Klebsiella pneumoniae

K. pneumoniae is a Gram-negative bacillus of the family Enterobacteriaceae with a world-wide distribution causing disease in a highly diverse group of hosts including humans, animals and plants. Relatively little is known about the evolution of K. pneumoniae. K. pneumoniae is an important cause of human disease resulting in significant morbidity and mortality in the developed world and one of the most common causes of community acquired infections in Asia, causing diseases including pneumonia, liver abscess and septicemia. In developed countries, K. pneumoniae is typically a nosocomial pathogen responsible for sepsis, urinary tract infections and pneumonia K. pneumoniae is also a common veterinary pathogen, causing mastitis in dairy cows and an infection of the uterus in horses. Furthermore, K. pneumoniae is a plant endophyte, illustrating the broad host range of this bacterium. We are aiming to capture a snap shot of the global diversity held within this species and have put together a strain collection for sequencing accordingly.

Data Downloads

This project is ongoing and data for this organism will be made available in due course.

[Genome Research Limited]

Collaborators

Dick Strugnell Ph.D. (Prof) The Department of Microbiology & Immunology, The University of Melbourne, VIC AUSTRALIA

Heiman F.L. Wertheim, M.D. Ph.D. Oxford University Clinical Research Unit, National Institute of Infectious and Tropical Diseases, Bach Mai Hospital, Hanoi Viet Nam.

Kathryn Holt Ph.D. The Department of Microbiology & Immunology, The University of Melbourne, VIC AUSTRALIA

Stephen Baker Ph.D. OAK Leadership Fellow Wellcome Trust Major Overseas Programme Oxford University Clinical Research Unit The Hospital for Tropical Diseases 190 Ben Ham Tu, Quan 5 Ho Chi Minh City Vietnam

Ruth N. Zadoks, DVM, PhD Moredun Chair of Veterinary Epidemiology, Moredun Research Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh

Published Genome Data

The Sanger Institute has sequenced the genome of Klebsiella pneumoniae subsp. pneumoniae Ecl8. The chromosomal genome is available from EMBL/GenBank with accession number HF536482. Similarly, the plasmid is available with accession number HF536483.

Studies

Antimicrobial resistance modifiers studied by TraDIS

Sample

Strain

Run Accession

Ecl8_3_new_adapterEcl8ERR261857
Ecl8_5_new_adapterEcl8ERR261856
Ecl8_3Ecl8ERR261855
Ecl8_5Ecl8ERR261854
Klebsiella2_3UnknownERR349718
Klebsiella1_3UnknownERR349717
Klebsiella2_5UnknownERR349714
Klebsiella1_5UnknownERR349713
PolB2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467151
PolB2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467209
PolB1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467150
PolB1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467208
Amk2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467149
Amk2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467207
Amk1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467148
Amk1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467206
CTRL3_Ex2_KpKlebsiella pneumoniae Ecl8ERR467147
CTRL3_Ex2_KpKlebsiella pneumoniae Ecl8ERR467205
CTRL2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467146
CTRL2_Ex2_KpKlebsiella pneumoniae Ecl8ERR467204
CTRL1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467145
CTRL1_Ex2_KpKlebsiella pneumoniae Ecl8ERR467203
Tob2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467144
Tob2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467202
Tob1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467143
Tob1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467201
Tig2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467142
Tig2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467200
Tig1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467141
Tig1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467199
Mer2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467140
Mer2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467198
Mer1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467139
Mer1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467197
Dox2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467138
Dox2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467196
Dox1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467137
Dox1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467195
Col2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467136
Col2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467194
Col1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467135
Col1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467193
Cip2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467134
Cip2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467192
Cip1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467133
Cip1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467191
Cfx2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467132
Cfx2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467190
Cfx1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467131
Cfx1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467189
Ctx2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467130
Ctx2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467188
Ctx1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467129
Ctx1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467187
Arn3_Ex1_KpKlebsiella pneumoniae Ecl8ERR467128
Arn3_Ex1_KpKlebsiella pneumoniae Ecl8ERR467186
Arn2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467127
Arn2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467185
Arn1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467126
Arn1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467184
CTRL2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467125
CTRL2_Ex1_KpKlebsiella pneumoniae Ecl8ERR467183
CTRL1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467124
CTRL1_Ex1_KpKlebsiella pneumoniae Ecl8ERR467182
col2_KlebKlebsiella pneumoniae Ecl8ERR586500
col2_KlebKlebsiella pneumoniae Ecl8ERR586540
col1_KlebKlebsiella pneumoniae Ecl8ERR586499
col1_KlebKlebsiella pneumoniae Ecl8ERR586539
PolB2_KlebKlebsiella pneumoniae Ecl8ERR586538
PolB2_KlebKlebsiella pneumoniae Ecl8ERR586498
PolB1_KlebKlebsiella pneumoniae Ecl8ERR586497
PolB1_KlebKlebsiella pneumoniae Ecl8ERR586537
Tig2_KlebKlebsiella pneumoniae Ecl8ERR586496
Tig2_KlebKlebsiella pneumoniae Ecl8ERR586536
Tig1_KlebKlebsiella pneumoniae Ecl8ERR586495
Tig1_KlebKlebsiella pneumoniae Ecl8ERR586535
Amk2_KlebKlebsiella pneumoniae Ecl8ERR586494
Amk2_KlebKlebsiella pneumoniae Ecl8ERR586534
Amk1_KlebKlebsiella pneumoniae Ecl8ERR586493
Amk1_KlebKlebsiella pneumoniae Ecl8ERR586533
WT2_KlebKlebsiella pneumoniae Ecl8ERR586492
WT2_KlebKlebsiella pneumoniae Ecl8ERR586532
WT1_KlebKlebsiella pneumoniae Ecl8ERR586531
WT1_KlebKlebsiella pneumoniae Ecl8ERR586491

A local dissection of the longitudinal trends in the genetic diversity and antimicrobial resistance amongst Klebsiella pneumoniae and Enterobacter sp.

Sample

Strain

Run Accession

2485STDY5438250UnknownERR257654
2485STDY5438249UnknownERR257653
2485STDY5438248UnknownERR257652
2485STDY5438247UnknownERR257651
2485STDY5438246UnknownERR257650
2485STDY5438245UnknownERR257649
2485STDY5438244UnknownERR257648
2485STDY5438243UnknownERR257647
2485STDY5438242UnknownERR257646
2485STDY5438241UnknownERR257645
2485STDY5438240UnknownERR257644
2485STDY5438239UnknownERR257643
2485STDY5438238UnknownERR257642
2485STDY5438237UnknownERR257641
2485STDY5438236UnknownERR257640
2485STDY5438235UnknownERR257639
2485STDY5438234UnknownERR257638
2485STDY5438233UnknownERR257637
2485STDY5438232UnknownERR257636
2485STDY5438231UnknownERR257635
2485STDY5438230UnknownERR257634
2485STDY5438229UnknownERR257633
2485STDY5438228UnknownERR257632
2485STDY5438227UnknownERR257631
2485STDY5438226UnknownERR257630
2485STDY5438225UnknownERR257629
2485STDY5438224UnknownERR257628
2485STDY5438223UnknownERR257627
2485STDY5438222UnknownERR257626
2485STDY5438221UnknownERR257625
2485STDY5438220UnknownERR257624
2485STDY5438219UnknownERR257623
2485STDY5438218UnknownERR257622
2485STDY5438217UnknownERR257621
2485STDY5438216UnknownERR257620
2485STDY5438215UnknownERR257619
2485STDY5438214UnknownERR257618
2485STDY5438213UnknownERR257617
2485STDY5438212UnknownERR257616
2485STDY5438211UnknownERR257615
2485STDY5438210UnknownERR257614
2485STDY5438209UnknownERR257613
2485STDY5438208UnknownERR257612
2485STDY5438207UnknownERR257611
2485STDY5438206UnknownERR257610
2485STDY5438205UnknownERR257609
2485STDY5438204UnknownERR257608
2485STDY5438203UnknownERR257607
2485STDY5438198UnknownERR257602
2485STDY5438197UnknownERR257601
2485STDY5438196UnknownERR257600
2485STDY5438195UnknownERR257599
2485STDY5438194UnknownERR257598
2485STDY5438288UnknownERR257692
2485STDY5438287UnknownERR257691
2485STDY5438286UnknownERR257690
2485STDY5438285UnknownERR257689
2485STDY5438284UnknownERR257688
2485STDY5438283UnknownERR257687
2485STDY5438282UnknownERR257686
2485STDY5438281UnknownERR257685
2485STDY5438280UnknownERR257684
2485STDY5438279UnknownERR257683
2485STDY5438278UnknownERR257682
2485STDY5438277UnknownERR257681
2485STDY5438276UnknownERR257680
2485STDY5438275UnknownERR257679
2485STDY5438274UnknownERR257678
2485STDY5438273UnknownERR257677
2485STDY5438272UnknownERR257676
2485STDY5438271UnknownERR257675
2485STDY5438270UnknownERR257674
2485STDY5438269UnknownERR257673
2485STDY5438268UnknownERR257672
2485STDY5438267UnknownERR257671
2485STDY5438266UnknownERR257670
2485STDY5438265UnknownERR257669
2485STDY5438264UnknownERR257668
2485STDY5438263UnknownERR257667
2485STDY5438262UnknownERR257666
2485STDY5438261UnknownERR257665
2485STDY5438260UnknownERR257664
2485STDY5438259UnknownERR257663
2485STDY5438258UnknownERR257662
2485STDY5438257UnknownERR257661
2485STDY5438256UnknownERR257660
2485STDY5438255UnknownERR257659
2485STDY5438254UnknownERR257658
2485STDY5438253UnknownERR257657
2485STDY5438252UnknownERR257656
2485STDY5438251UnknownERR257655
2485STDY5438202UnknownERR257606
2485STDY5438201UnknownERR257605
2485STDY5438200UnknownERR257604
2485STDY5438199UnknownERR257603
2485STDY5478032UnknownERR304801
2485STDY5478031UnknownERR304800
2485STDY5478030UnknownERR304799
2485STDY5478029UnknownERR304798
2485STDY5478028UnknownERR304797
2485STDY5478027UnknownERR304796
2485STDY5478025UnknownERR304794
2485STDY5478024UnknownERR304793
2485STDY5478023UnknownERR304792
2485STDY5478022UnknownERR304791
2485STDY5478021UnknownERR304790
2485STDY5478020UnknownERR304789
2485STDY5478019UnknownERR304788
2485STDY5478017UnknownERR314567
2485STDY5478016UnknownERR314566
2485STDY5478015UnknownERR314565
2485STDY5478014UnknownERR314564
2485STDY5478013UnknownERR314563
2485STDY5478012UnknownERR314562
2485STDY5478011UnknownERR314561
2485STDY5478010UnknownERR314560
2485STDY5478008UnknownERR314558
2485STDY5478007UnknownERR314557
2485STDY5478006UnknownERR314556
2485STDY5478005UnknownERR314555
2485STDY5478004UnknownERR314554
2485STDY5478003UnknownERR314553
2485STDY5478001UnknownERR314551
2485STDY5478000UnknownERR314550
2485STDY5477999UnknownERR314549
2485STDY5477997UnknownERR314547
2485STDY5477996UnknownERR314546
2485STDY5477995UnknownERR314545
2485STDY5477994UnknownERR314544
2485STDY5477993UnknownERR314543
2485STDY5477992UnknownERR314542
2485STDY5477991UnknownERR314541
2485STDY5477988UnknownERR314538
2485STDY5477987UnknownERR314537
2485STDY5477986UnknownERR314536
2485STDY5477985UnknownERR314535
2485STDY5477984UnknownERR314534
2485STDY5477983UnknownERR314533
2485STDY5477982UnknownERR314532
2485STDY5477981UnknownERR314531
2485STDY5477980UnknownERR314530
2485STDY5477979UnknownERR314529
2485STDY5477978UnknownERR314528
2485STDY5477977UnknownERR314527
2485STDY5477975UnknownERR314525
2485STDY5477974UnknownERR314524
2485STDY5477973UnknownERR314523
2485STDY5477972UnknownERR314522
2485STDY5477970UnknownERR314520
2485STDY5477969UnknownERR314519
2485STDY5477965UnknownERR314515
2485STDY5477964UnknownERR314514
2485STDY5477956UnknownERR314506
2485STDY5477955UnknownERR314505
2485STDY5477951UnknownERR314501
2485STDY5477950UnknownERR314500
2485STDY5477949UnknownERR314499
2485STDY5477947UnknownERR314497
2485STDY5477945UnknownERR314495
2485STDY5477944UnknownERR314494
2485STDY5477941UnknownERR314491
2485STDY5477940UnknownERR314490
2485STDY5477939UnknownERR314489
2485STDY5438458UnknownERR314467
2485STDY5438457UnknownERR314466
2485STDY5438456UnknownERR314465
2485STDY5438450UnknownERR314459
2485STDY5438449UnknownERR314458
2485STDY5438448UnknownERR314457
2485STDY5438433UnknownERR314442
2485STDY5438432UnknownERR314441
2485STDY5438429UnknownERR314438
2485STDY5438428UnknownERR314437
2485STDY5438426UnknownERR314435
2485STDY5438423UnknownERR314432
2485STDY5438422UnknownERR314431
2485STDY5438412UnknownERR314421
2485STDY5438411UnknownERR314420
2485STDY5438410UnknownERR314419
2485STDY5438409UnknownERR314418
2485STDY5438408UnknownERR314417
2485STDY5438406UnknownERR314415
2485STDY5438403UnknownERR314412
2485STDY5438399UnknownERR314408
2485STDY5438398UnknownERR314407
2485STDY5438395UnknownERR314404
2485STDY5438394UnknownERR314403
2485STDY5438393UnknownERR314402
2485STDY5438392UnknownERR314401
2485STDY5438391UnknownERR314400
2485STDY5438384UnknownERR311562
2485STDY5438376UnknownERR311554
2485STDY5438356UnknownERR311534
2485STDY5438306UnknownERR311484
2485STDY5438305UnknownERR311483
2485STDY5438303UnknownERR311481
2485STDY5438302UnknownERR311480
2485STDY5438301UnknownERR311479
2485STDY5438300UnknownERR311478
2485STDY5438299UnknownERR311477
2485STDY5438298UnknownERR311476
2485STDY5438297UnknownERR311475
2485STDY5438296UnknownERR311474
2485STDY5438295UnknownERR311473
2485STDY5438294UnknownERR311472
2485STDY5438293UnknownERR311471
2485STDY5438292UnknownERR311470

Investigation of carbapenem resistant Klebsiella pneumoniae isolates associated with nosocomial epidemics in Spain.

Sample

Strain

Run Accession

2486STDY5438558UnknownERR264577
2486STDY5438557UnknownERR264576
2486STDY5438556UnknownERR264575
2486STDY5438555UnknownERR264574
2486STDY5438554UnknownERR264573
2486STDY5438553UnknownERR264572
2486STDY5438552UnknownERR264571
2486STDY5438551UnknownERR264570
2486STDY5438550UnknownERR264569
2486STDY5438549UnknownERR264568
2486STDY5438548UnknownERR264567
2486STDY5438547UnknownERR264566
2486STDY5438546UnknownERR264565
2486STDY5438545UnknownERR264564
2486STDY5438544UnknownERR264563
2486STDY5438543UnknownERR264562
2486STDY5438542UnknownERR264561
2486STDY5438541UnknownERR264560
2486STDY5438540UnknownERR264559
2486STDY5438539UnknownERR264558
2486STDY5438538UnknownERR264557
2486STDY5438537UnknownERR264556
2486STDY5438536UnknownERR264555
2486STDY5438535UnknownERR264554
2486STDY5438534UnknownERR264553
2486STDY5438533UnknownERR264552
2486STDY5438532UnknownERR264551
2486STDY5438531UnknownERR264550
2486STDY5438530UnknownERR264549
2486STDY5438529UnknownERR264548
2486STDY5438528UnknownERR264547
2486STDY5438527UnknownERR264546
2486STDY5438526UnknownERR264545
2486STDY5438525UnknownERR264544
2486STDY5438524UnknownERR264543
2486STDY5438523UnknownERR264542
2486STDY5438522UnknownERR264541
2486STDY5438521UnknownERR264540
2486STDY5438520UnknownERR264539
2486STDY5438519UnknownERR264538
2486STDY5438518UnknownERR264537
2486STDY5438517UnknownERR264536
2486STDY5438516UnknownERR264535
2486STDY5438515UnknownERR264534
2486STDY5438514UnknownERR264533
2486STDY5438513UnknownERR264532
2486STDY5438512UnknownERR264531
2486STDY5438511UnknownERR264530
2486STDY5438510UnknownERR264529
2486STDY5438509UnknownERR264528
2486STDY5438508UnknownERR264527
2486STDY5438507UnknownERR264526
2486STDY5438505UnknownERR264524
2486STDY5438504UnknownERR264523
2486STDY5438503UnknownERR264522
2486STDY5438502UnknownERR264521
2486STDY5438501UnknownERR264520
2486STDY5438500UnknownERR264519
2486STDY5438498UnknownERR264517
2486STDY5438497UnknownERR264516
2486STDY5438495UnknownERR264514
2486STDY5438494UnknownERR264513
2486STDY5438493UnknownERR264512
2486STDY5438491UnknownERR264510
2486STDY5438490UnknownERR264509
2486STDY5438487UnknownERR264506
2486STDY5438486UnknownERR264505
2486STDY5438485UnknownERR264504
2486STDY5438484UnknownERR264503
2486STDY5438506UnknownERR264525
2486STDY5438499UnknownERR264518
2486STDY5438492UnknownERR264511
2486STDY5438496UnknownERR264515
2486STDY5438489UnknownERR264508
2486STDY5438488UnknownERR264507
2486STDY5438483UnknownERR264502
2486STDY5438482UnknownERR264501
2486STDY5438653UnknownERR298863
2486STDY5438652UnknownERR298862
2486STDY5438651UnknownERR298861
2486STDY5438650UnknownERR298860
2486STDY5438649UnknownERR298859
2486STDY5438648UnknownERR298858
2486STDY5438647UnknownERR298857
2486STDY5438646UnknownERR298856
2486STDY5438645UnknownERR298855
2486STDY5438644UnknownERR298854
2486STDY5438643UnknownERR298853
2486STDY5438642UnknownERR298852
2486STDY5438641UnknownERR298851
2486STDY5438640UnknownERR298850
2486STDY5438639UnknownERR298849
2486STDY5438638UnknownERR298848
2486STDY5438637UnknownERR298847
2486STDY5438636UnknownERR298846
2486STDY5438635UnknownERR298845
2486STDY5438634UnknownERR298844
2486STDY5438633UnknownERR298843
2486STDY5438632UnknownERR298842
2486STDY5438631UnknownERR298841
2486STDY5438630UnknownERR298840
2486STDY5438629UnknownERR298839
2486STDY5438628UnknownERR298838
2486STDY5438627UnknownERR298837
2486STDY5438626UnknownERR298836
2486STDY5438625UnknownERR298835
2486STDY5438624UnknownERR298834
2486STDY5438623UnknownERR298833
2486STDY5438622UnknownERR298832
2486STDY5438621UnknownERR298831
2486STDY5438620UnknownERR298830
2486STDY5438619UnknownERR298829
2486STDY5438618UnknownERR298828
2486STDY5438617UnknownERR298827
2486STDY5438616UnknownERR298826
2486STDY5438615UnknownERR298825
2486STDY5438614UnknownERR298824
2486STDY5438613UnknownERR298823
2486STDY5438612UnknownERR298822
2486STDY5438611UnknownERR298821
2486STDY5438610UnknownERR298820
2486STDY5438609UnknownERR298819
2486STDY5438608UnknownERR298818
2486STDY5438607UnknownERR298817
2486STDY5438606UnknownERR298816
2486STDY5438605UnknownERR298815
2486STDY5438604UnknownERR298814
2486STDY5438603UnknownERR298813
2486STDY5438602UnknownERR298812
2486STDY5438601UnknownERR298811
2486STDY5438600UnknownERR298810
2486STDY5438599UnknownERR298809
2486STDY5438598UnknownERR298808
2486STDY5438597UnknownERR298807
2486STDY5438596UnknownERR298806
2486STDY5438595UnknownERR298805
2486STDY5438594UnknownERR298804
2486STDY5438593UnknownERR298803
2486STDY5438592UnknownERR298802
2486STDY5438591UnknownERR298801
2486STDY5438590UnknownERR298800
2486STDY5438589UnknownERR298799
2486STDY5438588UnknownERR298798
2486STDY5438587UnknownERR298797
2486STDY5438586UnknownERR298796
2486STDY5438585UnknownERR298795
2486STDY5438584UnknownERR298794
2486STDY5438583UnknownERR298793
2486STDY5438582UnknownERR298792
2486STDY5438581UnknownERR298791
2486STDY5438580UnknownERR298790
2486STDY5438579UnknownERR298789
2486STDY5438578UnknownERR298788

Molecular epidemiology of Klebsiella pneumoniae invasive isolates from Kilifi

Sample

Strain

Run Accession

2512STDY5462768UnknownERR315197
2512STDY5462767UnknownERR315196
2512STDY5462766UnknownERR315195
2512STDY5462765UnknownERR315194
2512STDY5462764UnknownERR315193
2512STDY5462763UnknownERR315192
2512STDY5462762UnknownERR315191
2512STDY5462761UnknownERR315190
2512STDY5462760UnknownERR315189
2512STDY5462759UnknownERR315188
2512STDY5462758UnknownERR315187
2512STDY5462757UnknownERR315186
2512STDY5462756UnknownERR315185
2512STDY5462755UnknownERR315184
2512STDY5462754UnknownERR315183
2512STDY5462753UnknownERR315182
2512STDY5462752UnknownERR315181
2512STDY5462751UnknownERR315180
2512STDY5462750UnknownERR315179
2512STDY5462749UnknownERR315178
2512STDY5462748UnknownERR315177
2512STDY5462747UnknownERR315176
2512STDY5462746UnknownERR315175
2512STDY5462745UnknownERR315174
2512STDY5462744UnknownERR315173
2512STDY5462743UnknownERR315172
2512STDY5462742UnknownERR315171
2512STDY5462741UnknownERR315170
2512STDY5462740UnknownERR315169
2512STDY5462739UnknownERR315168
2512STDY5462738UnknownERR315167
2512STDY5462737UnknownERR315166
2512STDY5462736UnknownERR315165
2512STDY5462735UnknownERR315164
2512STDY5462734UnknownERR315163
2512STDY5462733UnknownERR315162
2512STDY5462732UnknownERR315161
2512STDY5462731UnknownERR315160
2512STDY5462730UnknownERR315159
2512STDY5462729UnknownERR315158
2512STDY5462728UnknownERR315157
2512STDY5462727UnknownERR315156
2512STDY5462726UnknownERR315155
2512STDY5462725UnknownERR315154
2512STDY5462724UnknownERR315153
2512STDY5462723UnknownERR315152
2512STDY5462722UnknownERR315151
2512STDY5462721UnknownERR315150
2512STDY5462720UnknownERR315149
2512STDY5462719UnknownERR315148
2512STDY5462718UnknownERR315147
2512STDY5462717UnknownERR315146
2512STDY5462716UnknownERR315145
2512STDY5462715UnknownERR315144
2512STDY5462714UnknownERR315143
2512STDY5462713UnknownERR315142
2512STDY5462712UnknownERR315141
2512STDY5462711UnknownERR315140
2512STDY5462710UnknownERR315139
2512STDY5462709UnknownERR315138
2512STDY5462708UnknownERR315137
2512STDY5462707UnknownERR315136
2512STDY5462706UnknownERR315135
2512STDY5462705UnknownERR315134
2512STDY5462704UnknownERR315133
2512STDY5462703UnknownERR315132
2512STDY5462702UnknownERR315131
2512STDY5462701UnknownERR315130
2512STDY5462700UnknownERR315129
2512STDY5462699UnknownERR315128
2512STDY5462698UnknownERR315127
2512STDY5462697UnknownERR315126
2512STDY5462696UnknownERR315125
2512STDY5462695UnknownERR315124
2512STDY5462694UnknownERR315123
2512STDY5462693UnknownERR315122
2512STDY5462692UnknownERR315121
2512STDY5462690UnknownERR315119
2512STDY5462689UnknownERR315118
2512STDY5462688UnknownERR315117
2512STDY5462687UnknownERR315116
2512STDY5462686UnknownERR315115
2512STDY5462685UnknownERR315114
2512STDY5462684UnknownERR315113
2512STDY5462683UnknownERR315112
2512STDY5462682UnknownERR315111
2512STDY5462681UnknownERR315110
2512STDY5462680UnknownERR315109
2512STDY5462678UnknownERR315107
2512STDY5462677UnknownERR315106
2512STDY5462676UnknownERR315105
2512STDY5462675UnknownERR315104
2512STDY5462674UnknownERR315103
2512STDY5468816UnknownERR319592
2512STDY5468815UnknownERR319591
2512STDY5468814UnknownERR319590
2512STDY5468813UnknownERR319589
2512STDY5468812UnknownERR319588
2512STDY5468811UnknownERR319587
2512STDY5468810UnknownERR319586
2512STDY5468809UnknownERR319585
2512STDY5468807UnknownERR319583
2512STDY5468806UnknownERR319582
2512STDY5468805UnknownERR319581
2512STDY5468804UnknownERR319580
2512STDY5468803UnknownERR319579
2512STDY5468802UnknownERR319578
2512STDY5468801UnknownERR319577
2512STDY5468800UnknownERR319576
2512STDY5468799UnknownERR319575
2512STDY5468798UnknownERR319574
2512STDY5468797UnknownERR319573
2512STDY5468796UnknownERR319572
2512STDY5468795UnknownERR319571
2512STDY5468794UnknownERR319570
2512STDY5468793UnknownERR319569
2512STDY5468792UnknownERR319568
2512STDY5468791UnknownERR319567
2512STDY5468790UnknownERR319566
2512STDY5468789UnknownERR319565
2512STDY5468788UnknownERR319564
2512STDY5468787UnknownERR319563
2512STDY5468786UnknownERR319562
2512STDY5468785UnknownERR319561
2512STDY5468783UnknownERR319559
2512STDY5468782UnknownERR319558
2512STDY5468781UnknownERR319557
2512STDY5468780UnknownERR319556
2512STDY5468779UnknownERR319555
2512STDY5468730UnknownERR319506
2512STDY5468729UnknownERR319505
2512STDY5468728UnknownERR319504
2512STDY5468727UnknownERR319503
2512STDY5468778UnknownERR319554
2512STDY5468777UnknownERR319553
2512STDY5468776UnknownERR319552
2512STDY5468773UnknownERR319549
2512STDY5468771UnknownERR319547
2512STDY5468770UnknownERR319546
2512STDY5468769UnknownERR319545
2512STDY5468768UnknownERR319544
2512STDY5468767UnknownERR319543
2512STDY5468766UnknownERR319542
2512STDY5468765UnknownERR319541
2512STDY5468764UnknownERR319540
2512STDY5468763UnknownERR319539
2512STDY5468762UnknownERR319538
2512STDY5468761UnknownERR319537
2512STDY5468760UnknownERR319536
2512STDY5468759UnknownERR319535
2512STDY5468758UnknownERR319534
2512STDY5468757UnknownERR319533
2512STDY5468756UnknownERR319532
2512STDY5468755UnknownERR319531
2512STDY5468754UnknownERR319530
2512STDY5468753UnknownERR319529
2512STDY5468752UnknownERR319528
2512STDY5468751UnknownERR319527
2512STDY5468750UnknownERR319526
2512STDY5468749UnknownERR319525
2512STDY5468748UnknownERR319524
2512STDY5468747UnknownERR319523
2512STDY5468746UnknownERR319522
2512STDY5468745UnknownERR319521
2512STDY5468744UnknownERR319520
2512STDY5468743UnknownERR319519
2512STDY5468742UnknownERR319518
2512STDY5468741UnknownERR319517
2512STDY5468740UnknownERR319516
2512STDY5468739UnknownERR319515
2512STDY5468738UnknownERR319514
2512STDY5468737UnknownERR319513
2512STDY5468736UnknownERR319512
2512STDY5468735UnknownERR319511
2512STDY5468734UnknownERR319510
2512STDY5468733UnknownERR319509
2512STDY5468731UnknownERR319507
2512STDY5468726UnknownERR319502
2512STDY5468725UnknownERR319501
2512STDY5468724UnknownERR319500
2512STDY5468723UnknownERR319499
2512STDY5468722UnknownERR319498
51443UnknownERR323226
51398UnknownERR323225
50941UnknownERR323224
50449UnknownERR323223
50334UnknownERR323222
50183UnknownERR323221
50154UnknownERR323220
50230UnknownERR323219

Nosocomial Klebsiella pneumoniae with a high mortality rate in Kathmandu, Nepal

Sample

Strain

Run Accession

610_kpUnknownERR317539
587_kpUnknownERR317538
528_kpUnknownERR317537
478_kpUnknownERR317536
442_kpUnknownERR317535
316_kpUnknownERR317534
146_kpUnknownERR317533
133_kpUnknownERR317532
128_kpUnknownERR317531
85_kpUnknownERR317530
79_kpUnknownERR317529
18_kpUnknownERR317528
2598STDY5539388UnknownERR349842
2598STDY5539387UnknownERR349841
2598STDY5539386UnknownERR349840
2598STDY5539385UnknownERR349839
2598STDY5539384UnknownERR349838
2598STDY5539383UnknownERR349837
2598STDY5539382UnknownERR349836
2598STDY5539381UnknownERR349835
2598STDY5539380UnknownERR349834
2598STDY5539379UnknownERR349833
2598STDY5539378UnknownERR349832
2598STDY5539377UnknownERR349831
2598STDY5539376UnknownERR349830
2598STDY5539375UnknownERR349829
2598STDY5539374UnknownERR349828
2598STDY5539373UnknownERR349827
2598STDY5539372UnknownERR349826
2598STDY5539371UnknownERR349825
2598STDY5539370UnknownERR349824
2598STDY5539369UnknownERR349823
2598STDY5539368UnknownERR349822
2598STDY5539367UnknownERR349821
2598STDY5539366UnknownERR349820
2598STDY5539365UnknownERR349819
2598STDY5539364UnknownERR349818
2598STDY5539363UnknownERR349817
2598STDY5539362UnknownERR349816
2598STDY5539361UnknownERR349815
2598STDY5539360UnknownERR349814
2598STDY5539359UnknownERR349813
2598STDY5539358UnknownERR349812
2598STDY5539357UnknownERR349811
2598STDY5539356UnknownERR349810
2598STDY5539355UnknownERR349809
2598STDY5539354UnknownERR349808
2598STDY5539353UnknownERR349807
2598STDY5539352UnknownERR349806
2598STDY5539351UnknownERR349805
2598STDY5539350UnknownERR349804
2598STDY5539349UnknownERR349803
2598STDY5539348UnknownERR349802
2598STDY5539347UnknownERR349801
2598STDY5539346UnknownERR349800
2598STDY5539345UnknownERR349799
2598STDY5539344UnknownERR349798
2598STDY5539343UnknownERR349797
2598STDY5539342UnknownERR349796
2598STDY5539341UnknownERR349795
2598STDY5539340UnknownERR349794
2598STDY5539339UnknownERR349793
2598STDY5539338UnknownERR349792
2598STDY5539337UnknownERR349791
2598STDY5539336UnknownERR349790
2598STDY5539335UnknownERR349789
2598STDY5539334UnknownERR349788
2598STDY5539333UnknownERR349787
2598STDY5539332UnknownERR349786
2598STDY5539331UnknownERR349785
2598STDY5539330UnknownERR349784
2598STDY5539329UnknownERR349783
2598STDY5539328UnknownERR349782
2598STDY5539327UnknownERR349781
2598STDY5539326UnknownERR349780
2598STDY5539325UnknownERR349779
2598STDY5539324UnknownERR349778
2598STDY5539323UnknownERR349777
2598STDY5539322UnknownERR349776
2598STDY5539321UnknownERR349775
2598STDY5539320UnknownERR349774
2598STDY5539319UnknownERR349773
2598STDY5539318UnknownERR349772
2598STDY5539317UnknownERR349771
2598STDY5539316UnknownERR349770
2598STDY5539315UnknownERR349769
2598STDY5539314UnknownERR349768
2598STDY5539313UnknownERR349767
2598STDY5539312UnknownERR349766
2598STDY5539311UnknownERR349765
2598STDY5539310UnknownERR349764
2598STDY5539309UnknownERR349763
2598STDY5539308UnknownERR349762
2598STDY5539307UnknownERR349761
2598STDY5539306UnknownERR349760
2598STDY5539305UnknownERR349759
2598STDY5539304UnknownERR349758
2598STDY5539303UnknownERR349757
2598STDY5539302UnknownERR349756
2598STDY5539301UnknownERR349755
2598STDY5539300UnknownERR349754
2598STDY5539299UnknownERR349753
2598STDY5539298UnknownERR349752
2598STDY5539297UnknownERR349751
2598STDY5539296UnknownERR349750
2598STDY5539296UnknownERR374553
2598STDY5539295UnknownERR349749
2598STDY5539294UnknownERR349748
2598STDY5539293UnknownERR349747
2598STDY5539401UnknownERR349855
2598STDY5539400UnknownERR349854
2598STDY5539399UnknownERR349853
2598STDY5539398UnknownERR349852
2598STDY5539397UnknownERR349851
2598STDY5539396UnknownERR349850
2598STDY5539395UnknownERR349849
2598STDY5539394UnknownERR349848
2598STDY5539393UnknownERR349847
2598STDY5539392UnknownERR349846
2598STDY5539391UnknownERR349845
2598STDY5539390UnknownERR349844
2598STDY5539389UnknownERR349843

Multi Drug Resistant Gram Negative Rods (MDR-GNR) sequencing study

Sample

Strain

Run Accession

2880STDY5682690MDR1214ERR474559
2880STDY5682689MDR1213ERR474558
2880STDY5682687MDR1209ERR474557
2880STDY5682682MDR1204ERR474553
2880STDY5682679MDR1200ERR474552
2880STDY5682678MDR1199ERR474551
2880STDY5682677MDR1198ERR474550
2880STDY5682674MDR1194ERR474548
2880STDY5682673MDR1193ERR474547
2880STDY5682669MDR1189ERR474545
2880STDY5682668MDR1188ERR474544
2880STDY5682667MDR1187ERR474543
2880STDY5682665MDR1184ERR474541
2880STDY5682662MDR1181ERR474540
2880STDY5682661MDR1180ERR474539
2880STDY5682660MDR1179ERR474538
2880STDY5682658MDR1175ERR474537
2880STDY5682652MDR1168ERR474535
2880STDY5682651MDR1167ERR474534
2880STDY5682650MDR1166ERR474533
2880STDY5682649MDR1165ERR474532
2880STDY5682646MDR1162ERR474531
2880STDY5682644MDR1160ERR474530
2880STDY5682643MDR1158ERR474529
2880STDY5682642MDR1157ERR474528
2880STDY5682640MDR1155ERR474527
2880STDY5682639MDR1154ERR474526
2880STDY5682638MDR1152ERR474525
2880STDY5682637MDR1151ERR474524
2880STDY5682636MDR1150ERR474523
2880STDY5682634MDR1148ERR474522
2880STDY5682632MDR1146ERR474521
2880STDY5682631MDR1145ERR474520
2880STDY5682630MDR1144ERR474519
2880STDY5682629MDR1143ERR474518
2880STDY5682628MDR1142ERR474517
2880STDY5682627MDR1141ERR474516
2880STDY5682625MDR1139ERR474514
2880STDY5682624MDR1134ERR474513
2880STDY5682623MDR1133ERR474512
2880STDY5682618MDR1126ERR474510
2880STDY5682615MDR1122ERR474509
2880STDY5682614MDR1121ERR474508
2880STDY5682613MDR1120ERR474507
2880STDY5682609MDR1115ERR474504
2880STDY5682608MDR1114ERR474503
2880STDY5682607MDR1113ERR474502
2880STDY5682606MDR1112ERR474501
2880STDY5682605MDR1111ERR474500
2880STDY5682601MDR1105ERR474498
2880STDY5682600MDR1104ERR474497
2880STDY5682599MDR1103ERR474496
2880STDY5682597MDR1101ERR474494
2880STDY5682596MDR1100ERR474493
2880STDY5682595MDR1099ERR474492
2880STDY5682594MDR1098ERR474491
2880STDY5682593MDR1096ERR474490
2880STDY5682590MDR1085ERR474489
2880STDY5682589MDR1083ERR474488
2880STDY5682588MDR1081ERR474487
2880STDY5682587MDR1080ERR474486
2880STDY5682585MDR1092ERR474485
2880STDY5682584MDR1091ERR474484
2880STDY5682583MDR1090ERR474483
2880STDY5682582MDR1088ERR474482
2880STDY5682581MDR1087ERR474481
2880STDY5682580MDR1078ERR474480
2880STDY5682579MDR1077ERR474479
2880STDY5682577MDR1074ERR474478
2880STDY5682575MDR1072ERR474477
2880STDY5682574MDR1071ERR474476
2880STDY5682573MDR1070ERR474475
2880STDY5682572MDR1069ERR474474
2880STDY5682570MDR1067ERR474472
2880STDY5682569MDR1066ERR474471
2880STDY5682568MDR1065ERR474470
2880STDY5682567MDR1063ERR474469
2880STDY5682566MDR1062ERR474468
2880STDY5682562MDR1057ERR474467
2880STDY5682791MDR1211ERR486472
2880STDY5682789MDR0991ERR486470
2880STDY5682788MDR1079ERR486469
2880STDY5682787MDR1186ERR486468
2880STDY5682785MDR1178ERR486467
2880STDY5682784MDR1127ERR486466
2880STDY5682783MDR1171ERR486465
2880STDY5682782MDR1056ERR486464
2880STDY5682781MDR1137ERR486463
2880STDY5682780MDR1136ERR486462
2880STDY5682779MDR1135ERR486461
2880STDY5682778MDR1299ERR486460
2880STDY5682777MDR1298ERR486459
2880STDY5682776MDR1297ERR486458
2880STDY5682775MDR1296ERR486457
2880STDY5682774MDR1295ERR486456
2880STDY5682773MDR1294ERR486455
2880STDY5682772MDR1293ERR486454
2880STDY5682771MDR1292ERR486453
2880STDY5682770MDR1290ERR486452
2880STDY5682769MDR1289ERR486451
2880STDY5682768MDR1288ERR486450
2880STDY5682767MDR1287ERR486449
2880STDY5682766MDR1286ERR486448
2880STDY5682765MDR1285ERR486447
2880STDY5682764MDR1284ERR486446
2880STDY5682763MDR1283ERR486445
2880STDY5682762MDR1282ERR486444
2880STDY5682761MDR1281ERR486443
2880STDY5682760MDR1280ERR486442
2880STDY5682759MDR1279ERR486441
2880STDY5682758MDR1278ERR486440
2880STDY5682757MDR1277ERR486439
2880STDY5682756MDR1276ERR486438
2880STDY5682755MDR1275ERR486437
2880STDY5682754MDR1274ERR486436
2880STDY5682753MDR1273ERR486435
2880STDY5682752MDR1272ERR486434
2880STDY5682751MDR1271ERR486433
2880STDY5682750MDR1270ERR486432
2880STDY5682749MDR1269ERR486431
2880STDY5682748MDR1268ERR486430
2880STDY5682747MDR1267ERR486429
2880STDY5682746MDR1266ERR486428
2880STDY5682745MDR1265ERR486427
2880STDY5682744MDR1264ERR486426
2880STDY5682742MDR1262ERR486424
2880STDY5682741MDR1261ERR486423
2880STDY5682740MDR1260ERR486422
2880STDY5682739MDR1259ERR486421
2880STDY5682738MDR1258ERR486420
2880STDY5682737MDR1257ERR486419
2880STDY5682736MDR1255ERR486418
2880STDY5682735MDR1254ERR486417
2880STDY5682734MDR1253ERR486416
2880STDY5682733MDR1252ERR486415
2880STDY5682732MDR1251ERR486414
2880STDY5682731MDR1250ERR486413
2880STDY5682730MDR1249ERR486412
2880STDY5682729MDR1248ERR486411
2880STDY5682728MDR1247ERR486410
2880STDY5682727MDR1246ERR486409
2880STDY5682726MDR1245ERR486408
2880STDY5682725MDR1244ERR486407
2880STDY5682724MDR1243ERR486406
2880STDY5682723MDR1241ERR486405
2880STDY5682722MDR1239ERR486404
2880STDY5682721MDR1238ERR486403
2880STDY5682720MDR1236ERR486402
2880STDY5682719MDR1235ERR486401
2880STDY5682718MDR1234ERR486400
2880STDY5682716MDR1196ERR486399
2880STDY5682715MDR1108ERR486398
2880STDY5682712MDR1082ERR486397
2880STDY5682711MDR1075ERR486396
2880STDY5682709MDR1215ERR486394
2880STDY5682708MDR1212ERR486393
2880STDY5682706MDR1225ERR486392
2880STDY5682704MDR1223ERR486391
2880STDY5682703MDR1222ERR486390
2880STDY5682702MDR1221ERR486389
2880STDY5682701MDR1220ERR486388
2880STDY5682700MDR1219ERR486387
2880STDY5682697MDR1232ERR486386
2880STDY5682696MDR1231ERR486385
2880STDY5682695MDR1230ERR486384
2880STDY5682694MDR1229ERR486383
2880STDY5682692MDR1227ERR486381
2880STDY5682561MDR1055ERR486379
2880STDY5682560MDR1054ERR486378
2880STDY5682559MDR1045ERR486377
2880STDY5682558MDR1044ERR486376
2880STDY5682556MDR1052ERR486375
2880STDY5682555MDR1051ERR486374
2880STDY5682553MDR1049ERR486372
2880STDY5682552MDR1048ERR486371
2880STDY5682549MDR1041ERR486370
2880STDY5682548MDR1040ERR486369
2880STDY5682547MDR1039ERR486368
2880STDY5682546MDR1038ERR486367
2880STDY5682544MDR1036ERR486366
2880STDY5682543MDR1035ERR486365
2880STDY5682540MDR1032ERR486362
2880STDY5682539MDR1031ERR486361
2880STDY5682538MDR1030ERR486360
2880STDY5682536MDR1012ERR486359
2880STDY5682535MDR0995ERR486358
2880STDY5682533MDR1020ERR486356
2880STDY5682530MDR0987ERR486353
2880STDY5682529MDR0967ERR486352
2880STDY5682528MDR0952ERR486351
2880STDY5682527MDR1017ERR486350
2880STDY5682526MDR1010ERR486349
2880STDY5682515MDR1028ERR486347
2880STDY5682514MDR1027ERR486346
2880STDY5682513MDR1026ERR486345
2880STDY5682511MDR1024ERR486343
2880STDY5682507MDR1019ERR486342
2880STDY5682503MDR1014ERR486338
2880STDY5682502MDR1011ERR486337
2880STDY5682500MDR1008ERR486336
2880STDY5682499MDR1007ERR486335
2880STDY5682497MDR1005ERR486333
2880STDY5682496MDR1004ERR486332
2880STDY5682494MDR1001ERR486330
2880STDY5682491MDR0998ERR486328
2880STDY5682489MDR0996ERR486326
2880STDY5682487MDR0993ERR486324
2880STDY5682486MDR0992ERR486323
2880STDY5682485MDR0990ERR486322
2880STDY5682484MDR0989ERR486321
2880STDY5682483MDR0986ERR486320
2880STDY5682481MDR0984ERR486318
2880STDY5682480MDR0983ERR486317
2880STDY5682478MDR0981ERR486316
2880STDY5682477MDR0980ERR486315
2880STDY5682476MDR0979ERR486314
2880STDY5682475MDR0978ERR486313
2880STDY5682474MDR0977ERR486312
2880STDY5682473MDR0976ERR486311
2880STDY5682472MDR0975ERR486310
2880STDY5682469MDR0972ERR486307
2880STDY5682467MDR0970ERR486305
2880STDY5682466MDR0969ERR486304
2880STDY5682465MDR0968ERR486303
2880STDY5682464MDR0966ERR486302
2880STDY5682463MDR0965ERR486301
2880STDY5682462MDR0964ERR486300
2880STDY5682461MDR0963ERR486299
2880STDY5682460MDR0962ERR486298
2880STDY5682459MDR0961ERR486297
2880STDY5682457MDR0959ERR486296
2880STDY5682454MDR0956ERR486294
2880STDY5682453MDR0955ERR486293
2880STDY5682452MDR0954ERR486292
2880STDY5682451MDR0953ERR486291
2880STDY5682449MDR0949ERR486290
2880STDY5682448MDR0948ERR486289
2880STDY5682447MDR0947ERR486288
2880STDY5682445MDR0945ERR486286
2880STDY5682443MDR0943ERR486285
2880STDY5682442MDR0942ERR486284
2880STDY5682439MDR0938ERR486282
2880STDY5682437MDR0936ERR486280
2880STDY5682432MDR0931ERR486275
2880STDY5682431MDR0930ERR486274
2880STDY5682430MDR0929ERR486273
2880STDY5682714MDR1089ERR486804
2880STDY5682713MDR1084ERR486803
2880STDY5682707MDR1064ERR486802
2880STDY5682705MDR1224ERR486801
2880STDY5682699MDR1218ERR486800
2880STDY5682698MDR1233ERR486799
2880STDY5682688MDR1210ERR486798
2880STDY5682680MDR1202ERR486795
2880STDY5682676MDR1197ERR486794
2880STDY5682671MDR1191ERR486793
2880STDY5682670MDR1190ERR486792
2880STDY5682664MDR1183ERR486791
2880STDY5682663MDR1182ERR486790
2880STDY5682659MDR1177ERR486789
2880STDY5682657MDR1174ERR486788
2880STDY5682656MDR1173ERR486787
2880STDY5682655MDR1172ERR486786
2880STDY5682654MDR1170ERR486785
2880STDY5682648MDR1164ERR486784
2880STDY5682647MDR1163ERR486783
2880STDY5682645MDR1161ERR486782
2880STDY5682641MDR1156ERR486781
2880STDY5682635MDR1149ERR486780
2880STDY5682633MDR1147ERR486779
2880STDY5682620MDR1129ERR486778
2880STDY5682619MDR1128ERR486777
2880STDY5682617MDR1125ERR486776
2880STDY5682616MDR1123ERR486775
2880STDY5682612MDR1119ERR486774
2880STDY5682604MDR1110ERR486773
2880STDY5682603MDR1109ERR486772
2880STDY5682592MDR1095ERR486771
2880STDY5682586MDR1093ERR486770
2880STDY5682578MDR1076ERR486769
2880STDY5682576MDR1073ERR486768
2880STDY5682565MDR1061ERR486767
2880STDY5682564MDR1059ERR486766
2880STDY5682557MDR1042ERR486764
2880STDY5682551MDR1047ERR486763
2880STDY5682550MDR1046ERR486762
2880STDY5682545MDR1037ERR486761
2880STDY5682537MDR1013ERR486760
2880STDY5682510MDR1023ERR486759
2880STDY5682509MDR1022ERR486758
2880STDY5682508MDR1021ERR486757
2880STDY5682501MDR1009ERR486756
2880STDY5682492MDR0999ERR486755
2880STDY5682479MDR0982ERR486754
2880STDY5682458MDR0960ERR486753
2880STDY5682450MDR0951ERR486751
2880STDY5682444MDR0944ERR486750
2880STDY5682441MDR0941ERR486749
2880STDY5682812MDR0304ERR486519
2880STDY5682811MDR1240ERR486518
2880STDY5682810MDR1242ERR486517
2880STDY5682808MDR1138ERR486515
2880STDY5682807MDR1086ERR486514
2880STDY5682806MDR0950ERR486513
2880STDY5682805MDR1237ERR486512
2880STDY5682804MDR1291ERR486511
2880STDY5682803MDR1256ERR486510
2880STDY5682801MDR1116ERR486508
2880STDY5682800MDR1159ERR486507
2880STDY5682799MDR1132ERR486506
2880STDY5682797MDR1060ERR486505
2880STDY5682796MDR1097ERR486504
2880STDY5682794MDR1106ERR486502
2880STDY5682793MDR1130ERR486501
2880STDY5682792MDR1153ERR486500
2880STDY5700003MDR1094ERR502555
2880STDY5682798MDR1124ERR497024

Klebsiella colistin resistance with RNAseq

Sample

Strain

Run Accession

EM22D5CAUnknownERR576156
EM22D5CAUnknownERR576140
207M12D5colUnknownERR576155
207M12D5colUnknownERR576139
207M12D5CAABUnknownERR576154
207M12D5CAABUnknownERR576138
207M12D3colUnknownERR576153
207M12D3colUnknownERR576137
207M12D3CAABUnknownERR576152
207M12D3CAABUnknownERR576136
207M12D0UnknownERR576151
207M12D0UnknownERR576135
202M12D5colUnknownERR576150
202M12D5colUnknownERR576134
202M12D5CAABUnknownERR576149
202M12D5CAABUnknownERR576133
202M12D3colUnknownERR576148
202M12D3colUnknownERR576132
202M12D3CAABUnknownERR576147
202M12D3CAABUnknownERR576131
202M12D0UnknownERR576146
202M12D0UnknownERR576130
EM22D5colUnknownERR576145
EM22D5colUnknownERR576129
EM22D5CAABUnknownERR576144
EM22D5CAABUnknownERR576128
EM22D3colUnknownERR576143
EM22D3colUnknownERR576127
EM22D3CAABUnknownERR576142
EM22D3CAABUnknownERR576126
EM22D0UnknownERR576141
EM22D0UnknownERR576125
EM21D5CAUnknownERR576188
EM21D5CAUnknownERR576172
207M11D5colUnknownERR576187
207M11D5colUnknownERR576171
207M11D5CAABUnknownERR576186
207M11D5CAABUnknownERR576170
207M11D3colUnknownERR576185
207M11D3colUnknownERR576169
207M11D3CAABUnknownERR576184
207M11D3CAABUnknownERR576168
207M11D0UnknownERR576183
207M11D0UnknownERR576167
202M11D5colUnknownERR576182
202M11D5colUnknownERR576166
202M11D5CAABUnknownERR576181
202M11D5CAABUnknownERR576165
202M11D3colUnknownERR576180
202M11D3colUnknownERR576164
202M11D3CAABUnknownERR576179
202M11D3CAABUnknownERR576163
202M11D0UnknownERR576178
202M11D0UnknownERR576162
EM21D5colUnknownERR576177
EM21D5colUnknownERR576161
EM21D5CAABUnknownERR576176
EM21D5CAABUnknownERR576160
EM21D3colUnknownERR576175
EM21D3colUnknownERR576159
EM21D3CAABUnknownERR576174
EM21D3CAABUnknownERR576158
EM21D0UnknownERR576173
EM21D0UnknownERR576157

Whole genome sequencing of colistin resistant Klebsiella and Acinetobacter

Sample

Strain

Run Accession

2952STDY5749047Klebsiella pneumoniae RH201207ERR564223
2952STDY5749046Klebsiella pneumoniae RH201202ERR564222
2952STDY5749045Klebsiella pneumoniae Ecl8ERR564221
2952STDY5749019Klebsiella pneumoniae RH201208ERR564195
2952STDY5749018Klebsiella pneumoniae RH201207ERR564194
2952STDY5749017Klebsiella pneumoniae RH201206ERR564193
2952STDY5749016Klebsiella pneumoniae RH201205ERR564192
2952STDY5749015Klebsiella pneumoniae RH201204ERR564191
2952STDY5749014Klebsiella pneumoniae RH201203ERR564190
2952STDY5749013Klebsiella pneumoniae RH201202ERR564189
2952STDY5749012Klebsiella pneumoniae RH201201ERR564188
2952STDY5749011Klebsiella pneumoniae RH201207ERR564187
2952STDY5749010Klebsiella pneumoniae RH201207ERR564186
2952STDY5749009Klebsiella pneumoniae RH201202ERR564185
2952STDY5749008Klebsiella pneumoniae RH201202ERR564184
2952STDY5749007Klebsiella pneumoniae Ecl8ERR564183
2952STDY5749006Klebsiella pneumoniae Ecl8ERR564182
2952STDY5749005Klebsiella pneumoniae RH201207ERR564181
2952STDY5749004Klebsiella pneumoniae RH201207ERR564180
2952STDY5749003Klebsiella pneumoniae RH201202ERR564179
2952STDY5749002Klebsiella pneumoniae RH201202ERR564178
2952STDY5749001Klebsiella pneumoniae Ecl8ERR564177
2952STDY5749000Klebsiella pneumoniae Ecl8ERR564176
2952STDY5748999Klebsiella pneumoniae RH201207ERR564175
2952STDY5748998Klebsiella pneumoniae RH201207ERR564174
2952STDY5748997Klebsiella pneumoniae RH201202ERR564173
2952STDY5748996Klebsiella pneumoniae RH201202ERR564172
2952STDY5748995Klebsiella pneumoniae Ecl8ERR564171
2952STDY5748994Klebsiella pneumoniae Ecl8ERR564170
2952STDY5748993Klebsiella pneumoniae RH201207ERR564169
2952STDY5748992Klebsiella pneumoniae RH201207ERR564168
2952STDY5748991Klebsiella pneumoniae RH201202ERR564167
2952STDY5748990Klebsiella pneumoniae RH201202ERR564166
2952STDY5748989Klebsiella pneumoniae Ecl8ERR564165
2952STDY5748988Klebsiella pneumoniae Ecl8ERR564164
2952STDY5748987Klebsiella pneumoniae RH201207ERR564163
2952STDY5748986Klebsiella pneumoniae RH201207ERR564162
2952STDY5748985Klebsiella pneumoniae RH201202ERR564161
2952STDY5748984Klebsiella pneumoniae RH201202ERR564160
2952STDY5748983Klebsiella pneumoniae Ecl8ERR564159
2952STDY5748982Klebsiella pneumoniae Ecl8ERR564158
2952STDY5748981Klebsiella pneumoniae RH201207ERR564157
2952STDY5748980Klebsiella pneumoniae RH201207ERR564156
2952STDY5748979Klebsiella pneumoniae RH201202ERR564155
2952STDY5748978Klebsiella pneumoniae RH201202ERR564154
2952STDY5748977Klebsiella pneumoniae Ecl8ERR564153
2952STDY5748976Klebsiella pneumoniae Ecl8ERR564152
2952STDY5748975Klebsiella pneumoniae RH201207ERR564151
2952STDY5748974Klebsiella pneumoniae RH201207ERR564150
2952STDY5748973Klebsiella pneumoniae RH201202ERR564149
2952STDY5748972Klebsiella pneumoniae RH201202ERR564148
2952STDY5748971Klebsiella pneumoniae Ecl8ERR564147
2952STDY5748970Klebsiella pneumoniae Ecl8ERR564146
2952STDY5748969Klebsiella pneumoniae RH201207ERR564145
2952STDY5748968Klebsiella pneumoniae RH201207ERR564144
2952STDY5748967Klebsiella pneumoniae RH201202ERR564143
2952STDY5748966Klebsiella pneumoniae RH201202ERR564142
2952STDY5748965Klebsiella pneumoniae Ecl8ERR564141
2952STDY5748964Klebsiella pneumoniae Ecl8ERR564140
2952STDY5748963Klebsiella pneumoniae RH201207ERR564139
2952STDY5748962Klebsiella pneumoniae RH201207ERR564138
2952STDY5748961Klebsiella pneumoniae RH201202ERR564137
2952STDY5748960Klebsiella pneumoniae RH201202ERR564136
2952STDY5748959Klebsiella pneumoniae Ecl8ERR564135
2952STDY5748958Klebsiella pneumoniae Ecl8ERR564134

Klebsiella pneumoniae diversity

Sample

Strain

Run Accession

SKP000008AJ002ERR024817
SKP000025AJ048ERR024821
SKP000026AJ049ERR024822
SKP000028AJ054ERR024823
SKP000009AJ006ERR024824
SKP000011AJ012ERR024825
SKP000016AJ026ERR024826
SKP000017AJ027ERR024827
SKP000019AJ031ERR024828
SKP000020AJ033ERR024818
SKP000021AJ034ERR024819
SKP000023AJ038ERR024820
SKP000029AJ055ERR024830
SKP000053AJ135ERR024834
SKP000055AJ146ERR024835
SKP000057AJ148ERR024836
SKP000030AJ056ERR024837
SKP000033AJ064ERR024838
SKP000038AJ082ERR024839
SKP000039AJ083ERR024840
SKP000040AJ086ERR024841
SKP000042AJ094ERR024831
SKP000043AJ097ERR024832
SKP000044AJ099ERR024833
SKP000061AJ155ERR024843
SKP000077AJ210ERR024847
SKP000078AJ211ERR024848
SKP000079AJ212ERR024849
SKP000062AJ156ERR024850
SKP000063AJ158ERR024851
SKP000068AJ170ERR024852
SKP000071AJ182ERR024853
SKP000072AJ188ERR024854
SKP000073AJ196ERR024844
SKP000075AJ205ERR024845
SKP000076AJ208ERR024846
SKP000081AJ214ERR025098
SKP000099AJ292ERR025102
SKP000101AJ299ERR025103
SKP000102AJ303ERR025104
SKP000083AJ218ERR025105
SKP000084AJ220ERR025106
SKP000085AJ229ERR025107
SKP000088AJ256ERR025108
SKP000094AJ278ERR025109
SKP000095AJ281ERR025099
SKP000097AJ289ERR025100
SKP000098AJ290ERR025101
SKP00011008-049BERR025670
SKP00011271MERR025673
SKP00012108-0345mERR025674
SKP00012224mERR025675
SKP00012908-0116mERR025676
SKP000747QMP B2-090ERR025677
SKP00013671BERR025678
SKP00013909-286GERR025679
SKP00014008-109PERR025680
SKP00016208-1737mERR025671
SKP00017007-373GERR025672
SKP00017659MERR025462
SKP000183145MERR025466
SKP00018907-2332mERR025467
SKP00020907-0003mERR025468
SKP00022409-0079mERR025469
SKP00024507-2034mERR025470
SKP000748QMP B2-170ERR025471
SKP00025208-475TERR025472
SKP00025608-058DERR025473
SKP0002601892mERR025463
SKP00026308-1177mERR025464
SKP000301UV937ERR025465
SKP000303UV1172ERR025475
SKP000322NCSR101ERR025479
SKP000326NCSR130ERR025480
SKP000328BAL073ERR025481
SKP000330UV1625ERR025482
SKP000334UV1714ERR025483
SKP000749QMP B2-176ERR025484
SKP000339K21SpERR025485
SKP000343K35NERR025486
SKP000347K38AnERR025476
SKP000352K53NERR025477
SKP000362K77AnERR025478
SKP000367K86NERR025553
SKP000372K102AnERR025557
SKP000378K113NERR025558
SKP000381K215AxERR025559
SKP000389K222CaERR025560
SKP000394K228AnERR025561
SKP000750QMP B2-211ERR025563
SKP000396K231AnERR025562
SKP000404K242AnERR025564
SKP000412K261AnERR025554
SKP000413K262NERR025555
SKP000417K263AnERR025556
SKP000422K268AnERR025488
SKP000424K269CaERR025492
SKP000432K279CaERR025493
SKP000433K280NERR025494
SKP000436K282AxERR025495
SKP000449K290NERR025496
SKP000453K296NERR025497
SKP000460K307AnERR025498
SKP000461A-003-I-a-1ERR025499
SKP000464B-013-I-a-2ERR025489
SKP000467C-017-I-a-1ERR025490
SKP000470D-022-I-b-1ERR025491
SKP000473D-026-I-b-1ERR025501
SKP000476015-CN-2ERR025505
SKP000479025-CN-2ERR025506
SKP000482033-CAZ-1ERR025507
SKP000485039-Na-2ERR025508
SKP000488073-CN-2ERR025509
SKP000751QMP B2-223ERR025510
SKP000490EW-20-R-MAG-1ERR025511
SKP000491EW-20-R-MAC-1ERR025512
SKP000492EW-29-R-MAGERR025502
SKP000494EW-33-R-MAC-2ERR025503
SKP000497EW-44-R-MAG-1ERR025504
SKP000500EW-60-R-MAG-2ERR025514
SKP000503EW-67-R-MACERR025518
SKP000504EW-68-R-MAC-1ERR025519
SKP000505EW-85-R-MANERR025520
SKP000530KpV513ERR025521
SKP000531MM50237ERR025522
SKP000752QMP B2-228ERR025523
SKP000532206535.0ERR025524
SKP0005337085.0ERR025525
SKP000534Kp-MiamiERR025515
SKP000535812079ERR025516
SKP00053685997.0ERR025517
SKP000537AF 3927ERR025566
SKP000541Pus 4878ERR025570
SKP000550Pus 9314/2ERR025571
SKP000556LF 7160ERR025572
SKP000569Pus 13542ERR025573
SKP000571Pus 15007ERR025574
SKP000753QMP B2-248ERR025575
SKP000577Pus 15987ERR025576
SKP000584Pus 16633ERR025577
SKP000588U 2585ERR025567
SKP000591U 8247ERR025568
SKP000597U 9307ERR025569
SKP000602U 12567ERR025527
SKP000608U 13792/2ERR025531
SKP000613U 16821ERR025532
SKP000615UI 461ERR025533
SKP000616UI 522ERR025534
SKP000619UI 2213ERR025535
SKP000754QMP B2-252ERR025536
SKP000627UI 2877ERR025537
SKP000629UI 3324ERR025538
SKP000638UI 4256ERR025528
SKP000641UI 4650ERR025529
SKP000649UI 5407ERR025530
SKP000650UI 6167ERR025579
SKP000659UI 6717ERR025583
SKP000663UI 7631ERR025584
SKP000673UI 8601ERR025585
SKP000680UI 9552ERR025586
SKP000688UI 10871ERR025587
SKP000755QMP B2-282ERR025588
SKP000692ST 752ERR025589
SKP000702UI 12780ERR025590
SKP000707UI 13726ERR025580
SKP000710UI 14245ERR025581
SKP000723UI 15398ERR025582
SKP000724DM23092/04ERR025540
SKP000725DB44834/96ERR025544
SKP000726DU4033/04ERR025545
SKP000727DB11802/05ERR025546
SKP000729DR5092/05ERR025547
SKP000730DU10252/04ERR025548
SKP000756QMP B2-288ERR025549
SKP000732DU33062/05ERR025550
SKP000733DU35427/05ERR025551
SKP000734DU38032/05ERR025541
SKP000735DM1159/01ERR025542
SKP000736DR19891/02ERR025543
SKP000737DM16912/02ERR025111
SKP000738DM17138/03ERR025115
SKP000739DM17337/04ERR025116
SKP000740DM11825/05ERR025117
SKP000741DB270/04ERR025118
SKP000742DU8882/04ERR025119
SKP000757QMP B2-340ERR025120
SKP000743DX259/08ERR025121
SKP000744DR85/08ERR025122
SKP000745DU46543/08ERR025112
SKP000758QMP B2-344ERR025113
SKP000759QMP B2-481ERR025114
SKP000760QMP B2-483ERR025124
SKP000761QMP B2-563ERR025128
SKP000762QMP B2-566ERR025129
SKP000763QMP B2-567ERR025130
SKP000764QMP M1-030ERR025131
SKP000765QMP M1-031ERR025132
SKP000766QMP M1-042ERR025133
SKP000767QMP M1-043ERR025134
SKP000768QMP M1-044ERR025135
SKP000769QMP M1-051ERR025125
SKP000770QMP M1-198ERR025126
SKP000771QMP M1-199ERR025127
SKP000772QMP M1-200ERR025137
SKP000773QMP M1-217ERR025141
SKP000774QMP M1-218ERR025142
SKP000775QMP M1-220ERR025143
SKP000776QMP M1-222ERR025144
SKP000777QMP M1-375ERR025145
SKP000778QMP M1-376ERR025146
SKP000779QMP M1-378ERR025147
SKP000780QMP M1-406ERR025148
SKP000781QMP M1-413ERR025138
SKP000782QMP M1-415ERR025139
SKP000783QMP M1-428ERR025140
SKP000784QMP M1-557ERR025150
SKP000785QMP M1-559ERR025154
SKP000786QMP M1-560ERR025155
SKP000787QMP M1-561ERR025156
SKP000788QMP M1-562ERR025157
SKP000789QMP M1-726ERR025158
SKP000790QMP M1-728ERR025159
SKP000791QMP M1-761ERR025160
SKP000792QMP M1-763ERR025161
SKP000793QMP M1-765ERR025151
SKP000794QMP M1-766ERR025152
SKP000795QMP M1-771ERR025153
SKP000796QMP M1-781ERR025979
SKP000797QMP M1-821ERR025983
SKP000798QMP M1-822ERR025984
SKP000799QMP M1-826ERR025985
SKP000800QMP M1-861ERR025986
SKP000801QMP M1-864ERR025987
SKP000802QMP M1-882ERR025988
SKP000803QMP M1-884ERR025989
SKP000804QMP M1-885ERR025990
SKP000805QMP M1-886ERR025980
SKP000806QMP M1-887ERR025981
SKP000807QMP M1-888ERR025982
SKP000808QMP M1-889ERR025592
SKP000809QMP M1-891ERR025596
SKP000810QMP M1-892ERR025597
SKP000811QMP M1-893ERR025598
SKP000812QMP M1-895ERR025599
SKP000813QMP M1-896ERR025600
SKP000814QMP M1-963ERR025601
SKP000815QMP M1-964ERR025602
SKP000816QMP M1-965ERR025603
SKP000817QMP M1-967ERR025593
SKP000818QMP M1-968ERR025594
SKP000819QMP M1-970ERR025595
SKP000820QMP M1-972ERR025605
SKP000821QMP M1-974ERR025609
SKP000822QMP M1-975ERR025610
SKP000823QMP M1-977ERR025611
SKP000824QMP M1-980ERR025612
SKP000825QMP M1-029ERR025613
SKP000826QMP M1-414ERR025614
SKP000827QMP M2-389ERR025615
SKP000828QMP M2-417ERR025616
SKP000829QMP M2-469ERR025606
SKP000830QMP M1-407ERR025607
SKP000831QMP M2-418ERR025608
SKP000832QMP M2-484ERR025618
SKP000833QMP M2-488ERR025622
SKP000835QMP M2-654ERR025624
SKP000836QMP M1-776ERR025625
SKP000837QMP M1-860ERR025626
SKP000838QMP M2-684ERR025627
SKP000839QMP M1-862ERR025628
SKP000840QMP M1-868ERR025629
SKP000841QMP Z4-692ERR025619
SKP000843QMP Z4-702ERR025620
SKP000847QMP Z4-724ERR025621
SKP000848QMP Z4-726ERR025631
SKP00084909-2503mERR025635
SKP00085009-400BERR025636
SKP00085109-406BERR025637
SKP00085209-2006mERR025638
SKP00085309-309BERR025639
SKP000842QMP Z4-697ERR025640
SKP00085409-2072mERR025641
SKP00085509-2914mERR025642
SKP00085609-439BERR025632
SKP00085709-332BERR025633
SKP00085809-370BERR025634
SKP00085909-2801mERR025644
SKP00086009-341BERR025648
SKP00086109-2985mERR025649
SKP00086209-39PERR025650
SKP000863311GERR025651
SKP000864620mERR025652
SKP000844QMP Z4-709ERR025653
SKP0008652358mERR025654
SKP000866558mERR025655
SKP000867805mERR025645
SKP0008681517.0ERR025646
SKP0008691523.0ERR025647
SKP0008701524.0ERR025657
SKP0008711555.0ERR025661
SKP0008721557.0ERR025662
SKP0008731576.0ERR025663
SKP0008741585.0ERR025664
SKP0008751586.0ERR025665
SKP000845QMP Z4-712ERR025666
SKP0008761612.0ERR025667
SKP0008771753.0ERR025668
SKP0008781764.0ERR025658
SKP0008791765.0ERR025659
SKP0008801789.0ERR025660
SKP0008811824.0ERR025992
SKP0008821884.0ERR025994
SKP0008831896.0ERR025995
SKP0008841897.0ERR025996
SKP0008851993.0ERR025997
SKP0008862024.0ERR025998
SKP000846QMP Z4-716ERR025999
SKP0008872033.0ERR026000
SKP0008881522.0ERR026001
SKP000889TL125ERR025993
SKP000834QMP M2-419ERR025623

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/cbcygxao