Escherichia coli

Data Downloads

FTP site

BLAST server

[Genome Research Limited]

The Sanger Institute was funded to perform comparative sequencing of five Escherichia coli and Shigella strains in collaboration with Dr. Christoph Tang of the Centre for Molecular Microbiology and Infection, Imperial College, London, Prof. Mark Pallen and Dr. Ian Henderson of the Division of Immunity and Infection, University of Birmingham, UK Dr. Claude Parsot and Dr. Phillipe Sansonetti of the Unite de Pathologie Microbienne, Institut Pasteur, France, Dr. Gadi Frankel, of the Department of Biochemistry, Imperial College, London, and Dr. Stuart Knutton of the Institute of Child Health, Birmingham.

Published Genome Data

Published Sequence

E. coli E2348/69 is published and consists of a chromosome, with EMBL/GenBank accession FM180568, and two plasmids, with EMBL/GenBank accessions FM180569 and FM180570.

Shotgun and assembly data from this project are available from our FTP site.

Finished Sequence

E. coli 042 is finished and consists of a chromosomal genome and a plasmid. Shotgun and assembly data from this project are available from our FTP site.


Funded Sequencing

E. coli non-K1 which has been funded for sequencing.

Other Projects

Additionally, as part of a joint project investigating the genomics and population biology of Enterotoxigenic E. coli (ETEC), the Sanger Institute, funded by the BBSRC has sequenced the genome of an ETEC strain, H10407 This project was funded in collaboration with Dr. Ian Henderson and Prof. Mark Pallen of the Department of Immunity and Infection, University of Birmingham.

This genome is finished and consists of a chromosome and 4 plasmids.

Shotgun and assembly data from this project are available from our FTP site.

Global phylogeny of enterotoxigenic Escherichia coli collection

Sample

Strain

Run Accession

E_8UnknownERR049156
E_42UnknownERR049157
E_54UnknownERR049158
E_70UnknownERR049159
E_71UnknownERR049160
E_88UnknownERR049161
E_333UnknownERR049162
E_344UnknownERR049163
E_370UnknownERR049164
E_416UnknownERR049165
E_471UnknownERR049166
E_517UnknownERR049167
E_554UnknownERR049168
E_562UnknownERR049169
E_563UnknownERR049170
E_632UnknownERR049171
E_636UnknownERR049172
E_655UnknownERR049173
E_863UnknownERR049174
E_877UnknownERR049175
E_879UnknownERR049176
E_897UnknownERR049177
E_916UnknownERR049178
E_917UnknownERR049179
E_925UnknownERR052905
E_925UnknownERR052881
E_927UnknownERR052882
E_927UnknownERR052906
E_938UnknownERR052907
E_938UnknownERR052883
E_940UnknownERR052884
E_940UnknownERR052908
E_953UnknownERR052885
E_953UnknownERR052909
E_986UnknownERR052886
E_986UnknownERR052910
E_1034UnknownERR052887
E_1034UnknownERR052911
E_1074UnknownERR052888
E_1074UnknownERR052912
E_1085UnknownERR052889
E_1085UnknownERR052913
E_1091UnknownERR052914
E_1091UnknownERR052890
E_1111UnknownERR052915
E_1111UnknownERR052891
E_1189UnknownERR052916
E_1189UnknownERR052892
E_1245UnknownERR052917
E_1245UnknownERR052893
E_1287UnknownERR052918
E_1287UnknownERR052894
E_1298UnknownERR052919
E_1298UnknownERR052895
E_1373UnknownERR052920
E_1373UnknownERR052896
E_1392UnknownERR052921
E_1392UnknownERR052897
E_1541UnknownERR052922
E_1541UnknownERR052898
E_1548UnknownERR052899
E_1548UnknownERR052923
E_1624UnknownERR052900
E_1624UnknownERR052924
E_1646UnknownERR052925
E_1646UnknownERR052901
E_1716UnknownERR052926
E_1716UnknownERR052902
E_1779UnknownERR052927
E_1779UnknownERR052903
E_1784UnknownERR052928
E_1784UnknownERR052904
E_1654UnknownERR054665
E_106UnknownERR054666
E_21UnknownERR054667
E_28UnknownERR054668
E_36UnknownERR054669
E_45UnknownERR054670
E_66UnknownERR054671
E_74UnknownERR054672
E_79UnknownERR054673
E_85UnknownERR054674
E_87UnknownERR054675
E_97UnknownERR054676
E_99UnknownERR054677
E_110UnknownERR054678
E_126UnknownERR054679
E_129UnknownERR054680
E_133UnknownERR054681
E_135UnknownERR054682
E_141UnknownERR054683
E_143UnknownERR054684
E_151UnknownERR054685
E_220UnknownERR054686
E_224UnknownERR054687
E_237UnknownERR054688
E_251UnknownERR054689
E_272UnknownERR054690
E_806UnknownERR054691
E_810UnknownERR054692
E_812UnknownERR054693
E_816UnknownERR054694
E_822UnknownERR054695
E_842UnknownERR054696
E_856UnknownERR054697
E_858UnknownERR054698
E_867UnknownERR054699
E_871UnknownERR054700
E_882UnknownERR054701
E_883UnknownERR054702
E_895UnknownERR054703
E_900UnknownERR054704
E_901UnknownERR054705
E_903UnknownERR054706
E_907UnknownERR054707
E_920UnknownERR054708
E_928UnknownERR054709
E_943UnknownERR054710
E_1003UnknownERR054711
E_1009UnknownERR054712
E_1018UnknownERR084463
E_1334UnknownERR084464
E_1360UnknownERR084465
E_1363UnknownERR084466
E_1407UnknownERR084467
E_1433UnknownERR084468
E_1460UnknownERR084469
E_1524E 1524ERR084470
E_1527E 1527ERR084471
E_1535E 1535ERR084472
E_1593E 1593ERR084473
E_1620E 1620ERR084474
E_1635E 1635ERR084475
E_1649E 1649ERR084476
E_1657E 1657ERR084477
E_1667E 1667ERR084478
E_1724E 1724ERR084479
E_1741E 1741ERR084480
E_1750E 1750ERR084481
E_1760E 1760ERR084482
E_1795E 1795ERR084483
E_1797E 1797ERR084484
E_1841E 1841ERR084485
E_1883E 1883ERR084486
E_1918E 1918ERR084487
E_1939E 1939ERR084488
E_1947E 1947ERR084489
E_1994E 1994ERR084490
E_2088E 2088ERR084491
E_2092E 2092ERR089723
E_2118E 2118ERR089724
E_2131E 2131ERR089725
E_2185E 2185ERR089726
E_2219E 2219ERR089727
E_2256E 2256ERR089728
E_2339E 2339ERR089729
E_2347E 2347ERR089730
E_2348E 2348ERR089731
E_2386E 2386ERR089732
E_2397E 2397ERR089733
E_2980E 2980ERR089734
E_2981E 2981ERR089735
E_3015E 3015ERR089736
E_5026E 5026ERR089737
E5049E5049ERR089738
E5051E5051ERR089739
E5052E5052ERR089740
E5080E5080ERR089741
E5081E5081ERR089742
E5082E5082ERR089743
E5084E5084ERR089744
E5085E5085ERR089745
E5086E5086ERR089746
E5087E5087ERR089747
E5088E5088ERR089748
E5089E5089ERR089749
  • Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

    Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, Parkhill J and Frankel G

    Journal of bacteriology 2009;191;1;347-54

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/77g85goi