Pseudomonas

Pseudomonads are ubiquitous organisms distributed widely in the environment, including the soil and water and in association with various living host organisms. There are representatives such as Pseudomonas aeruginosa that represent one of the most prevalent causes of opportunistic infections in humans and is the most common cause of eventually fatal, persistent respiratory infections in cystic fibrosis (CF) patients. Others such as Pseudomonas fluorescens represent a physiologically diverse species that contributes greatly to the turnover of organic matter and, while present in soil, is abundant on the surfaces of plant roots and leaves. Of the plant-colonizing strains, some isolates are known to positively affect plant health and nutrition. The mechanistic bases of these effects remain unclear, but are known to include the production of plant-growth hormones, the suppression of pathogens (especially fungi and oomycetes) detrimental to plant health via competitive and / or allelopathic effects, and the direct elicitation of plant defence responses.

Data Downloads

[Genome Research Limited]

To date we have determined the genome sequence of the Liverpool Epidemic Strain (LES) of P. aeruginosa and Pseudomonas fluorescens strain SBW25

Main Collaborators

C. Winstanley Division of Medical Microbiology and Genitourinary Medicine, University of Liverpool, Liverpool L69 3GA, United Kingdom

Stuart B. Levy Centre for Adaptation Genetics and Drug Resistance, Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.

Paul B. Rainey New Zealand Institute for Advanced Study, Massey University, Private Bag 102 904, North Shore Mail Centre, Auckland, New Zealand.

Mark W. Silby Centre for Adaptation Genetics and Drug Resistance, Department of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.

Published Genome Data

Pseudomonas aeruginosa

We have determined the genome sequence of Pseudomonas aeruginosa. The full annotation is available in the EMBL database with accession number FM209186. The genome is 6,601,757 bp in size with a G+C content of 66.3% and is available for searching on our Blast Server, or for download from our FTP site.

Shotgun and assembly data from these projects are available from our FTP site.


Pseudomonas fluorescens strain SBW25

We have determined the genome sequence of Pseudomonas fluorescens strain SBW2. The full annotation is available in the EMBL database with accession number AM181176. The genome is 6,722,540 bp in length, with an average G+C content of 60.5 %

We have also sequenced pQBR103, a plasmid from P. fluorescens. The full annotation is available in the EMBL database with accession number AM235768. The sequence is 425,094 bp with a G+C content of 53.15%.

Shotgun and assembly data from these projects are available from our FTP site.


BSAC Resistance Surveillance Project

This data is from bacterial isolates collected in the BSAC Resistance Surveillance Project. Please see bsacsurv.org for details and availability.

Studies

TraDIS investigating twitching mobility in Pseudomonas aeruginosa

Sample

Strain

Run Accession

PAO1fimLUnknownERR227110
PAK_S247TUnknownERR227109
PAK_S129TUnknownERR227108
PAK_S52TUnknownERR227107
PAK_S43TUnknownERR227106
PAK_S43UnknownERR227105
PAK_S10TUnknownERR227104
PAK_S10UnknownERR227103
PAKUnknownERR227102
PAO1Rev5UnknownERR227101
PAO1Rev4UnknownERR227100
PAO1Rev3UnknownERR227099
PAO1Rev2UnknownERR227098
LGM24UnknownERR516788
LGM24UnknownERR516855
LGM12UnknownERR516787
LGM12UnknownERR516854
ALH12UnknownERR516786
ALH12UnknownERR516853
LMN24UnknownERR516785
LMN24UnknownERR516852
LMN24UnknownERR516862
LMN12UnknownERR516784
LMN12UnknownERR516851
LGM23UnknownERR516850
LGM23UnknownERR516783
LGM11UnknownERR516782
LGM11UnknownERR516849
ALH11UnknownERR516781
ALH11UnknownERR516848
LMN23UnknownERR516780
LMN23UnknownERR516847
LMN11UnknownERR516846
LMN11UnknownERR516779
LGM22UnknownERR516778
LGM22UnknownERR516845
LGM10UnknownERR516777
LGM10UnknownERR516844
ALH10UnknownERR516776
ALH10UnknownERR516843
LMN22UnknownERR516842
LMN22UnknownERR516775
LMN22UnknownERR516861
LMN10UnknownERR516774
LMN10UnknownERR516841
LGM21UnknownERR516773
LGM21UnknownERR516840
LGM9UnknownERR516839
LGM9UnknownERR516772
ALH9UnknownERR516838
ALH9UnknownERR516771
LMN21UnknownERR516770
LMN21UnknownERR516837
LMN9UnknownERR516769
LMN9UnknownERR516836
LGM20UnknownERR516768
LGM20UnknownERR516835
LGM8UnknownERR516767
LGM8UnknownERR516834
ALH8UnknownERR516766
ALH8UnknownERR516833
LMN20UnknownERR516765
LMN20UnknownERR516832
LMN8UnknownERR516764
LMN8UnknownERR516831
LGM31UnknownERR516763
LGM31UnknownERR516830
LGM19UnknownERR516762
LGM19UnknownERR516829
LGM7UnknownERR516761
LGM7UnknownERR516828
ALH7UnknownERR516827
ALH7UnknownERR516760
LMN19UnknownERR516759
LMN19UnknownERR516826
LMN7UnknownERR516758
LMN7UnknownERR516825
LGM30UnknownERR516757
LGM30UnknownERR516824
LGM18UnknownERR516756
LGM18UnknownERR516823
LGM6UnknownERR516755
LGM6UnknownERR516822
ALH6UnknownERR516754
ALH6UnknownERR516821
LMN18UnknownERR516753
LMN18UnknownERR516820
LMN6UnknownERR516819
LMN6UnknownERR516752
LGM29UnknownERR516751
LGM29UnknownERR516818
LGM17UnknownERR516817
LGM17UnknownERR516750
LGM5UnknownERR516749
LGM5UnknownERR516816
ALH5UnknownERR516815
ALH5UnknownERR516748
LMN17UnknownERR516747
LMN17UnknownERR516814
LMN5UnknownERR516746
LMN5UnknownERR516813
LGM28UnknownERR516745
LGM28UnknownERR516812
LGM16UnknownERR516744
LGM16UnknownERR516811
LGM4UnknownERR516743
LGM4UnknownERR516810
ALH4UnknownERR516742
ALH4UnknownERR516809
LMN16UnknownERR516741
LMN16UnknownERR516808
LMN4UnknownERR516740
LMN4UnknownERR516807
LMN4UnknownERR516860
LMN4UnknownERR516874
LGM27UnknownERR516739
LGM27UnknownERR516806
LGM15UnknownERR516805
LGM15UnknownERR516738
LGM3UnknownERR516737
LGM3UnknownERR516804
ALH3UnknownERR516736
ALH3UnknownERR516803
LMN15UnknownERR516735
LMN15UnknownERR516802
LMN3UnknownERR516734
LMN3UnknownERR516801
LMN3UnknownERR516868
LMN3UnknownERR516864
LMN3UnknownERR516859
LMN3UnknownERR516873
LGM26UnknownERR516800
LGM26UnknownERR516733
LGM14UnknownERR516732
LGM14UnknownERR516799
LGM2UnknownERR516731
LGM2UnknownERR516798
ALH2UnknownERR516730
ALH2UnknownERR516797
LMN14UnknownERR516729
LMN14UnknownERR516796
LMN2UnknownERR516728
LMN2UnknownERR516795
LMN2UnknownERR516867
LMN2UnknownERR516863
LMN2UnknownERR516858
LMN2UnknownERR516857
LMN2UnknownERR516872
LGM25UnknownERR516727
LGM25UnknownERR516794
LGM13UnknownERR516793
LGM13UnknownERR516726
LGM1UnknownERR516725
LGM1UnknownERR516792
ALH1UnknownERR516724
ALH1UnknownERR516791
LMN13UnknownERR516723
LMN13UnknownERR516790
LMN1UnknownERR516789
LMN1UnknownERR516722
LMN1UnknownERR516856
LMN1UnknownERR516871
Gm_col_C1UnknownERR516870
Gm_col_C1UnknownERR516866
Gm_input_2UnknownERR516869
Gm_input_2UnknownERR516865
PA14_base_1UCBPP-PA14ERR525227
PA14_base_1UCBPP-PA14ERR525225
PA14_base_2UCBPP-PA14ERR525226
PA14_TM_3UCBPP-PA14ERR525224
PA14_TM_2UCBPP-PA14ERR525223
PA14_TM_1UCBPP-PA14ERR525222
PA14_cent_3UCBPP-PA14ERR525221
PA14_cent_2UCBPP-PA14ERR525220
PA14_cent_1UCBPP-PA14ERR525219

Mapping the evolution of Pseudomonas aeruginosa ST235 over 16 years in Russia and neighbouring countries

Sample

Strain

Run Accession

ILBPseudo5457655UnknownERR364170
ILBPseudo5457654UnknownERR364169
ILBPseudo5457653UnknownERR364168
ILBPseudo5457652UnknownERR364167
ILBPseudo5457651UnknownERR364166
ILBPseudo5457650UnknownERR364165
ILBPseudo5457649UnknownERR364164
ILBPseudo5457648UnknownERR364163
ILBPseudo5457645UnknownERR364162
ILBPseudo5457643UnknownERR364161
ILBPseudo5457640UnknownERR364160
ILBPseudo5457636UnknownERR364159
ILBPseudo5457633UnknownERR364158
ILBPseudo5457632UnknownERR364157
ILBPseudo5457630UnknownERR364156
ILBPseudo5457629UnknownERR364155
ILBPseudo5457628UnknownERR364154
ILBPseudo5457623UnknownERR364153
ILBPseudo5457603UnknownERR364152
ILBPseudo5457602UnknownERR364151
ILBPseudo5457601UnknownERR364150
ILBPseudo5457587UnknownERR364149
ILBPseudo5457559UnknownERR364148
ILBPseudo5457558UnknownERR364147
ILBPseudo5457555UnknownERR364146
ILBPseudo5457552UnknownERR364145
ILBPseudo5457548UnknownERR364144
ILBPseudo5457547UnknownERR364143
ILBPseudo5457546UnknownERR364142
ILBPseudo5457540UnknownERR364141
ILBPseudo5457521UnknownERR364140
ILBPseudo5457519UnknownERR364139
ILBPseudo5457513UnknownERR364138
ILBPseudo5457511UnknownERR364137
ILBPseudo5457510UnknownERR364136
ILBPseudo5457507UnknownERR364135
ILBPseudo5457506UnknownERR364134
ILBPseudo5457504UnknownERR364133
ILBPseudo5457503UnknownERR364132
ILBPseudo5457501UnknownERR364131
ILBPseudo5457500UnknownERR364130
ILBPseudo5457496UnknownERR364129
ILBPseudo5457492UnknownERR364128
ILBPseudo5457463UnknownERR364127
ILBPseudo5457458UnknownERR364126
ILBPseudo5457450UnknownERR364125
ILBPseudo5457449UnknownERR364124
ILBPseudo5457447UnknownERR364123
ILBPseudo5457446UnknownERR364122
ILBPseudo5457445UnknownERR364121
ILBPseudo5457443UnknownERR364120
ILBPseudo5457439UnknownERR364119
ILBPseudo5457435UnknownERR364118
ILBPseudo5457434UnknownERR364117
ILBPseudo5457433UnknownERR364116
ILBPseudo5457432UnknownERR364115
ILBPseudo5457431UnknownERR364114
ILBPseudo5457429UnknownERR364113
ILBPseudo5457427UnknownERR364112
ILBPseudo5457426UnknownERR364111
ILBPseudo5457425UnknownERR364110
ILBPseudo5457424UnknownERR364109
ILBPseudo5457418UnknownERR364108
ILBPseudo5457416UnknownERR364107
ILBPseudo5457410UnknownERR364106
ILBPseudo5457405UnknownERR364105
ILBPseudo5457403UnknownERR364104
ILBPseudo5457398UnknownERR364103
ILBPseudo5457395UnknownERR364102
ILBPseudo5457646UnknownERR364101
ILBPseudo5457644UnknownERR364100
ILBPseudo5457641UnknownERR364099
ILBPseudo5457639UnknownERR364098
ILBPseudo5457638UnknownERR364097
ILBPseudo5457637UnknownERR364096
ILBPseudo5457635UnknownERR364095
ILBPseudo5457634UnknownERR364094
ILBPseudo5457631UnknownERR364093
ILBPseudo5457627UnknownERR364092
ILBPseudo5457605UnknownERR364091
ILBPseudo5457600UnknownERR364090
ILBPseudo5457597UnknownERR364089
ILBPseudo5457592UnknownERR364088
ILBPseudo5457591UnknownERR364087
ILBPseudo5457590UnknownERR364086
ILBPseudo5457588UnknownERR364085
ILBPseudo5457557UnknownERR364084
ILBPseudo5457550UnknownERR364083
ILBPseudo5457549UnknownERR364082
ILBPseudo5457545UnknownERR364081
ILBPseudo5457541UnknownERR364080
ILBPseudo5457538UnknownERR364079
ILBPseudo5457537UnknownERR364078
ILBPseudo5457536UnknownERR364077
ILBPseudo5457532UnknownERR364076
ILBPseudo5457531UnknownERR364075
ILBPseudo5457530UnknownERR364074
ILBPseudo5457529UnknownERR364073
ILBPseudo5457528UnknownERR364072
ILBPseudo5457526UnknownERR364071
ILBPseudo5457520UnknownERR364070
ILBPseudo5457516UnknownERR364069
ILBPseudo5457515UnknownERR364068
ILBPseudo5457505UnknownERR364067
ILBPseudo5457502UnknownERR364066
ILBPseudo5457499UnknownERR364065
ILBPseudo5457498UnknownERR364064
ILBPseudo5457493UnknownERR364063
ILBPseudo5457491UnknownERR364062
ILBPseudo5457490UnknownERR364061
ILBPseudo5457456UnknownERR364060
ILBPseudo5457455UnknownERR364059
ILBPseudo5457454UnknownERR364058
ILBPseudo5457453UnknownERR364057
ILBPseudo5457451UnknownERR364056
ILBPseudo5457448UnknownERR364055
ILBPseudo5457442UnknownERR364054
ILBPseudo5457438UnknownERR364053
ILBPseudo5457436UnknownERR364052
ILBPseudo5457430UnknownERR364051
ILBPseudo5457428UnknownERR364050
ILBPseudo5457423UnknownERR364049
ILBPseudo5457422UnknownERR364048
ILBPseudo5457420UnknownERR364047
ILBPseudo5457417UnknownERR364046
ILBPseudo5457415UnknownERR364045
ILBPseudo5457414UnknownERR364044
ILBPseudo5457413UnknownERR364043
ILBPseudo5457411UnknownERR364042
ILBPseudo5457409UnknownERR364041
ILBPseudo5457408UnknownERR364040
ILBPseudo5457407UnknownERR364039
ILBPseudo5457406UnknownERR364038
ILBPseudo5457404UnknownERR364037
ILBPseudo5457400UnknownERR364036
ILBPseudo5457397UnknownERR364035
ILBPseudo5457396UnknownERR364034
ILBPseudo5457394UnknownERR364033
ILBPseudo5457647UnknownERR370103
ILBPseudo5457626UnknownERR370102
ILBPseudo5457625UnknownERR370101
ILBPseudo5457622UnknownERR370100
ILBPseudo5457621UnknownERR370099
ILBPseudo5457620UnknownERR370098
ILBPseudo5457619UnknownERR370097
ILBPseudo5457618UnknownERR370096
ILBPseudo5457617UnknownERR370095
ILBPseudo5457616UnknownERR370094
ILBPseudo5457615UnknownERR370093
ILBPseudo5457614UnknownERR370092
ILBPseudo5457613UnknownERR370091
ILBPseudo5457612UnknownERR370090
ILBPseudo5457611UnknownERR370089
ILBPseudo5457610UnknownERR370088
ILBPseudo5457609UnknownERR370087
ILBPseudo5457608UnknownERR370086
ILBPseudo5457607UnknownERR370085
ILBPseudo5457606UnknownERR370084
ILBPseudo5457604UnknownERR370083
ILBPseudo5457599UnknownERR370082
ILBPseudo5457598UnknownERR370081
ILBPseudo5457596UnknownERR370080
ILBPseudo5457595UnknownERR370079
ILBPseudo5457594UnknownERR370078
ILBPseudo5457593UnknownERR370077
ILBPseudo5457589UnknownERR370076
ILBPseudo5457586UnknownERR370075
ILBPseudo5457556UnknownERR370074
ILBPseudo5457554UnknownERR370073
ILBPseudo5457553UnknownERR370072
ILBPseudo5457551UnknownERR370071
ILBPseudo5457544UnknownERR370070
ILBPseudo5457543UnknownERR370069
ILBPseudo5457542UnknownERR370068
ILBPseudo5457539UnknownERR370067
ILBPseudo5457535UnknownERR370066
ILBPseudo5457534UnknownERR370065
ILBPseudo5457533UnknownERR370064
ILBPseudo5457527UnknownERR370063
ILBPseudo5457525UnknownERR370062
ILBPseudo5457524UnknownERR370061
ILBPseudo5457523UnknownERR370060
ILBPseudo5457522UnknownERR370059
ILBPseudo5457518UnknownERR370058
ILBPseudo5457517UnknownERR370057
ILBPseudo5457514UnknownERR370056
ILBPseudo5457512UnknownERR370055
ILBPseudo5457509UnknownERR370054
ILBPseudo5457508UnknownERR370053
ILBPseudo5457497UnknownERR370052
ILBPseudo5457495UnknownERR370051
ILBPseudo5457494UnknownERR370050
ILBPseudo5457462UnknownERR370049
ILBPseudo5457461UnknownERR370048
ILBPseudo5457460UnknownERR370047
ILBPseudo5457459UnknownERR370046
ILBPseudo5457457UnknownERR370045
ILBPseudo5457452UnknownERR370044
ILBPseudo5457444UnknownERR370043
ILBPseudo5457441UnknownERR370042
ILBPseudo5457440UnknownERR370041
ILBPseudo5457437UnknownERR370040
ILBPseudo5457421UnknownERR370039
ILBPseudo5457419UnknownERR370038
ILBPseudo5457412UnknownERR370037
ILBPseudo5457402UnknownERR370036
ILBPseudo5457401UnknownERR370035
ILBPseudo5457399UnknownERR370034

Pseudomonas aeruginosa genome sequencing study

Sample

Strain

Run Accession

2682STDY5583443ps2758ERR382060
2682STDY5583443ps2758ERR382141
2682STDY5583442ps2034ERR382059
2682STDY5583442ps2034ERR382140
2682STDY5583441ps1884ERR382058
2682STDY5583441ps1884ERR382139
2682STDY5583440ps1817ERR382057
2682STDY5583440ps1817ERR382138
2682STDY5583439ps1749ERR382056
2682STDY5583439ps1749ERR382137
2682STDY5583438ps1604ERR382055
2682STDY5583438ps1604ERR382136
2682STDY5583437ps1200ERR382054
2682STDY5583437ps1200ERR382135
2682STDY5583436ps1031ERR382053
2682STDY5583436ps1031ERR382134
2682STDY5583435ps658ERR382052
2682STDY5583435ps658ERR382133
2682STDY5583434ps148ERR382051
2682STDY5583434ps148ERR382132
2682STDY5583433ps145ERR382050
2682STDY5583433ps145ERR382131
2682STDY5583432ps112ERR382049
2682STDY5583432ps112ERR382130
2682STDY5583431ps29ERR382048
2682STDY5583431ps29ERR382129
2682STDY5583430ps781ERR382047
2682STDY5583430ps781ERR382128
2682STDY5583425ps2656ERR382046
2682STDY5583425ps2656ERR382127
2682STDY5583424ps2646ERR382045
2682STDY5583424ps2646ERR382126
2682STDY5583423ps2643ERR382044
2682STDY5583423ps2643ERR382125
2682STDY5583422ps2642ERR382043
2682STDY5583422ps2642ERR382124
2682STDY5583421ps2554ERR382042
2682STDY5583421ps2554ERR382123
2682STDY5583420ps2454ERR382041
2682STDY5583420ps2454ERR382122
2682STDY5583419ps2422ERR382040
2682STDY5583419ps2422ERR382121
2682STDY5583418ps2412ERR382039
2682STDY5583418ps2412ERR382120
2682STDY5583417ps2383ERR382038
2682STDY5583417ps2383ERR382119
2682STDY5583416ps2339ERR382037
2682STDY5583416ps2339ERR382118
2682STDY5583415ps2313ERR382036
2682STDY5583415ps2313ERR382117
2682STDY5583414ps2309ERR382035
2682STDY5583414ps2309ERR382116
2682STDY5583413ps2300ERR382034
2682STDY5583413ps2300ERR382115
2682STDY5583412ps2240ERR382033
2682STDY5583412ps2240ERR382114
2682STDY5583411ps2195ERR382032
2682STDY5583411ps2195ERR382113
2682STDY5583410ps2133ERR382112
2682STDY5583410ps2133ERR382031
2682STDY5583409ps2082ERR382030
2682STDY5583409ps2082ERR382111
2682STDY5583408ps2039ERR382110
2682STDY5583408ps2039ERR382029
2682STDY5583407ps1981ERR382028
2682STDY5583407ps1981ERR382109
2682STDY5583406ps1885ERR382027
2682STDY5583406ps1885ERR382108
2682STDY5583405ps1831ERR382107
2682STDY5583405ps1831ERR382026
2682STDY5583404ps1818ERR382025
2682STDY5583404ps1818ERR382106
2682STDY5583403ps1788ERR382105
2682STDY5583403ps1788ERR382024
2682STDY5583402ps1786ERR382023
2682STDY5583402ps1786ERR382104
2682STDY5583401ps1776ERR382022
2682STDY5583401ps1776ERR382103
2682STDY5583400ps1772ERR382021
2682STDY5583400ps1772ERR382102
2682STDY5583399ps1739ERR382020
2682STDY5583399ps1739ERR382101
2682STDY5583398ps1700ERR382100
2682STDY5583398ps1700ERR382019
2682STDY5583397ps1658ERR382018
2682STDY5583397ps1658ERR382099
2682STDY5583396ps1575ERR382017
2682STDY5583396ps1575ERR382098
2682STDY5583395ps1543ERR382016
2682STDY5583395ps1543ERR382097
2682STDY5583394ps1533ERR382015
2682STDY5583394ps1533ERR382096
2682STDY5583392ps1514ERR382014
2682STDY5583392ps1514ERR382095
2682STDY5583391ps1458ERR382013
2682STDY5583391ps1458ERR382094
2682STDY5583390ps1368ERR382012
2682STDY5583390ps1368ERR382093
2682STDY5583389ps1338ERR382011
2682STDY5583389ps1338ERR382092
2682STDY5583388ps1312ERR382091
2682STDY5583388ps1312ERR382010
2682STDY5583387ps1241ERR382009
2682STDY5583387ps1241ERR382090
2682STDY5583386ps1193ERR382008
2682STDY5583386ps1193ERR382089
2682STDY5583385ps1186ERR382088
2682STDY5583385ps1186ERR382007
2682STDY5583384ps1155ERR382006
2682STDY5583384ps1155ERR382087
2682STDY5583383ps1104ERR382086
2682STDY5583383ps1104ERR382005
2682STDY5583382ps1065ERR382004
2682STDY5583382ps1065ERR382085
2682STDY5583381ps1040ERR382003
2682STDY5583381ps1040ERR382084
2682STDY5583380ps920ERR382083
2682STDY5583380ps920ERR382002
2682STDY5583379ps918ERR382001
2682STDY5583379ps918ERR382082
2682STDY5583378ps863ERR382081
2682STDY5583378ps863ERR382000
2682STDY5583377ps839ERR381999
2682STDY5583377ps839ERR382080
2682STDY5583376ps835ERR382079
2682STDY5583376ps835ERR381998
2682STDY5583375ps832ERR382078
2682STDY5583375ps832ERR381997
2682STDY5583374ps830ERR381996
2682STDY5583374ps830ERR382077
2682STDY5583373ps814ERR381995
2682STDY5583373ps814ERR382076
2682STDY5583372ps810ERR381994
2682STDY5583372ps810ERR382075
2682STDY5583371ps805ERR381993
2682STDY5583371ps805ERR382074
2682STDY5583370ps802ERR381992
2682STDY5583370ps802ERR382073
2682STDY5583369ps801ERR381991
2682STDY5583369ps801ERR382072
2682STDY5583368ps787ERR382071
2682STDY5583368ps787ERR381990
2682STDY5583367ps687ERR382070
2682STDY5583367ps687ERR381989
2682STDY5583366ps400ERR381988
2682STDY5583366ps400ERR382069
2682STDY5583365ps382ERR381987
2682STDY5583365ps382ERR382068
2682STDY5583364ps330ERR381986
2682STDY5583364ps330ERR382067
2682STDY5583363ps144ERR381985
2682STDY5583363ps144ERR382066
2682STDY5583361ps138ERR382065
2682STDY5583361ps138ERR381984
2682STDY5583360ps90ERR381983
2682STDY5583360ps90ERR382064
2682STDY5583359ps84ERR381982
2682STDY5583359ps84ERR382063
2682STDY5583358ps24ERR381981
2682STDY5583358ps24ERR382062
2682STDY5557185PAE0165ERR369937
2682STDY5557181PAE0148ERR369936
2682STDY5557178PAE0132ERR369935
2682STDY5557173PAE0238ERR369934
2682STDY5557164PAE0231ERR369933
2682STDY5557163PAE0229ERR369932
2682STDY5557158PAE0224ERR369931
2682STDY5557143PAE0218ERR369930
2682STDY5557142PAE0217ERR369929
2682STDY5557139PAE0215ERR369928
2682STDY5557138PAE0214ERR369927
2682STDY5557135PAE0210ERR369926
2682STDY5557126PAE0201ERR369925
2682STDY5557125PAE0200ERR369924
2682STDY5557122PAE0197ERR369923
2682STDY5557121PAE0196ERR369922
2682STDY5557120PAE0195ERR369921
2682STDY5557119PAE0194ERR369920
2682STDY5557115PAE0190ERR369919
2682STDY5557114PAE0189ERR369918
2682STDY5557109PAE0183ERR369917
2682STDY5557103PAE0051ERR369916
2682STDY5557102PAE0052ERR369915
2682STDY5557101PAE0050ERR369914
2682STDY5557100PAE0049ERR369913
2682STDY5557097PAE0046ERR369912
2682STDY5557094PAE0043ERR369911
2682STDY5557088PAE0037ERR369910
2682STDY5557087PAE0036ERR369909
2682STDY5557084PAE0034ERR369908
2682STDY5557082PAE0029ERR369907
2682STDY5557079PAE0027ERR369906
2682STDY5557078PAE0026ERR369905
2682STDY5557076PAE0024ERR369904
2682STDY5557073PAE0021ERR369903
2682STDY5557071PAE0019ERR369902
2682STDY5557069PAE0017ERR369901
2682STDY5557064PAE0012ERR369900
2682STDY5557063PAE0011ERR369899
2682STDY5557062PAE0010ERR369898
2682STDY5557061PAE0009ERR369897
2682STDY5557059PAE0007ERR369896
2682STDY5557058PAE0005ERR369895
2682STDY5557057PAE0006ERR369894
2682STDY5557056PAE0004ERR369893
2682STDY5557055PAE0002ERR369892
2682STDY5557051PAE0159ERR369891
2682STDY5557050PAE0157ERR369890
2682STDY5557048PAE0155ERR369889
2682STDY5557047PAE0154ERR369888
2682STDY5557045PAE0152ERR369887
2682STDY5557044PAE0141ERR369886
2682STDY5557042PAE0150ERR369885
2682STDY5557037PAE0143ERR369884
2682STDY5557031PAE0135ERR369883
2682STDY5557027PAE0131ERR369882
2682STDY5557026PAE0129ERR369881
2682STDY5557024PAE0127ERR369880
2682STDY5557023PAE0126ERR369879
2682STDY5557022PAE0125ERR369878
2682STDY5557021PAE0124ERR369877
2682STDY5557019PAE0121ERR369876
2682STDY5557008PAE0110ERR369875
2682STDY5556997PAE0098ERR369874
2682STDY5556989PAE0089ERR369873
2682STDY5556985PAE0085ERR369872
2682STDY5556982PAE0082ERR369871
2682STDY5556979PAE0079ERR369870
2682STDY5556975PAE0075ERR369869
2682STDY5556971PAE0070ERR369868
2682STDY5556969PAE0068ERR369867
2682STDY5556968PAE0067ERR369866
2682STDY5556963PAE0062ERR369865
2682STDY5556959PAE0058ERR369864
2682STDY5556958PAE0057ERR369863
2682STDY5557183PAE0163ERR369862
2682STDY5557182PAE0031ERR369861
2682STDY5557179PAE0136ERR369860
2682STDY5557177PAE0130ERR369859
2682STDY5557175PAE0097ERR369858
2682STDY5557172PAE0237ERR369857
2682STDY5557171PAE0236ERR369856
2682STDY5557168PAE0233ERR369855
2682STDY5557166PAE0144ERR369854
2682STDY5557165PAE0232ERR369853
2682STDY5557154PAE0185ERR369852
2682STDY5557153PAE0230ERR369851
2682STDY5557148PAE0223ERR369850
2682STDY5557147PAE0222ERR369849
2682STDY5557141PAE0166ERR369848
2682STDY5557137PAE0212ERR369847
2682STDY5557136PAE0211ERR369846
2682STDY5557133PAE0167ERR369845
2682STDY5557131PAE0207ERR369844
2682STDY5557128PAE0203ERR369843
2682STDY5557127PAE0202ERR369842
2682STDY5557124PAE0199ERR369841
2682STDY5557123PAE0198ERR369840
2682STDY5557116PAE0191ERR369839
2682STDY5557108PAE0182ERR369838
2682STDY5557104PAE0053ERR369837
2682STDY5557098PAE0047ERR369836
2682STDY5557095PAE0044ERR369835
2682STDY5557093PAE0042ERR369834
2682STDY5557089PAE0038ERR369833
2682STDY5557086PAE0035ERR369832
2682STDY5557085PAE0168ERR369831
2682STDY5557081PAE0030ERR369830
2682STDY5557080PAE0028ERR369829
2682STDY5557077PAE0025ERR369828
2682STDY5557075PAE0023ERR369827
2682STDY5557072PAE0020ERR369826
2682STDY5557070PAE0018ERR369825
2682STDY5557068PAE0016ERR369824
2682STDY5557066PAE0014ERR369823
2682STDY5557054PAE0001ERR369822
2682STDY5557052PAE0161ERR369821
2682STDY5557049PAE0156ERR369820
2682STDY5557043PAE0151ERR369819
2682STDY5557041PAE0149ERR369818
2682STDY5557034PAE0140ERR369817
2682STDY5557033PAE0138ERR369816
2682STDY5557032PAE0137ERR369815
2682STDY5557030PAE0134ERR369814
2682STDY5557029PAE0133ERR369813
2682STDY5557028PAE0122ERR369812
2682STDY5557020PAE0123ERR369811
2682STDY5557018PAE0120ERR369810
2682STDY5557017PAE0119ERR369809
2682STDY5557015PAE0117ERR369808
2682STDY5557014PAE0116ERR369807
2682STDY5557013PAE0115ERR369806
2682STDY5557011PAE0113ERR369805
2682STDY5557009PAE0111ERR369804
2682STDY5557007PAE0109ERR369803
2682STDY5557003PAE0105ERR369802
2682STDY5557000PAE0101ERR369801
2682STDY5556999PAE0100ERR369800
2682STDY5556998PAE0099ERR369799
2682STDY5556996PAE0096ERR369798
2682STDY5556992PAE0092ERR369797
2682STDY5556991PAE0091ERR369796
2682STDY5556990PAE0090ERR369795
2682STDY5556988PAE0088ERR369794
2682STDY5556987PAE0087ERR369793
2682STDY5556980PAE0081ERR369792
2682STDY5556978PAE0078ERR369791
2682STDY5556970PAE0069ERR369790
2682STDY5556964PAE0063ERR369789
2682STDY5556960PAE0059ERR369788
2682STDY5557184PAE0164ERR363842
2682STDY5557180PAE0160ERR363841
2682STDY5557176PAE0104ERR363840
2682STDY5557174PAE0162ERR363839
2682STDY5557170PAE0235ERR363838
2682STDY5557169PAE0234ERR363837
2682STDY5557167PAE0139ERR363836
2682STDY5557162PAE0228ERR363835
2682STDY5557161PAE0227ERR363834
2682STDY5557160PAE0226ERR363833
2682STDY5557159PAE0225ERR363832
2682STDY5557157PAE0032ERR363831
2682STDY5557156PAE0003ERR363830
2682STDY5557155PAE0056ERR363829
2682STDY5557152PAE0206ERR363828
2682STDY5557150PAE0213ERR363827
2682STDY5557146PAE0221ERR363826
2682STDY5557145PAE0220ERR363825
2682STDY5557144PAE0219ERR363824
2682STDY5557140PAE0216ERR363823
2682STDY5557134PAE0209ERR363822
2682STDY5557132PAE0208ERR363821
2682STDY5557130PAE0205ERR363820
2682STDY5557129PAE0204ERR363819
2682STDY5557118PAE0193ERR363818
2682STDY5557117PAE0192ERR363817
2682STDY5557113PAE0188ERR363816
2682STDY5557112PAE0187ERR363815
2682STDY5557111PAE0186ERR363814
2682STDY5557110PAE0184ERR363813
2682STDY5557107PAE0181ERR363812
2682STDY5557106PAE0055ERR363811
2682STDY5557105PAE0054ERR363810
2682STDY5557099PAE0048ERR363809
2682STDY5557096PAE0045ERR363808
2682STDY5557092PAE0041ERR363807
2682STDY5557091PAE0040ERR363806
2682STDY5557090PAE0039ERR363805
2682STDY5557083PAE0033ERR363804
2682STDY5557074PAE0022ERR363803
2682STDY5557067PAE0015ERR363802
2682STDY5557065PAE0013ERR363801
2682STDY5557060PAE0008ERR363800
2682STDY5557046PAE0153ERR363799
2682STDY5557040PAE0147ERR363798
2682STDY5557039PAE0146ERR363797
2682STDY5557038PAE0145ERR363796
2682STDY5557036PAE0142ERR363795
2682STDY5557025PAE0128ERR363794
2682STDY5557016PAE0118ERR363793
2682STDY5557012PAE0114ERR363792
2682STDY5557010PAE0112ERR363791
2682STDY5557006PAE0108ERR363790
2682STDY5557005PAE0107ERR363789
2682STDY5557004PAE0106ERR363788
2682STDY5557002PAE0103ERR363787
2682STDY5557001PAE0102ERR363786
2682STDY5556995PAE0095ERR363785
2682STDY5556994PAE0094ERR363784
2682STDY5556993PAE0093ERR363783
2682STDY5556986PAE0086ERR363782
2682STDY5556984PAE0084ERR363781
2682STDY5556983PAE0083ERR363780
2682STDY5556981PAE0080ERR363779
2682STDY5556977PAE0077ERR363778
2682STDY5556976PAE0076ERR363777
2682STDY5556974PAE0074ERR363776
2682STDY5556973PAE0073ERR363775
2682STDY5556972PAE0072ERR363774
2682STDY5556967PAE0066ERR363773
2682STDY5556966PAE0065ERR363772
2682STDY5556965PAE0064ERR363771
2682STDY5556962PAE0061ERR363770
2682STDY5556961PAE0060ERR363769
2682STDY5583393ps1532ERR382142
2682STDY5583393ps1532ERR382061

NCTC 3000

Sample

Strain

Run Accession

3012STDY5802531NCTC10332ERR581139
3012STDY5802531NCTC10332ERR550479
3012STDY5802531NCTC10332ERR550484
  • Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa.

    Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, Parkhill J, Hancock RE, Brinkman FS and Levesque RC

    Genome research 2009;19;1;12-23

  • Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

    Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB and Thomson NR

    Genome biology 2009;10;5;R51

  • Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet.

    Tett A, Spiers AJ, Crossman LC, Ager D, Ciric L, Dow JM, Fry JC, Harris D, Lilley A, Oliver A, Parkhill J, Quail MA, Rainey PB, Saunders NJ, Seeger K, Snyder LA, Squares R, Thomas CM, Turner SL, Zhang XX, Field D and Bailey MJ

    The ISME journal 2007;1;4;331-40

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/ff8x4ttp