Klebsiella pneumoniae

K. pneumoniae is a Gram-negative bacillus of the family Enterobacteriaceae with a world-wide distribution causing disease in a highly diverse group of hosts including humans, animals and plants. Relatively little is known about the evolution of K. pneumoniae. K. pneumoniae is an important cause of human disease resulting in significant morbidity and mortality in the developed world and one of the most common causes of community acquired infections in Asia, causing diseases including pneumonia, liver abscess and septicemia. In developed countries, K. pneumoniae is typically a nosocomial pathogen responsible for sepsis, urinary tract infections and pneumonia K. pneumoniae is also a common veterinary pathogen, causing mastitis in dairy cows and an infection of the uterus in horses. Furthermore, K. pneumoniae is a plant endophyte, illustrating the broad host range of this bacterium. We are aiming to capture a snap shot of the global diversity held within this species and have put together a strain collection for sequencing accordingly.

Data Downloads

This project is ongoing and data for this organism will be made available in due course.

[Genome Research Limited]

Collaborators

Dick Strugnell Ph.D. (Prof) The Department of Microbiology & Immunology, The University of Melbourne, VIC AUSTRALIA

Heiman F.L. Wertheim, M.D. Ph.D. Oxford University Clinical Research Unit, National Institute of Infectious and Tropical Diseases, Bach Mai Hospital, Hanoi Viet Nam.

Kathryn Holt Ph.D. The Department of Microbiology & Immunology, The University of Melbourne, VIC AUSTRALIA

Stephen Baker Ph.D. OAK Leadership Fellow Wellcome Trust Major Overseas Programme Oxford University Clinical Research Unit The Hospital for Tropical Diseases 190 Ben Ham Tu, Quan 5 Ho Chi Minh City Vietnam

Ruth N. Zadoks, DVM, PhD Moredun Chair of Veterinary Epidemiology, Moredun Research Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh

Published Genome Data

The Sanger Institute has sequenced the genome of Klebsiella pneumoniae subsp. pneumoniae Ecl8. The chromosomal genome is available from EMBL/GenBank with accession number HF536482. Similarly, the plasmid is available with accession number HF536483.

HPACC Murray project

Sample

Strain

Run Accession

NCTC-M295M295ERR204293
NCTC-M19M19ERR204292

Klebsiella pneumoniae diversity

Sample

Strain

Run Accession

SKP000008AJ002ERR024817
SKP000025AJ048ERR024821
SKP000026AJ049ERR024822
SKP000028AJ054ERR024823
SKP000009AJ006ERR024824
SKP000011AJ012ERR024825
SKP000016AJ026ERR024826
SKP000017AJ027ERR024827
SKP000019AJ031ERR024828
SKP000020AJ033ERR024818
SKP000021AJ034ERR024819
SKP000023AJ038ERR024820
SKP000029AJ055ERR024830
SKP000053AJ135ERR024834
SKP000055AJ146ERR024835
SKP000057AJ148ERR024836
SKP000030AJ056ERR024837
SKP000033AJ064ERR024838
SKP000038AJ082ERR024839
SKP000039AJ083ERR024840
SKP000040AJ086ERR024841
SKP000042AJ094ERR024831
SKP000043AJ097ERR024832
SKP000044AJ099ERR024833
SKP000061AJ155ERR024843
SKP000077AJ210ERR024847
SKP000078AJ211ERR024848
SKP000079AJ212ERR024849
SKP000062AJ156ERR024850
SKP000063AJ158ERR024851
SKP000068AJ170ERR024852
SKP000071AJ182ERR024853
SKP000072AJ188ERR024854
SKP000073AJ196ERR024844
SKP000075AJ205ERR024845
SKP000076AJ208ERR024846
SKP000081AJ214ERR025098
SKP000099AJ292ERR025102
SKP000101AJ299ERR025103
SKP000102AJ303ERR025104
SKP000083AJ218ERR025105
SKP000084AJ220ERR025106
SKP000085AJ229ERR025107
SKP000088AJ256ERR025108
SKP000094AJ278ERR025109
SKP000095AJ281ERR025099
SKP000097AJ289ERR025100
SKP000098AJ290ERR025101
SKP00011008-049BERR025670
SKP00011271MERR025673
SKP00012108-0345mERR025674
SKP00012224mERR025675
SKP00012908-0116mERR025676
SKP000747QMP B2-090ERR025677
SKP00013671BERR025678
SKP00013909-286GERR025679
SKP00014008-109PERR025680
SKP00016208-1737mERR025671
SKP00017007-373GERR025672
SKP00017659MERR025462
SKP000183145MERR025466
SKP00018907-2332mERR025467
SKP00020907-0003mERR025468
SKP00022409-0079mERR025469
SKP00024507-2034mERR025470
SKP000748QMP B2-170ERR025471
SKP00025208-475TERR025472
SKP00025608-058DERR025473
SKP0002601892mERR025463
SKP00026308-1177mERR025464
SKP000301UV937ERR025465
SKP000303UV1172ERR025475
SKP000322NCSR101ERR025479
SKP000326NCSR130ERR025480
SKP000328BAL073ERR025481
SKP000330UV1625ERR025482
SKP000334UV1714ERR025483
SKP000749QMP B2-176ERR025484
SKP000339K21SpERR025485
SKP000343K35NERR025486
SKP000347K38AnERR025476
SKP000352K53NERR025477
SKP000362K77AnERR025478
SKP000367K86NERR025553
SKP000372K102AnERR025557
SKP000378K113NERR025558
SKP000381K215AxERR025559
SKP000389K222CaERR025560
SKP000394K228AnERR025561
SKP000750QMP B2-211ERR025563
SKP000396K231AnERR025562
SKP000404K242AnERR025564
SKP000412K261AnERR025554
SKP000413K262NERR025555
SKP000417K263AnERR025556
SKP000422K268AnERR025488
SKP000424K269CaERR025492
SKP000432K279CaERR025493
SKP000433K280NERR025494
SKP000436K282AxERR025495
SKP000449K290NERR025496
SKP000453K296NERR025497
SKP000460K307AnERR025498
SKP000461A-003-I-a-1ERR025499
SKP000464B-013-I-a-2ERR025489
SKP000467C-017-I-a-1ERR025490
SKP000470D-022-I-b-1ERR025491
SKP000473D-026-I-b-1ERR025501
SKP000476015-CN-2ERR025505
SKP000479025-CN-2ERR025506
SKP000482033-CAZ-1ERR025507
SKP000485039-Na-2ERR025508
SKP000488073-CN-2ERR025509
SKP000751QMP B2-223ERR025510
SKP000490EW-20-R-MAG-1ERR025511
SKP000491EW-20-R-MAC-1ERR025512
SKP000492EW-29-R-MAGERR025502
SKP000494EW-33-R-MAC-2ERR025503
SKP000497EW-44-R-MAG-1ERR025504
SKP000500EW-60-R-MAG-2ERR025514
SKP000503EW-67-R-MACERR025518
SKP000504EW-68-R-MAC-1ERR025519
SKP000505EW-85-R-MANERR025520
SKP000530KpV513ERR025521
SKP000531MM50237ERR025522
SKP000752QMP B2-228ERR025523
SKP000532206535.0ERR025524
SKP0005337085.0ERR025525
SKP000534Kp-MiamiERR025515
SKP000535812079ERR025516
SKP00053685997.0ERR025517
SKP000537AF 3927ERR025566
SKP000541Pus 4878ERR025570
SKP000550Pus 9314/2ERR025571
SKP000556LF 7160ERR025572
SKP000569Pus 13542ERR025573
SKP000571Pus 15007ERR025574
SKP000753QMP B2-248ERR025575
SKP000577Pus 15987ERR025576
SKP000584Pus 16633ERR025577
SKP000588U 2585ERR025567
SKP000591U 8247ERR025568
SKP000597U 9307ERR025569
SKP000602U 12567ERR025527
SKP000608U 13792/2ERR025531
SKP000613U 16821ERR025532
SKP000615UI 461ERR025533
SKP000616UI 522ERR025534
SKP000619UI 2213ERR025535
SKP000754QMP B2-252ERR025536
SKP000627UI 2877ERR025537
SKP000629UI 3324ERR025538
SKP000638UI 4256ERR025528
SKP000641UI 4650ERR025529
SKP000649UI 5407ERR025530
SKP000650UI 6167ERR025579
SKP000659UI 6717ERR025583
SKP000663UI 7631ERR025584
SKP000673UI 8601ERR025585
SKP000680UI 9552ERR025586
SKP000688UI 10871ERR025587
SKP000755QMP B2-282ERR025588
SKP000692ST 752ERR025589
SKP000702UI 12780ERR025590
SKP000707UI 13726ERR025580
SKP000710UI 14245ERR025581
SKP000723UI 15398ERR025582
SKP000724DM23092/04ERR025540
SKP000725DB44834/96ERR025544
SKP000726DU4033/04ERR025545
SKP000727DB11802/05ERR025546
SKP000729DR5092/05ERR025547
SKP000730DU10252/04ERR025548
SKP000756QMP B2-288ERR025549
SKP000732DU33062/05ERR025550
SKP000733DU35427/05ERR025551
SKP000734DU38032/05ERR025541
SKP000735DM1159/01ERR025542
SKP000736DR19891/02ERR025543
SKP000737DM16912/02ERR025111
SKP000738DM17138/03ERR025115
SKP000739DM17337/04ERR025116
SKP000740DM11825/05ERR025117
SKP000741DB270/04ERR025118
SKP000742DU8882/04ERR025119
SKP000757QMP B2-340ERR025120
SKP000743DX259/08ERR025121
SKP000744DR85/08ERR025122
SKP000745DU46543/08ERR025112
SKP000758QMP B2-344ERR025113
SKP000759QMP B2-481ERR025114
SKP000760QMP B2-483ERR025124
SKP000761QMP B2-563ERR025128
SKP000762QMP B2-566ERR025129
SKP000763QMP B2-567ERR025130
SKP000764QMP M1-030ERR025131
SKP000765QMP M1-031ERR025132
SKP000766QMP M1-042ERR025133
SKP000767QMP M1-043ERR025134
SKP000768QMP M1-044ERR025135
SKP000769QMP M1-051ERR025125
SKP000770QMP M1-198ERR025126
SKP000771QMP M1-199ERR025127
SKP000772QMP M1-200ERR025137
SKP000773QMP M1-217ERR025141
SKP000774QMP M1-218ERR025142
SKP000775QMP M1-220ERR025143
SKP000776QMP M1-222ERR025144
SKP000777QMP M1-375ERR025145
SKP000778QMP M1-376ERR025146
SKP000779QMP M1-378ERR025147
SKP000780QMP M1-406ERR025148
SKP000781QMP M1-413ERR025138
SKP000782QMP M1-415ERR025139
SKP000783QMP M1-428ERR025140
SKP000784QMP M1-557ERR025150
SKP000785QMP M1-559ERR025154
SKP000786QMP M1-560ERR025155
SKP000787QMP M1-561ERR025156
SKP000788QMP M1-562ERR025157
SKP000789QMP M1-726ERR025158
SKP000790QMP M1-728ERR025159
SKP000791QMP M1-761ERR025160
SKP000792QMP M1-763ERR025161
SKP000793QMP M1-765ERR025151
SKP000794QMP M1-766ERR025152
SKP000795QMP M1-771ERR025153
SKP000796QMP M1-781ERR025979
SKP000797QMP M1-821ERR025983
SKP000798QMP M1-822ERR025984
SKP000799QMP M1-826ERR025985
SKP000800QMP M1-861ERR025986
SKP000801QMP M1-864ERR025987
SKP000802QMP M1-882ERR025988
SKP000803QMP M1-884ERR025989
SKP000804QMP M1-885ERR025990
SKP000805QMP M1-886ERR025980
SKP000806QMP M1-887ERR025981
SKP000807QMP M1-888ERR025982
SKP000808QMP M1-889ERR025592
SKP000809QMP M1-891ERR025596
SKP000810QMP M1-892ERR025597
SKP000811QMP M1-893ERR025598
SKP000812QMP M1-895ERR025599
SKP000813QMP M1-896ERR025600
SKP000814QMP M1-963ERR025601
SKP000815QMP M1-964ERR025602
SKP000816QMP M1-965ERR025603
SKP000817QMP M1-967ERR025593
SKP000818QMP M1-968ERR025594
SKP000819QMP M1-970ERR025595
SKP000820QMP M1-972ERR025605
SKP000821QMP M1-974ERR025609
SKP000822QMP M1-975ERR025610
SKP000823QMP M1-977ERR025611
SKP000824QMP M1-980ERR025612
SKP000825QMP M1-029ERR025613
SKP000826QMP M1-414ERR025614
SKP000827QMP M2-389ERR025615
SKP000828QMP M2-417ERR025616
SKP000829QMP M2-469ERR025606
SKP000830QMP M1-407ERR025607
SKP000831QMP M2-418ERR025608
SKP000832QMP M2-484ERR025618
SKP000833QMP M2-488ERR025622
SKP000835QMP M2-654ERR025624
SKP000836QMP M1-776ERR025625
SKP000837QMP M1-860ERR025626
SKP000838QMP M2-684ERR025627
SKP000839QMP M1-862ERR025628
SKP000840QMP M1-868ERR025629
SKP000841QMP Z4-692ERR025619
SKP000843QMP Z4-702ERR025620
SKP000847QMP Z4-724ERR025621
SKP000848QMP Z4-726ERR025631
SKP00084909-2503mERR025635
SKP00085009-400BERR025636
SKP00085109-406BERR025637
SKP00085209-2006mERR025638
SKP00085309-309BERR025639
SKP000842QMP Z4-697ERR025640
SKP00085409-2072mERR025641
SKP00085509-2914mERR025642
SKP00085609-439BERR025632
SKP00085709-332BERR025633
SKP00085809-370BERR025634
SKP00085909-2801mERR025644
SKP00086009-341BERR025648
SKP00086109-2985mERR025649
SKP00086209-39PERR025650
SKP000863311GERR025651
SKP000864620mERR025652
SKP000844QMP Z4-709ERR025653
SKP0008652358mERR025654
SKP000866558mERR025655
SKP000867805mERR025645
SKP0008681517.0ERR025646
SKP0008691523.0ERR025647
SKP0008701524.0ERR025657
SKP0008711555.0ERR025661
SKP0008721557.0ERR025662
SKP0008731576.0ERR025663
SKP0008741585.0ERR025664
SKP0008751586.0ERR025665
SKP000845QMP Z4-712ERR025666
SKP0008761612.0ERR025667
SKP0008771753.0ERR025668
SKP0008781764.0ERR025658
SKP0008791765.0ERR025659
SKP0008801789.0ERR025660
SKP0008811824.0ERR025992
SKP0008821884.0ERR025994
SKP0008831896.0ERR025995
SKP0008841897.0ERR025996
SKP0008851993.0ERR025997
SKP0008862024.0ERR025998
SKP000846QMP Z4-716ERR025999
SKP0008872033.0ERR026000
SKP0008881522.0ERR026001
SKP000889TL125ERR025993
SKP000834QMP M2-419ERR025623

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/fm9u6u47