233843
EntC1TItaSL5209ERR233915
EntC1TItaSL5209ERR233987
EntC2TTriSL5209ERR233518
EntC2TTriSL5209ERR233590
EntC2TTriSL5209ERR233662
EntC2TTriSL5209ERR233734
EntC2TTriSL5209ERR233806
EntC2TTriSL5209ERR233878
EntC2TTriSL5209ERR233950
EntC2TTriSL5209ERR234022
EntC2TTriSL5209ERR233482
EntC2TTriSL5209ERR233554
EntC2TTriSL5209ERR233626
EntC2TTriSL5209ERR233698
EntC2TTriSL5209ERR233770
EntC2TTriSL5209ERR233842
EntC2TTriSL5209ERR233914
EntC2TTriSL5209ERR233986
EntC1TTriSL5209ERR233517
EntC1TTriSL5209ERR233589
EntC1TTriSL5209ERR233661
EntC1TTriSL5209ERR233733
EntC1TTriSL5209ERR233805
EntC1TTriSL5209ERR233877
EntC1TTriSL5209ERR233949
EntC1TTriSL5209ERR234021
EntC1TTriSL5209ERR233481
EntC1TTriSL5209ERR233553
EntC1TTriSL5209ERR233625
EntC1TTriSL5209ERR233697
EntC1TTriSL5209ERR233769
EntC1TTriSL5209ERR233841
EntC1TTriSL5209ERR233913
EntC1TTriSL5209ERR233985
EntC2TMyoSL5209ERR233516
EntC2TMyoSL5209ERR233588
EntC2TMyoSL5209ERR233660
EntC2TMyoSL5209ERR233732
EntC2TMyoSL5209ERR233804
EntC2TMyoSL5209ERR233876
EntC2TMyoSL5209ERR233948
EntC2TMyoSL5209ERR234020
EntC2TMyoSL5209ERR233480
EntC2TMyoSL5209ERR233552
EntC2TMyoSL5209ERR233624
EntC2TMyoSL5209ERR233696
EntC2TMyoSL5209ERR233768
EntC2TMyoSL5209ERR233840
EntC2TMyoSL5209ERR233912
EntC2TMyoSL5209ERR233984
EntC1TMyoSL5209ERR233515
EntC1TMyoSL5209ERR233587
EntC1TMyoSL5209ERR233659
EntC1TMyoSL5209ERR233731
EntC1TMyoSL5209ERR233803
EntC1TMyoSL5209ERR233875
EntC1TMyoSL5209ERR233947
EntC1TMyoSL5209ERR234019
EntC1TMyoSL5209ERR233479
EntC1TMyoSL5209ERR233551
EntC1TMyoSL5209ERR233623
EntC1TMyoSL5209ERR233695
EntC1TMyoSL5209ERR233767
EntC1TMyoSL5209ERR233839
EntC1TMyoSL5209ERR233911
EntC1TMyoSL5209ERR233983
EntC2TLaurSL5209ERR233514
EntC2TLaurSL5209ERR233586
EntC2TLaurSL5209ERR233658
EntC2TLaurSL5209ERR233730
EntC2TLaurSL5209ERR233802
EntC2TLaurSL5209ERR233874
EntC2TLaurSL5209ERR233946
EntC2TLaurSL5209ERR234018
EntC2TLaurSL5209ERR233478
EntC2TLaurSL5209ERR233550
EntC2TLaurSL5209ERR233622
EntC2TLaurSL5209ERR233694
EntC2TLaurSL5209ERR233766
EntC2TLaurSL5209ERR233838
EntC2TLaurSL5209ERR233910
EntC2TLaurSL5209ERR233982
EntC1TLaurSL5209ERR233513
EntC1TLaurSL5209ERR233585
EntC1TLaurSL5209ERR233657
EntC1TLaurSL5209ERR233729
EntC1TLaurSL5209ERR233801
EntC1TLaurSL5209ERR233873
EntC1TLaurSL5209ERR233945
EntC1TLaurSL5209ERR234017
EntC1TLaurSL5209ERR233477
EntC1TLaurSL5209ERR233549
EntC1TLaurSL5209ERR233621
EntC1TLaurSL5209ERR233693
EntC1TLaurSL5209ERR233765
EntC1TLaurSL5209ERR233837
EntC1TLaurSL5209ERR233909
EntC1TLaurSL5209ERR233981
EntC2TSuccSL5209ERR233512
EntC2TSuccSL5209ERR233584
EntC2TSuccSL5209ERR233656
EntC2TSuccSL5209ERR233728
EntC2TSuccSL5209ERR233800
EntC2TSuccSL5209ERR233872
EntC2TSuccSL5209ERR233944
EntC2TSuccSL5209ERR234016
EntC2TSuccSL5209ERR233476
EntC2TSuccSL5209ERR233548
EntC2TSuccSL5209ERR233620
EntC2TSuccSL5209ERR233692
EntC2TSuccSL5209ERR233764
EntC2TSuccSL5209ERR233836
EntC2TSuccSL5209ERR233908
EntC2TSuccSL5209ERR233980
EntC1TSuccSL5209ERR233511
EntC1TSuccSL5209ERR233583
EntC1TSuccSL5209ERR233655
EntC1TSuccSL5209ERR233727
EntC1TSuccSL5209ERR233799
EntC1TSuccSL5209ERR233871
EntC1TSuccSL5209ERR233943
EntC1TSuccSL5209ERR234015
EntC1TSuccSL5209ERR233475
EntC1TSuccSL5209ERR233547
EntC1TSuccSL5209ERR233619
EntC1TSuccSL5209ERR233691
EntC1TSuccSL5209ERR233763
EntC1TSuccSL5209ERR233835
EntC1TSuccSL5209ERR233907
EntC1TSuccSL5209ERR233979
EntC2TGlucSL5209ERR234066
EntC2TGlucSL5209ERR234082
EntC2TGlucSL5209ERR234062
EntC2TGlucSL5209ERR234078
EntC1TGlucSL5209ERR234065
EntC1TGlucSL5209ERR234081
EntC1TGlucSL5209ERR234061
EntC1TGlucSL5209ERR234077
TymurC2TGlucSL1345ERR234064
TymurC2TGlucSL1345ERR234080
TymurC2TGlucSL1345ERR234060
TymurC2TGlucSL1345ERR234076
TymurC1TGlucSL1344ERR234063
TymurC1TGlucSL1344ERR234079
TymurC1TGlucSL1344ERR234059
TymurC1TGlucSL1344ERR234075
TymurC2TTartSL1344ERR234058
TymurC2TTartSL1344ERR234074
TymurC2TTartSL1344ERR234054
TymurC2TTartSL1344ERR234070
TymurC1TTartSL1344ERR234057
TymurC1TTartSL1344ERR234073
TymurC1TTartSL1344ERR234053
TymurC1TTartSL1344ERR234069
EntC2TTartSL5209ERR234056
EntC2TTartSL5209ERR234072
EntC2TTartSL5209ERR234052
EntC2TTartSL5209ERR234068
EntC1TTartSL5209ERR234055
EntC1TTartSL5209ERR234071
EntC1TTartSL5209ERR234051
EntC1TTartSL5209ERR234067

Phylogenomics of invasive non-typhoidal Salmonella (NTS) disease in Southern Vietnam

Sample

Strain

Run Accession

009_529009 529ERR161980
UI_21389UI 21389ERR161979
2008120081ERR161978
1505_NTS1505ERR161977
1140_NTS1140ERR161976
664_NTS664ERR161975
184_NTS184ERR161974
C2235C2235ERR161973
3035630356ERR161972
3001230012ERR161971
2009920099ERR161970
1022110221ERR161969
UI_20919UI 20919ERR161968
UI_6044UI 6044ERR161967
DSal7DSal7ERR161966
1479_NTS1479ERR161965
922_NTS922ERR161964
652_NTS652ERR161963
177_NTS177ERR161962
C2191C2191ERR161961
3026730267ERR161960
2048020480ERR161959
2010120101ERR161958
1018210182ERR161957
UI_21568UI 21568ERR161956
UI_21054_2UI 21054/2ERR161955
DSal6DSal6ERR161954
1436_NTS1436ERR161456
845_NTS845ERR161455
617_NTS617ERR161454
176_NTS176ERR161453
C2047C2047ERR161452
3024330243ERR161451
2033720337ERR161450
DSal8DSal8ERR161449
1014610146ERR161448
ST_771ST 771ERR161447
UI_21563UI 21563ERR161446
DSal5DSal5ERR161445
1428_NTS1428ERR161444
802_NTS802ERR161443
596_NTS596ERR161442
170_NTS170ERR161441
C2045C2045ERR161440
3016130161ERR161439
2027820278ERR161438
2005720057ERR161437
1013710137ERR161436
1701_NTS1701ERR161435
UI_14190UI 14190ERR161434
DSal4DSal4ERR161433
1403_NTS1403ERR161432
773_NTS773ERR161431
589_NTS589ERR161430
151_NTS151ERR161429
C2442C2442ERR161428
3014430144ERR161427
2027720277ERR161426
2001820018ERR161425
1012410124ERR161424
68_NTS68ERR161423
UI_14090UI 14090ERR161422
DSal3DSal3ERR161421
1264_NTS1264ERR161420
745_NTS745ERR161419
541_NTS541ERR161418
148_NTS148ERR161417
165_VDQ165 VDQERR161416
3013130131ERR161415
2023520235ERR161414
2000720007ERR161413
1006810068ERR161412
UI_9699_5UI 9699/5ERR161411
PH_1352PH 1352ERR161410
DSal2DSal2ERR161409
1222_NTS1222ERR161408
712_NTS712ERR161407
455_NTS455ERR161406
1031410314ERR161405
121_DQT121 DQTERR161404
3009930099ERR161403
2020720207ERR161402
2000520005ERR161401
1005210052ERR161400
UI_10785UI 10785ERR161399
UI_8261UI 8261ERR161398
DSal1DSal1ERR161397
1166_NTS1166ERR161953
692_NTS692ERR161952
198_NTS198ERR161396
C2362C2362ERR161395
3038530385ERR161394
3001530015ERR161393
2015020150ERR161392
1041310413ERR161391
1004510045ERR161390

Genomic and immunological characterization of clinical isolates of non-typhoidal Salmonella from Kenya

Sample

Strain

Run Accession

Ke445UnknownERR212630
Ke444UnknownERR212629
Ke443UnknownERR212628
Ke442UnknownERR212627
Ke441UnknownERR212626
Ke440UnknownERR212625
Ke439UnknownERR212624
Ke438UnknownERR212623
Ke437UnknownERR212622
Ke436UnknownERR212621
Ke435UnknownERR212620
Ke434UnknownERR212619
Ke433UnknownERR212618
Ke432UnknownERR212617
Ke431UnknownERR212616
Ke423UnknownERR212608
Ke422UnknownERR212607
Ke421UnknownERR212606
Ke420UnknownERR212605
Ke419UnknownERR212604
Ke418UnknownERR212603
Ke417UnknownERR212602
Ke416UnknownERR212601
Ke415UnknownERR212600
Ke414UnknownERR212599
Ke413UnknownERR212598
Ke412UnknownERR212597
Ke411UnknownERR212596
Ke410UnknownERR212595
Ke409UnknownERR212594
Ke408UnknownERR212593
Ke407UnknownERR212592
Ke406UnknownERR212591
Ke405UnknownERR212590
Ke404UnknownERR212589
Ke403UnknownERR212588
Ke402UnknownERR212587
Ke401UnknownERR212586
Ke400UnknownERR212585
Ke399UnknownERR212584
Ke398UnknownERR212583
Ke397UnknownERR212582
Ke396UnknownERR212581
Ke395UnknownERR212580
Ke394UnknownERR212579
Ke393UnknownERR212578
Ke392UnknownERR212577
Ke391UnknownERR212576
Ke390UnknownERR212575
Ke389UnknownERR212574
Ke388UnknownERR212573
Ke387UnknownERR212572
Ke386UnknownERR212571
Ke385UnknownERR212570
Ke384UnknownERR212569
Ke382UnknownERR212568
Ke381UnknownERR212567
Ke380UnknownERR212566
Ke379UnknownERR212565
Ke378UnknownERR212564
Ke377UnknownERR212563
Ke374UnknownERR212562
Ke373UnknownERR212561
Ke371UnknownERR212560
Ke370UnknownERR212559
Ke369UnknownERR212558
Ke368UnknownERR212557
Ke367UnknownERR212556
Ke366UnknownERR212555
Ke365UnknownERR212554
Ke362UnknownERR212553
Ke361UnknownERR212552
Ke360UnknownERR212551
Ke359UnknownERR212550
Ke358UnknownERR212549
Ke357UnknownERR212548
Ke356UnknownERR212547
Ke355UnknownERR212546
Ke343UnknownERR212545
Ke333UnknownERR212544
Ke325UnknownERR212543
Ke319UnknownERR212542
Ke318UnknownERR212541
Ke312UnknownERR212540
Ke304UnknownERR212539
Ke303UnknownERR212538
Ke302UnknownERR212537
Ke300UnknownERR212536
Ke299UnknownERR212535
Ke297UnknownERR212534
Ke296UnknownERR212533
Ke294UnknownERR212532
Ke292UnknownERR212531
Ke291UnknownERR212530
Ke290UnknownERR212529
Ke289UnknownERR212528
Ke288UnknownERR212527
Ke287UnknownERR212526
Ke285UnknownERR212525
Ke276UnknownERR212524
Ke274UnknownERR212523
Ke273UnknownERR212522
Ke272UnknownERR212521
Ke269UnknownERR212520
Ke267UnknownERR212519
Ke254UnknownERR212518
Ke249UnknownERR212517
Ke245UnknownERR212516
Ke244UnknownERR212515
Ke243UnknownERR212514
Ke241UnknownERR212513
Ke239UnknownERR212512
Ke238UnknownERR212511
Ke492UnknownERR212677
Ke491UnknownERR212676
Ke490UnknownERR212675
Ke489UnknownERR212674
Ke488UnknownERR212673
Ke487UnknownERR212672
Ke486UnknownERR212671
Ke485UnknownERR212670
Ke484UnknownERR212669
Ke483UnknownERR212668
Ke482UnknownERR212667
Ke481UnknownERR212666
Ke480UnknownERR212665
Ke479UnknownERR212664
Ke478UnknownERR212663
Ke477UnknownERR212662
Ke476UnknownERR212661
Ke475UnknownERR212660
Ke474UnknownERR212659
Ke473UnknownERR212658
Ke472UnknownERR212657
Ke471UnknownERR212656
Ke470UnknownERR212655
Ke469UnknownERR212654
Ke468UnknownERR212653
Ke467UnknownERR212652
Ke466UnknownERR212651
Ke465UnknownERR212650
Ke464UnknownERR212649
Ke463UnknownERR212648
Ke462UnknownERR212647
Ke461UnknownERR212646
Ke460UnknownERR212645
Ke459UnknownERR212644
Ke458UnknownERR212643
Ke457UnknownERR212642
Ke456UnknownERR212641
Ke455UnknownERR212640
Ke454UnknownERR212639
Ke453UnknownERR212638
Ke452UnknownERR212637
Ke451UnknownERR212636
Ke450UnknownERR212635
Ke449UnknownERR212634
Ke448UnknownERR212633
Ke447UnknownERR212632
Ke446UnknownERR212631
Ke430UnknownERR212615
Ke429UnknownERR212614
Ke428UnknownERR212613
Ke427UnknownERR212612
Ke426UnknownERR212611
Ke425UnknownERR212610
Ke424UnknownERR212609
Ke237UnknownERR217473
Ke234UnknownERR217472
Ke233UnknownERR217471
Ke232UnknownERR217470
Ke230UnknownERR217469
Ke220UnknownERR217468
Ke219UnknownERR217467
Ke216UnknownERR217466
Ke215UnknownERR217465
Ke213UnknownERR217464
Ke212UnknownERR217463
Ke205UnknownERR217462
Ke204UnknownERR217461
Ke199UnknownERR217460
Ke198UnknownERR217459
Ke197UnknownERR217458
Ke196UnknownERR217457
Ke194UnknownERR217456
Ke193UnknownERR217455
Ke192UnknownERR217454
Ke189UnknownERR217453
Ke188UnknownERR217452
Ke187UnknownERR217451
Ke186UnknownERR217450
Ke184UnknownERR217449
Ke181UnknownERR217448
Ke180UnknownERR217447
Ke179UnknownERR217446
Ke178UnknownERR217445
Ke174UnknownERR217444
Ke172UnknownERR217443
Ke169UnknownERR217442
Ke167UnknownERR217441
Ke164UnknownERR217440
Ke163UnknownERR217439
Ke160UnknownERR217438
Ke158UnknownERR217437
Ke153UnknownERR217436
Ke152UnknownERR217435
Ke151UnknownERR217434
Ke150UnknownERR217433
Ke148UnknownERR217432
Ke143UnknownERR217431
Ke142UnknownERR217430
Ke141UnknownERR217429
Ke124UnknownERR217428
Ke122UnknownERR217427
Ke117UnknownERR217426
Ke112UnknownERR217425
Ke111UnknownERR217424
Ke108UnknownERR217423
Ke107UnknownERR217422
Ke105UnknownERR217421
Ke103UnknownERR217420
Ke101UnknownERR217419
Ke100UnknownERR217418
Ke098UnknownERR217417
Ke097UnknownERR217416
Ke096UnknownERR217415
Ke091UnknownERR217414
Ke088UnknownERR217413
Ke086UnknownERR217412
Ke072UnknownERR217411
Ke071UnknownERR217410
Ke069UnknownERR217409
Ke068UnknownERR217408
Ke065UnknownERR217407
Ke062UnknownERR217406
Ke048UnknownERR217405
Ke045UnknownERR217404
Ke044UnknownERR217403
Ke042UnknownERR217402
Ke040UnknownERR217401
Ke038UnknownERR217400
Ke033UnknownERR217399
Ke032UnknownERR217398
Ke031UnknownERR217397
Ke030UnknownERR217396
Ke028UnknownERR217395
Ke027UnknownERR217394
Ke026UnknownERR217393
Ke023UnknownERR217392
Ke022UnknownERR217391
Ke021UnknownERR217390
Ke020UnknownERR217389
Ke019UnknownERR217388
Ke017UnknownERR217387
Ke016UnknownERR217386
Ke012UnknownERR217385
Ke011UnknownERR217384
Ke007UnknownERR217383
Ke005UnknownERR217382
Ke004UnknownERR217381
Ke003UnknownERR217380
Ke002UnknownERR217379
Ke001UnknownERR217378
2303STDY5574375KeN143ERR387723
2303STDY55744058946ERR387722
2303STDY55744048945ERR387721
2303STDY55744028943ERR387720
2303STDY5574400KeN151ERR387719
2303STDY5574399KeN145ERR387718
2303STDY5574398KeN141ERR387717
2303STDY5574397KeN140ERR387716
2303STDY5574396KeN137ERR387715
2303STDY5574395KeN135ERR387714
2303STDY5574394KeN127ERR387713
2303STDY5574393KeN120ERR387712
2303STDY5574392KeN90ERR387711
2303STDY5574391KeN88ERR387710
2303STDY5574390KeN85ERR387709
2303STDY5574389KeN66ERR387708
2303STDY5574388KeN41ERR387707
2303STDY5574387KeN37ERR387706
2303STDY5574386KeN35ERR387705
2303STDY5574385KeN26ERR387704
2303STDY5574384KeN25ERR387703
2303STDY5574383KeN22ERR387702
2303STDY5574382KeN19ERR387701
2303STDY5574381KeN17ERR387700
2303STDY5574380KeN16ERR387699
2303STDY5574379KeN14ERR387698
2303STDY5574378KeN7ERR387697
2303STDY5574377KeN163ERR387696
2303STDY5574376KeN149ERR387695
2303STDY5574374KeN142ERR387694
2303STDY5574373KeN139ERR387693
2303STDY5574372KeN138ERR387692
2303STDY5574371KeN136ERR387691
2303STDY5574370KeN134ERR387690
2303STDY5574369KeN133ERR387689
2303STDY5574368KeN132ERR387688
2303STDY5574367KeN130ERR387687
2303STDY5574366KeN129ERR387686
2303STDY5574365KeN128ERR387685
2303STDY5574364KeN126ERR387684
2303STDY5574363KeN125ERR387683
2303STDY5574362KeN124ERR387682
2303STDY5574361KeN123ERR387681
2303STDY5574360KeN117ERR387680
2303STDY5574359KeN116ERR387679
2303STDY5574358KeN65ERR387678
2303STDY5574357KeN62ERR387677
2303STDY5574356KeN51ERR387676
2303STDY5574354KeN36ERR387675
2303STDY5574352KeN31ERR387674
2303STDY5574351KeN29ERR387673
2303STDY5574350KeN28ERR387672
2303STDY5574349KeN27ERR387671
2303STDY5574348KeN24ERR387670
2303STDY5574347KeN23ERR387669
2303STDY5574346KeN21ERR387668
2303STDY5574345KeN18ERR387667
2303STDY5574343KeN13ERR387666
2303STDY5574342KeN12ERR387665
2303STDY5574340KeN10ERR387664
2303STDY5574339KeN9ERR387663
2303STDY5574338KeN6ERR387662
2303STDY5574336KeN3ERR387661
2303STDY5574334KeN1ERR387660
2303STDY5574344KeN15ERR387659
2303STDY5574335KeN2ERR387658
2303STDY55744078948ERR387657
2303STDY55744018942ERR387656
2303STDY55744038944ERR387655
2303STDY5574337KeN5ERR387654
2303STDY5574341KeN11ERR387653
2303STDY55744068947ERR387652
2303STDY5574355KeN39ERR387651
2303STDY5574353KeN32ERR387650
2303STDY5766910UnknownERR581021
2303STDY5766910UnknownERR581035
2303STDY5766910UnknownERR581047
2303STDY5766910UnknownERR581048
2303STDY5766910UnknownERR581049
2303STDY5766918UnknownERR581033
2303STDY5766918UnknownERR581045
2303STDY5766918UnknownERR581053
2303STDY5766911UnknownERR581022
2303STDY5766911UnknownERR581050
2303STDY5766911UnknownERR581026
2303STDY5766911UnknownERR581037
2303STDY5766912UnknownERR581034
2303STDY5766912UnknownERR581051
2303STDY5766912UnknownERR581039
2303STDY5766913UnknownERR581023
2303STDY5766913UnknownERR581027
2303STDY5766914UnknownERR581024
2303STDY5766914UnknownERR581029
2303STDY5766915UnknownERR581030
2303STDY5766915UnknownERR581052
2303STDY5766915UnknownERR581041
2303STDY5766916UnknownERR581031
2303STDY5766916UnknownERR581043
2303STDY5766917UnknownERR581032
2303STDY5766917UnknownERR581044
2303STDY5766917UnknownERR581046
2303STDY5803582UnknownERR581054
2303STDY5803583UnknownERR581055

Atypical S. Enteritidis persistent infection in an immune deficient patient

Sample

Strain

Run Accession

MB18868MB18868ERR197446
P537361P537361ERR197445
P542816P542816ERR197444
P542817P542817ERR197443
P573395P573395ERR197442
MM_SW824_14_2MM_SW824_14_2ERR197441
MM_SW824_14_1MM_SW824_14_1ERR197440
MM_SW824_14MM_SW824_14ERR197439
MM_SW824_10MM_SW824_10ERR197438
MM_SW824_7MM_SW824_7ERR197437
MM_SW824_4MM_SW824_4ERR197436
MM_SW824_1MM_SW824_1ERR197435
MM_SW824_0MM_SW824_0ERR197434
MM_PT4_14_2MM_PT4_14_2ERR197433
MM_PT4_14_1MM_PT4_14_1ERR197432
MM_PT4_14MM_PT4_14ERR197431
MM_PT4_10MM_PT4_10ERR197430
MM_PT4_7MM_PT4_7ERR197429
MM_PT4_4MM_PT4_4ERR197428
MM_PT4_1MM_PT4_1ERR197427
MM_PT4_0MM_PT4_0ERR197426
LB_B20062_14_2LB_B20062_14_2ERR197425
LB_B20062_14_1LB_B20062_14_1ERR197424
LB_B20062_14LB_B20062_14ERR197423
LB_B20062_13LB_B20062_13ERR197422
LB_B20062_10LB_B20062_10ERR197421
LB_B20062_7LB_B20062_7ERR197420
LB_B20062_4LB_B20062_4ERR197419
LB_B20062_1LB_B20062_1ERR197418
LB_B20062_0LB_B20062_0ERR197417
LB_SW824_14_2LB_SW824_14_2ERR197416
LB_SW824_14_1LB_SW824_14_1ERR197415
LB_SW824_14LB_SW824_14ERR197414
LB_SW824_13LB_SW824_13ERR197413
LB_SW824_10LB_SW824_10ERR197412
LB_SW824_7LB_SW824_7ERR197411
LB_SW824_4LB_SW824_4ERR197410
LB_SW824_1LB_SW824_1ERR197409
LB_SW824_0LB_SW824_0ERR197408
LB_PT4_14_2LB_PT4_14_2ERR197407
LB_PT4_14_1LB_PT4_14_1ERR197406
LB_PT4_14LB_PT4_14ERR197405
LB_PT4_13LB_PT4_13ERR197404
LB_PT4_10LB_PT4_10ERR197403
LB_PT4_7LB_PT4_7ERR197402
LB_PT4_4LB_PT4_4ERR197401
LB_PT4_1LB_PT4_1ERR197400
LB_PT4_0LB_PT4_0ERR197399
2315STDY5852734UnknownERR654502
2315STDY5852734UnknownERR654489
2315STDY5852735UnknownERR654503
2315STDY5852735UnknownERR654490
2315STDY5852735UnknownERR654492
2315STDY5852736UnknownERR654504
2315STDY5852736UnknownERR654491
2315STDY5852736UnknownERR654493
2315STDY5852737UnknownERR654505
2315STDY5852737UnknownERR654494
2315STDY5852738UnknownERR654506
2315STDY5852738UnknownERR654495
2315STDY5852739UnknownERR654507
2315STDY5852739UnknownERR654496

Genomic study of Typhi from typhoid-endemic regions of Asia and Africa and interactions with vaccines, antimicrobials, HIV and asymptomatic carriage

Sample

Strain

Run Accession

MDUST88UnknownERR204259
MDUST87UnknownERR204258
MDUST86UnknownERR204257
MDUST85UnknownERR204256
MDUST84UnknownERR204255
MDUST83UnknownERR204254
MDUST82UnknownERR204253
MDUST73UnknownERR204244
MDUST105UnknownERR204276
MDUST104UnknownERR204275
MDUST103UnknownERR204274
MDUST102UnknownERR204273
MDUST101UnknownERR204272
MDUST100UnknownERR204271
MDUST99UnknownERR204270
MDUST98UnknownERR204269
MDUST97UnknownERR204268
MDUST96UnknownERR204267
MDUST95UnknownERR204266
MDUST94UnknownERR204265
MDUST93UnknownERR204264
MDUST92UnknownERR204263
MDUST91UnknownERR204262
MDUST90UnknownERR204261
MDUST89UnknownERR204260
MDUST81UnknownERR204252
MDUST80UnknownERR204251
MDUST79UnknownERR204250
MDUST78UnknownERR204249
MDUST77UnknownERR204248
MDUST76UnknownERR204247
MDUST75UnknownERR204246
MDUST74UnknownERR204245
MDUST22UnknownERR213240
MDUST21UnknownERR213239
MDUST20UnknownERR213238
MDUST19UnknownERR213237
MDUST18UnknownERR213236
MDUST17UnknownERR213235
MDUST16UnknownERR213234
MDUST15UnknownERR213233
MDUST14UnknownERR213232
MDUST13UnknownERR213231
MDUST12UnknownERR213230
MDUST11UnknownERR213229
MDUST10UnknownERR213228
MDUST2UnknownERR213220
MDUST1UnknownERR213219
MDUST72UnknownERR213290
MDUST71UnknownERR213289
MDUST70UnknownERR213288
MDUST69UnknownERR213287
MDUST68UnknownERR213286
MDUST67UnknownERR213285
MDUST66UnknownERR213284
MDUST65UnknownERR213283
MDUST64UnknownERR213282
MDUST63UnknownERR213281
MDUST62UnknownERR213280
MDUST61UnknownERR213279
MDUST60UnknownERR213278
MDUST59UnknownERR213277
MDUST58UnknownERR213276
MDUST57UnknownERR213275
MDUST56UnknownERR213274
MDUST55UnknownERR213273
MDUST54UnknownERR213272
MDUST53UnknownERR213271
MDUST52UnknownERR213270
MDUST51UnknownERR213269
MDUST50UnknownERR213268
MDUST49UnknownERR213267
MDUST48UnknownERR213266
MDUST47UnknownERR213265
MDUST46UnknownERR213264
MDUST45UnknownERR213263
MDUST44UnknownERR213262
MDUST43UnknownERR213261
MDUST42UnknownERR213260
MDUST41UnknownERR213259
MDUST40UnknownERR213258
MDUST39UnknownERR213257
MDUST38UnknownERR213256
MDUST37UnknownERR213255
MDUST36UnknownERR213254
MDUST35UnknownERR213253
MDUST34UnknownERR213252
MDUST33UnknownERR213251
MDUST32UnknownERR213250
MDUST31UnknownERR213249
MDUST30UnknownERR213248
MDUST29UnknownERR213247
MDUST28UnknownERR213246
MDUST27UnknownERR213245
MDUST26UnknownERR213244
MDUST25UnknownERR213243
MDUST24UnknownERR213242
MDUST23UnknownERR213241
MDUST9UnknownERR213227
MDUST8UnknownERR213226
MDUST7UnknownERR213225
MDUST6UnknownERR213224
MDUST5UnknownERR213223
MDUST4UnknownERR213222
MDUST3UnknownERR213221
2332STDY5457392A48077ERR279192
2332STDY5457391D41342ERR279191
2332STDY5457390A40566ERR279190
2332STDY5457389A39483ERR279189
2332STDY5457388D32547ERR279188
2332STDY5457387D28995ERR279187
2332STDY5457386C11168ERR279186
2332STDY5457385D43296ERR279185
2332STDY5457384D49229ERR279184
2332STDY5457383D41185ERR279183
2332STDY5457382A40201ERR279182
2332STDY5457381D36407ERR279181
2332STDY5457380D29702ERR279180
2332STDY5457379A33243ERR279179
2332STDY5457378A33112ERR279178
2332STDY5457377A32420ERR279177
2332STDY54573761031581ERR279176
2332STDY54573751026460ERR279175
2332STDY54573741028963ERR279174
2332STDY54573731021788ERR279173
2332STDY54573721019804ERR279172
2332STDY54573711019722ERR279171
2332STDY54573701014152ERR279170
2332STDY5457369A55865ERR279169
2332STDY54573681032168ERR279168
2332STDY54573671027691ERR279167
2332STDY54573661029451ERR279166
2332STDY54573651018617ERR279165
2332STDY54573641019806ERR279164
2332STDY54573631020059ERR279163
2332STDY54573621012727ERR279162
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2332STDY5490367520772ERR338024
2332STDY5490366493790ERR338023
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2332STDY5490331TY108ERR337988
2332STDY5490330TY107ERR337987
2332STDY5490329TY068ERR337986
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2332STDY5490327TY053ERR337984
2332STDY5490326TY032ERR337983
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2332STDY5490323TY012ERR337980
2332STDY54903222181ERR337979
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2332STDY5521389UI 3396ERR340814
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2332STDY5521387UI 3275ERR340812
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2332STDY5521383UI 3151ERR340810
2332STDY5521382UI 315ERR340809
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2332STDY5521380UI 286ERR340807
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2332STDY5521356UI 1059ERR340783
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2332STDY5521353LNT 22ERR340780
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2332STDY55213492007-003270ERR340776
2332STDY55213482007-007363ERR340775
2332STDY55213472007-024758ERR340774
2332STDY55213462007-023116ERR340773
2332STDY55213452007-024445ERR340772
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2332STDY55213432007-015823ERR340770
2332STDY55213422001-100239ERR340769
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2332STDY55213402008-006685ERR340767
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2332STDY55213322001-102645ERR340759
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2332STDY5539195SGB112ERR343343
2332STDY5539195SGB112ERR343438
2332STDY5539194SGB111ERR343342
2332STDY5539194SGB111ERR343437
2332STDY5539193SGB110ERR343341
2332STDY5539193SGB110ERR343436
2332STDY5539192SGB109ERR343435
2332STDY5539192SGB109ERR343340
2332STDY5539191SGB108ERR343339
2332STDY5539191SGB108ERR343434
2332STDY5539190SGB92ERR343338
2332STDY5539190SGB92ERR343433
2332STDY5539189SGB90ERR343337
2332STDY5539189SGB90ERR343432
2332STDY5539188SGB89ERR343336
2332STDY5539188SGB89ERR343431
2332STDY5539187SGB88ERR343335
2332STDY5539187SGB88ERR343430
2332STDY5539186SGB87ERR343334
2332STDY5539186SGB87ERR343429
2332STDY5539185SGB85ERR343333
2332STDY5539185SGB85ERR343428
2332STDY5539184SGB82ERR343332
2332STDY5539184SGB82ERR343427
2332STDY5539183SGB31ERR343331
2332STDY5539183SGB31ERR343426
2332STDY5539182H12ESR04734-001AERR343330
2332STDY5539182H12ESR04734-001AERR343425
2332STDY5539181H12ESR02737-001AERR343329
2332STDY5539181H12ESR02737-001AERR343424
2332STDY5539180H12ESR00755-001AERR343328
2332STDY5539180H12ESR00755-001AERR343423
2332STDY5539179ERL12960ERR343327
2332STDY5539179ERL12960ERR343422
2332STDY5539178ERL12959ERR343421
2332STDY5539178ERL12959ERR343326
2332STDY5539177ERL12680ERR343325
2332STDY5539177ERL12680ERR343420
2332STDY5539176ERL12590ERR343324
2332STDY5539176ERL12590ERR343419
2332STDY5539175ERL12375ERR343323
2332STDY5539175ERL12375ERR343418
2332STDY5539174ERL12148ERR343322
2332STDY5539174ERL12148ERR343417
2332STDY5539173ERL11909ERR343321
2332STDY5539173ERL11909ERR343416
2332STDY5539172ERL11877ERR343320
2332STDY5539172ERL11877ERR343415
2332STDY5539171ERL114224ERR343319
2332STDY5539171ERL114224ERR343414
2332STDY5539170ERL114070ERR343318
2332STDY5539170ERL114070ERR343413
2332STDY5539169ERL114000ERR343317
2332STDY5539169ERL114000ERR343412
2332STDY5539168ERL113434ERR343316
2332STDY5539168ERL113434ERR343411
2332STDY5539167ERL113095ERR343315
2332STDY5539167ERL113095ERR343410
2332STDY5539166ERL11299ERR343314
2332STDY5539166ERL11299ERR343409
2332STDY5539165ERL111998ERR343313
2332STDY5539165ERL111998ERR343408
2332STDY5539164ERL111572ERR343312
2332STDY5539164ERL111572ERR343407
2332STDY5539163ERL10504ERR343406
2332STDY5539163ERL10504ERR343311
2332STDY5539162ERL10492ERR343310
2332STDY5539162ERL10492ERR343405
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2332STDY5539160ERL103914ERR343308
2332STDY5539160ERL103914ERR343403
2332STDY5539159ERL103534ERR343307
2332STDY5539159ERL103534ERR343402
2332STDY5539158ERL10338ERR343306
2332STDY5539158ERL10338ERR343401
2332STDY5539157ERL10320ERR343305
2332STDY5539157ERL10320ERR343400
2332STDY5539156ERL102461ERR343304
2332STDY5539156ERL102461ERR343399
2332STDY5539155ERL102275ERR343303
2332STDY5539155ERL102275ERR343398
2332STDY5539154ERL102156ERR343302
2332STDY5539154ERL102156ERR343397
2332STDY5539153ERL101621ERR343301
2332STDY5539153ERL101621ERR343396
2332STDY5539152ERL101104ERR343300
2332STDY5539152ERL101104ERR343395
2332STDY5539151ERL09892ERR343394
2332STDY5539151ERL09892ERR343299
2332STDY5539150ERL0983ERR343298
2332STDY5539150ERL0983ERR343393
2332STDY5539149ERL0982ERR343392
2332STDY5539149ERL0982ERR343297
2332STDY5539148ERL094053ERR343391
2332STDY5539148ERL094053ERR343296
2332STDY5539147ERL09383ERR343295
2332STDY5539147ERL09383ERR343390
2332STDY5539146ERL091797ERR343294
2332STDY5539146ERL091797ERR343389
2332STDY5539145ERL091788ERR343293
2332STDY5539145ERL091788ERR343388
2332STDY5539144ERL091300ERR343292
2332STDY5539144ERL091300ERR343387
2332STDY5539143ERL091092ERR343291
2332STDY5539143ERL091092ERR343386
2332STDY5539142ERL08828ERR343290
2332STDY5539142ERL08828ERR343385
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2332STDY5539141ERL08758ERR343384
2332STDY5539140ERL08619ERR343288
2332STDY5539140ERL08619ERR343383
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2332STDY5539138ERL084047ERR343286
2332STDY5539138ERL084047ERR343381
2332STDY5539137ERL082759ERR343285
2332STDY5539137ERL082759ERR343380
2332STDY5539136ERL082444ERR343284
2332STDY5539136ERL082444ERR343379
2332STDY5539135ERL082408ERR343283
2332STDY5539135ERL082408ERR343378
2332STDY5539134ERL082356ERR343282
2332STDY5539134ERL082356ERR343377
2332STDY5539133ERL082325ERR343281
2332STDY5539133ERL082325ERR343376
2332STDY5539132ERL07434ERR343280
2332STDY5539132ERL07434ERR343375
2332STDY5539131ERL072973ERR343279
2332STDY5539131ERL072973ERR343374
2332STDY5539130ERL072830ERR343278
2332STDY5539130ERL072830ERR343373
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2332STDY5539128ERL07263ERR343276
2332STDY5539127ERL0661ERR343275
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2332STDY5539126ERL064553ERR343274
2332STDY5539126ERL064553ERR343369
2332STDY5539125ERL063424ERR343273
2332STDY5539125ERL063424ERR343368
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2332STDY5539121ERL052042ERR343364
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2332STDY5539119ERL043008ERR343267
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2332STDY5539118ERL042857ERR343266
2332STDY5539118ERL042857ERR343361
2332STDY5539117ERL041932ERR343265
2332STDY5539117ERL041932ERR343360
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2332STDY5539111ERL032952ERR343259
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2332STDY5539110ERL032330ERR343258
2332STDY5539110ERL032330ERR343353
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2332STDY5539109ERL032200ERR343257
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2332STDY5539101ERL021174ERR343249
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2332STDY5564632ty2-75ERR349522
2332STDY5564631ty1-60ERR349425
2332STDY5564631ty1-60ERR349521
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2332STDY5564614ty1-31ERR349421
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2332STDY5564591ty1-51ERR349510
2332STDY5564588ty2-127ERR349413
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2332STDY5564587ty2-111ERR349412
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2332STDY5564577ty2-80ERR349406
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2332STDY5564574ty1-16ERR349405
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2332STDY5564566ty1-10ERR349399
2332STDY5564563ty2-107ERR349398
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2332STDY5564560ty2-22ERR349395
2332STDY5564560ty2-22ERR349491
2332STDY5564559ty1-41ERR349394
2332STDY5564559ty1-41ERR349490
2332STDY5564550ty1-5ERR349393
2332STDY5564550ty1-5ERR349489
2332STDY5564548ty2-120ERR349392
2332STDY5564548ty2-120ERR349488
2332STDY5564546ty2-89ERR349391
2332STDY5564546ty2-89ERR349487
2332STDY5564543ty1-35ERR349390
2332STDY5564543ty1-35ERR349486
2332STDY5564542ty1-2ERR349389
2332STDY5564542ty1-2ERR349485
2332STDY5564539ipt41ERR349388
2332STDY5564539ipt41ERR349484
2332STDY5564537ct1-34ERR349387
2332STDY5564537ct1-34ERR349483
2332STDY5564536ct1-6ERR349386
2332STDY5564536ct1-6ERR349482
2332STDY5564530ct1-102ERR349385
2332STDY5564530ct1-102ERR349481
2332STDY5564527ty3-214ERR349384
2332STDY5564527ty3-214ERR349480
2332STDY5564521ct1-28ERR349479
2332STDY5564521ct1-28ERR349383
2332STDY5564520ct1-4ERR349478
2332STDY5564520ct1-4ERR349382
2332STDY5564512ct1-3ERR349381
2332STDY5564512ct1-3ERR349477
2332STDY5564504ct1-2ERR349380
2332STDY5564504ct1-2ERR349476
2332STDY5564496ct1-1ERR349379
2332STDY5564496ct1-1ERR349475
2332STDY5564494ty3-193ERR349378
2332STDY5564494ty3-193ERR349474
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2332STDY5564476ipt57ERR349376
2332STDY5564473ct1-17ERR349375
2332STDY5564473ct1-17ERR349471
2332STDY5564465ct1-16ERR349470
2332STDY5564465ct1-16ERR349374
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2332STDY5564461dty1-73ERR349469
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2332STDY5564458ct1-40ERR349468
2332STDY5564453dty1-72ERR349371
2332STDY5564453dty1-72ERR349467
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2332STDY5564449ct1-7ERR349466
2332STDY5564446ty2-152ERR349465
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2332STDY5564438dn171ERR349368
2332STDY5564438dn171ERR349464
2332STDY5564430dn61ERR349367
2332STDY5564430dn61ERR349463
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2332STDY5564422dn37ERR349366
2332STDY5564421dtc94ERR349461
2332STDY5564421dtc94ERR349365
2332STDY5564420dtc93ERR349364
2332STDY5564420dtc93ERR349460
2332STDY5564406dn189ERR349459
2332STDY5564406dn189ERR349363
2332STDY5564403dtc111ERR349362
2332STDY5564403dtc111ERR349458
2332STDY5564399dn160ERR349361
2332STDY5564399dn160ERR349457
2332STDY5564398dn19ERR349456
2332STDY5564398dn19ERR349360
2332STDY5564397dtc103ERR349359
2332STDY5564397dtc103ERR349455
2332STDY5564396dtc10ERR349358
2332STDY5564396dtc10ERR349454
2332STDY5564390dn18ERR349357
2332STDY5564390dn18ERR349453
2332STDY5564384dn162ERR349452
2332STDY5564384dn162ERR349356
2332STDY5564383dn58ERR349355
2332STDY5564383dn58ERR349451
2332STDY5564375dn93ERR349354
2332STDY5564375dn93ERR349450
2332STDY5564374dn86ERR349353
2332STDY5564374dn86ERR349449
2332STDY5564373dtc24ERR349352
2332STDY5564373dtc24ERR349448
2332STDY5564372dtc116ERR349351
2332STDY5564372dtc116ERR349447
2332STDY5564370dn136ERR349446
2332STDY5564370dn136ERR349350
2332STDY5564367dn121ERR349349
2332STDY5564367dn121ERR349445
2332STDY5564366dn63ERR349348
2332STDY5564366dn63ERR349444
2332STDY5564365dtc79ERR349443
2332STDY5564365dtc79ERR349347
2332STDY5564358dn14ERR349346
2332STDY5564358dn14ERR349442
2332STDY5564351dn191ERR349345
2332STDY5564351dn191ERR349441
2332STDY5564342dtc160ERR349344
2332STDY5564342dtc160ERR349440
2332STDY5564341BRD948ERR349343
2332STDY5564341BRD948ERR349439
2332STDY55643393540/3ERR349342
2332STDY55643393540/3ERR349438
2332STDY5564326dtc174ERR349341
2332STDY5564326dtc174ERR349437
2332STDY5564324M223ERR349340
2332STDY5564324M223ERR349436
2332STDY5564319np27ERR349339
2332STDY5564319np27ERR349435
2332STDY5564318dtc153ERR349434
2332STDY5564318dtc153ERR349338
2332STDY5564294dtc105ERR349433
2332STDY5564294dtc105ERR349337
2332STDY5564281np80ERR349432
2332STDY5564281np80ERR349336
2332STDY5564280np45ERR349335
2332STDY5564280np45ERR349431
2332STDY5564270dtc86ERR349430
2332STDY5564270dtc86ERR349334
2332STDY5564265np74ERR349333
2332STDY5564265np74ERR349429
2332STDY5564257np69ERR349332
2332STDY5564257np69ERR349428
2332STDY5564254dtc8ERR349331
2332STDY5564254dtc8ERR349427
2332STDY5564637ty2-155ERR349617
2332STDY5564637ty2-155ERR349712
2332STDY5564634ty2-104ERR349616
2332STDY5564634ty2-104ERR349711
2332STDY5564628ty2-134ERR349710
2332STDY5564628ty2-134ERR349615
2332STDY5564627ty2-118ERR349614
2332STDY5564627ty2-118ERR349709
2332STDY5564626ty2-103ERR349708
2332STDY5564626ty2-103ERR349613
2332STDY5564625ty2-87ERR349612
2332STDY5564625ty2-87ERR349707
2332STDY5564623ty1-58ERR349611
2332STDY5564623ty1-58ERR349706
2332STDY5564622ty1-33ERR349610
2332STDY5564622ty1-33ERR349705
2332STDY5564621ty2-153ERR349609
2332STDY5564621ty2-153ERR349704
2332STDY5564618ty2-102ERR349608
2332STDY5564618ty2-102ERR349703
2332STDY5564616ty2-72ERR349607
2332STDY5564616ty2-72ERR349702
2332STDY5564613ty2-150ERR349701
2332STDY5564613ty2-150ERR349606
2332STDY5564612ty2-132ERR349700
2332STDY5564612ty2-132ERR349605
2332STDY5564611ty2-115ERR349699
2332STDY5564611ty2-115ERR349604
2332STDY5564610ty2-101ERR349698
2332STDY5564610ty2-101ERR349603
2332STDY5564608ty2-71ERR349697
2332STDY5564608ty2-71ERR349602
2332STDY5564604ty2-131ERR349601
2332STDY5564604ty2-131ERR349696
2332STDY5564603ty2-114ERR349600
2332STDY5564603ty2-114ERR349695
2332STDY5564602ty2-100ERR349694
2332STDY5564602ty2-100ERR349599
2332STDY5564598ty1-29ERR349598
2332STDY5564598ty1-29ERR349693
2332STDY5564597ty2-146ERR349597
2332STDY5564597ty2-146ERR349692
2332STDY5564590ty1-26ERR349691
2332STDY5564590ty1-26ERR349596
2332STDY5564589ty2-144ERR349690
2332STDY5564589ty2-144ERR349595
2332STDY5564579ty2-110ERR349594
2332STDY5564579ty2-110ERR349689
2332STDY5564572ty2-123ERR349593
2332STDY5564572ty2-123ERR349688
2332STDY5564557ty2-139ERR349592
2332STDY5564557ty2-139ERR349687
2332STDY5564554ty2-90ERR349591
2332STDY5564554ty2-90ERR349686
2332STDY5564552ty2-17ERR349685
2332STDY5564552ty2-17ERR349590
2332STDY5564551ty1-40ERR349589
2332STDY5564551ty1-40ERR349684
2332STDY5564545ty2-76ERR349588
2332STDY5564545ty2-76ERR349683
2332STDY5564538ct1-103ERR349586
2332STDY5564538ct1-103ERR349681
2332STDY5564535ty3-215ERR349585
2332STDY5564535ty3-215ERR349680
2332STDY5564532dty1-67ERR349584
2332STDY5564532dty1-67ERR349679
2332STDY5564529ct1-33ERR349583
2332STDY5564529ct1-33ERR349678
2332STDY5564525dty1-93ERR349582
2332STDY5564525dty1-93ERR349677
2332STDY5564524dty1-58ERR349581
2332STDY5564524dty1-58ERR349676
2332STDY5564517dty1-91ERR349580
2332STDY5564517dty1-91ERR349675
2332STDY5564516dty1-46ERR349674
2332STDY5564516dty1-46ERR349579
2332STDY5564514ct1-65ERR349673
2332STDY5564514ct1-65ERR349578
2332STDY5564513ct1-27ERR349672
2332STDY5564513ct1-27ERR349577
2332STDY5564509dty1-89ERR349576
2332STDY5564509dty1-89ERR349671
2332STDY5564507as257ERR349575
2332STDY5564507as257ERR349670
2332STDY5564505ct1-24ERR349574
2332STDY5564505ct1-24ERR349669
2332STDY5564503ty3-212ERR349573
2332STDY5564503ty3-212ERR349668
2332STDY5564501dty1-88ERR349667
2332STDY5564501dty1-88ERR349572
2332STDY5564500ipt76ERR349571
2332STDY5564500ipt76ERR349666
2332STDY5564497ct1-23ERR349570
2332STDY5564497ct1-23ERR349665
2332STDY5564493dty1-86ERR349569
2332STDY5564493dty1-86ERR349664
2332STDY5564492ipt79ERR349568
2332STDY5564492ipt79ERR349663
2332STDY5564487ty3-208ERR349567
2332STDY5564487ty3-208ERR349662
2332STDY5564485dty1-83ERR349566
2332STDY5564485dty1-83ERR349661
2332STDY5564475as16ERR349660
2332STDY5564475as16ERR349565
2332STDY5564472ty3-253ERR349564
2332STDY5564472ty3-253ERR349659
2332STDY5564470ty2-170ERR349563
2332STDY5564470ty2-170ERR349658
2332STDY5564469dty1-75ERR349562
2332STDY5564469dty1-75ERR349657
2332STDY5564467ct1-109ERR349656
2332STDY5564467ct1-109ERR349561
2332STDY5564466ct1-45ERR349560
2332STDY5564466ct1-45ERR349655
2332STDY5564462ty2-166ERR349654
2332STDY5564462ty2-166ERR349559
2332STDY5564460ipt47ERR349558
2332STDY5564460ipt47ERR349653
2332STDY5564454ty2-160ERR349652
2332STDY5564454ty2-160ERR349557
2332STDY5564452ipt43ERR349556
2332STDY5564452ipt43ERR349651
2332STDY5564443dtc4ERR349555
2332STDY5564443dtc4ERR349650
2332STDY5564442dn59ERR349649
2332STDY5564442dn59ERR349554
2332STDY5564439dn28ERR349648
2332STDY5564439dn28ERR349553
2332STDY5564436dtc21ERR349552
2332STDY5564436dtc21ERR349647
2332STDY5564431dn20ERR349646
2332STDY5564431dn20ERR349551
2332STDY5564428dtc71ERR349550
2332STDY5564428dtc71ERR349645
2332STDY5564423dn57ERR349644
2332STDY5564423dn57ERR349549
2332STDY5564418dn108ERR349548
2332STDY5564418dn108ERR349643
2332STDY5564414dn12ERR349547
2332STDY5564414dn12ERR349642
2332STDY5564404dtc69ERR349546
2332STDY5564404dtc69ERR349641
2332STDY5564395dtc138ERR349545
2332STDY5564395dtc138ERR349640
2332STDY5564394dn91ERR349544
2332STDY5564394dn91ERR349639
2332STDY5564393dn109ERR349543
2332STDY5564393dn109ERR349638
2332STDY5564386dn11ERR349542
2332STDY5564386dn11ERR349637
2332STDY5564382dn10ERR349541
2332STDY5564382dn10ERR349636
2332STDY5564381dtc168ERR349540
2332STDY5564381dtc168ERR349635
2332STDY5564380dtc92ERR349539
2332STDY5564380dtc92ERR349634
2332STDY5564379dtc150ERR349538
2332STDY5564379dtc150ERR349633
2332STDY5564378dn110ERR349537
2332STDY5564378dn110ERR349632
2332STDY5564377dn15ERR349536
2332STDY5564377dn15ERR349631
2332STDY5564363dtc3ERR349535
2332STDY5564363dtc3ERR349630
2332STDY5564362dn45ERR349534
2332STDY5564362dn45ERR349629
2332STDY5564360dn163ERR349628
2332STDY5564360dn163ERR349533
2332STDY5564356dtc102ERR349532
2332STDY5564356dtc102ERR349627
2332STDY5564355dtc139ERR349531
2332STDY5564355dtc139ERR349626
2332STDY5564350dn149ERR349530
2332STDY5564350dn149ERR349625
2332STDY55643303302/3ERR349529
2332STDY55643303302/3ERR349624
2332STDY5564328np61ERR349528
2332STDY5564328np61ERR349623
2332STDY55643233069/3ERR349622
2332STDY55643233069/3ERR349527
2332STDY55643153080/3ERR349526
2332STDY55643153080/3ERR349621
2332STDY55643073525/3ERR349525
2332STDY55643073525/3ERR349620
2332STDY5564302dtc110ERR349524
2332STDY5564302dtc110ERR349619
2332STDY5564278dtc95ERR349523
2332STDY5564278dtc95ERR349618
2332STDY5564635ty2-119ERR352725
2332STDY5564635ty2-119ERR352884
2332STDY5564633ty2-88ERR352723
2332STDY5564633ty2-88ERR352883
2332STDY5564629ty2-154ERR352721
2332STDY5564629ty2-154ERR352882
2332STDY5564620ty2-133ERR352719
2332STDY5564620ty2-133ERR352881
2332STDY5564619ty2-116ERR352717
2332STDY5564619ty2-116ERR352880
2332STDY5564595ty2-113ERR352715
2332STDY5564595ty2-113ERR352879
2332STDY5564581ty2-143ERR352713
2332STDY5564581ty2-143ERR352878
2332STDY5564565ty2-141ERR352877
2332STDY5564565ty2-141ERR352711
2332STDY5564555ty2-106ERR352709
2332STDY5564555ty2-106ERR352876
2332STDY5564553ty2-77ERR352707
2332STDY5564553ty2-77ERR352875
2332STDY5564549ty2-138ERR352705
2332STDY5564549ty2-138ERR352874
2332STDY5564547ty2-105ERR352873
2332STDY5564547ty2-105ERR352703
2332STDY5564544ty1-61ERR352701
2332STDY5564544ty1-61ERR352872
2332STDY5564534ty3-199ERR352699
2332STDY5564534ty3-199ERR352871
2332STDY5564531ipt19ERR352697
2332STDY5564531ipt19ERR352870
2332STDY5564528ct1-5ERR352695
2332STDY5564528ct1-5ERR352869
2332STDY5564526ty3-218ERR352693
2332STDY5564526ty3-218ERR352868
2332STDY5564523ipt16ERR352691
2332STDY5564523ipt16ERR352867
2332STDY5564522ct1-69ERR352689
2332STDY5564522ct1-69ERR352866
2332STDY5564519ty3-213ERR352687
2332STDY5564519ty3-213ERR352865
2332STDY5564518ty3-197ERR352685
2332STDY5564518ty3-197ERR352864
2332STDY5564515as288ERR352683
2332STDY5564515as288ERR352863
2332STDY5564511ty3-222ERR352681
2332STDY5564511ty3-222ERR352862
2332STDY5564510ty3-196ERR352679
2332STDY5564510ty3-196ERR352861
2332STDY5564508ipt83ERR352677
2332STDY5564508ipt83ERR352860
2332STDY5564506ct1-72ERR352675
2332STDY5564506ct1-72ERR352859
2332STDY5564502ty3-194ERR352673
2332STDY5564502ty3-194ERR352858
2332STDY5564499as252ERR352857
2332STDY5564499as252ERR352671
2332STDY5564498ct1-70ERR352669
2332STDY5564498ct1-70ERR352856
2332STDY5564495ty3-211ERR352855
2332STDY5564495ty3-211ERR352667
2332STDY5564491as250ERR352665
2332STDY5564491as250ERR352854
2332STDY5564488ty3-269ERR352663
2332STDY5564488ty3-269ERR352853
2332STDY5564486ty3-191ERR352662
2332STDY5564486ty3-191ERR352852
2332STDY5564484ipt61ERR352661
2332STDY5564484ipt61ERR352850
2332STDY5564483as118ERR352848
2332STDY5564483as118ERR352659
2332STDY5564482ct1-66ERR352658
2332STDY5564482ct1-66ERR352846
2332STDY5564480ty3-254ERR352657
2332STDY5564480ty3-254ERR352844
2332STDY5564479ty3-207ERR352842
2332STDY5564479ty3-207ERR352656
2332STDY5564478ty2-173ERR352840
2332STDY5564478ty2-173ERR352655
2332STDY5564477dty1-80ERR352838
2332STDY5564477dty1-80ERR352654
2332STDY5564474ct1-52ERR352653
2332STDY5564474ct1-52ERR352836
2332STDY5564471ty3-206ERR352834
2332STDY5564471ty3-206ERR352652
2332STDY5564468ipt51ERR352832
2332STDY5564468ipt51ERR352651
2332STDY5564464ty3-243ERR352650
2332STDY5564464ty3-243ERR352830
2332STDY5564463ty3-205ERR352649
2332STDY5564463ty3-205ERR352828
2332STDY5564459ct1-107ERR352826
2332STDY5564459ct1-107ERR352648
2332STDY5564456ty3-226ERR352647
2332STDY5564456ty3-226ERR352824
2332STDY5564455ty3-202ERR352646
2332STDY5564455ty3-202ERR352822
2332STDY5564451ct1-105ERR352645
2332STDY5564451ct1-105ERR352820
2332STDY5564448ty3-224ERR352644
2332STDY5564448ty3-224ERR352818
2332STDY5564447ty3-201ERR352643
2332STDY5564447ty3-201ERR352816
2332STDY5564445dtc90ERR352642
2332STDY5564445dtc90ERR352814
2332STDY5564444dtc57ERR352812
2332STDY5564444dtc57ERR352641
2332STDY5564441dn123ERR352640
2332STDY5564441dn123ERR352810
2332STDY5564440dn149ERR352639
2332STDY5564440dn149ERR352808
2332STDY5564434dn148ERR352638
2332STDY5564434dn148ERR352806
2332STDY5564433dn176ERR352637
2332STDY5564433dn176ERR352804
2332STDY5564432dn21ERR352636
2332STDY5564432dn21ERR352802
2332STDY5564429dtc80ERR352800
2332STDY5564429dtc80ERR352635
2332STDY5564427dtc112ERR352634
2332STDY5564427dtc112ERR352798
2332STDY5564426dn89ERR352797
2332STDY5564426dn89ERR352633
2332STDY5564425dn22ERR352795</