Escherichia coli

Data Downloads

FTP site

BLAST server

[Genome Research Limited]

The Sanger Institute was funded to perform comparative sequencing of five Escherichia coli and Shigella strains in collaboration with Dr. Christoph Tang of the Centre for Molecular Microbiology and Infection, Imperial College, London, Prof. Mark Pallen and Dr. Ian Henderson of the Division of Immunity and Infection, University of Birmingham, UK Dr. Claude Parsot and Dr. Phillipe Sansonetti of the Unite de Pathologie Microbienne, Institut Pasteur, France, Dr. Gadi Frankel, of the Department of Biochemistry, Imperial College, London, and Dr. Stuart Knutton of the Institute of Child Health, Birmingham.

Published Genome Data

Published Sequence

E. coli E2348/69 is published and consists of a chromosome, with EMBL/GenBank accession FM180568, and two plasmids, with EMBL/GenBank accessions FM180569 and FM180570.

Shotgun and assembly data from this project are available from our FTP site.

E. coli 042 is published and consists of a chromosomal genome, with EMBL/GenBank accession FN554766 and a plasmid, with EMBL/GenBank accession FN554767.

Shotgun and assembly data from this project are available from our FTP site.

The chromosomal genomes ofE.coli chi7122 and E. coli IMT2125 are available in EMBL/GenBank with accessions HE962388 and HE964769 respectively.

Funded Sequencing

E. coli non-K1 which has been funded for sequencing.

Other Projects

Additionally, as part of a joint project investigating the genomics and population biology of Enterotoxigenic E. coli (ETEC), the Sanger Institute, funded by the BBSRC has sequenced the genome of an ETEC strain, H10407 This project was funded in collaboration with Dr. Ian Henderson and Prof. Mark Pallen of the Department of Immunity and Infection, University of Birmingham.

This genome is published and consists of a chromosome and 4 plasmids. The chromosome has EMBL/GenBank accession FN649414 and the plasmids have accessions FN649415, FN649416, FN649417 and FN649418

Shotgun and assembly data from this project are available from our FTP site.

Global phylogeny of enterotoxigenic Escherichia coli collection

Sample

Strain

Run Accession

E_1654UnknownERR054665
E_106UnknownERR054666
E_21UnknownERR054667
E_28UnknownERR054668
E_36UnknownERR054669
E_45UnknownERR054670
E_66UnknownERR054671
E_74UnknownERR054672
E_79UnknownERR054673
E_85UnknownERR054674
E_87UnknownERR054675
E_97UnknownERR054676
E_99UnknownERR054677
E_110UnknownERR054678
E_126UnknownERR054679
E_129UnknownERR054680
E_133UnknownERR054681
E_135UnknownERR054682
E_141UnknownERR054683
E_143UnknownERR054684
E_151UnknownERR054685
E_220UnknownERR054686
E_224UnknownERR054687
E_237UnknownERR054688
E_251UnknownERR054689
E_272UnknownERR054690
E_806UnknownERR054691
E_810UnknownERR054692
E_812UnknownERR054693
E_816UnknownERR054694
E_822UnknownERR054695
E_842UnknownERR054696
E_856UnknownERR054697
E_858UnknownERR054698
E_867UnknownERR054699
E_871UnknownERR054700
E_882UnknownERR054701
E_883UnknownERR054702
E_895UnknownERR054703
E_900UnknownERR054704
E_901UnknownERR054705
E_903UnknownERR054706
E_907UnknownERR054707
E_920UnknownERR054708
E_928UnknownERR054709
E_943UnknownERR054710
E_1003UnknownERR054711
E_1009UnknownERR054712
E_1018UnknownERR084463
E_1334UnknownERR084464
E_1360UnknownERR084465
E_1363UnknownERR084466
E_1407UnknownERR084467
E_1433UnknownERR084468
E_1460UnknownERR084469
E_1524E 1524ERR084470
E_1527E 1527ERR084471
E_1535E 1535ERR084472
E_1593E 1593ERR084473
E_1620E 1620ERR084474
E_1635E 1635ERR084475
E_1649E 1649ERR084476
E_1657E 1657ERR084477
E_1667E 1667ERR084478
E_1724E 1724ERR084479
E_1741E 1741ERR084480
E_1750E 1750ERR084481
E_1760E 1760ERR084482
E_1795E 1795ERR084483
E_1797E 1797ERR084484
E_1841E 1841ERR084485
E_1883E 1883ERR084486
E_1918E 1918ERR084487
E_1939E 1939ERR084488
E_1947E 1947ERR084489
E_1994E 1994ERR084490
E_2088E 2088ERR084491
E_2092E 2092ERR089723
E_2118E 2118ERR089724
E_2131E 2131ERR089725
E_2185E 2185ERR089726
E_2219E 2219ERR089727
E_2256E 2256ERR089728
E_2339E 2339ERR089729
E_2347E 2347ERR089730
E_2348E 2348ERR089731
E_2386E 2386ERR089732
E_2397E 2397ERR089733
E_2980E 2980ERR089734
E_2981E 2981ERR089735
E_3015E 3015ERR089736
E_5026E 5026ERR089737
E5049E5049ERR089738
E5051E5051ERR089739
E5052E5052ERR089740
E5080E5080ERR089741
E5081E5081ERR089742
E5082E5082ERR089743
E5084E5084ERR089744
E5085E5085ERR089745
E5086E5086ERR089746
E5087E5087ERR089747
E5088E5088ERR089748
E5089E5089ERR089749
CG04UnknownERR114756
CG10UnknownERR114757
CG12UnknownERR114758
Ec252R_gUnknownERR114759
Ec252R_gUnknownERR118219

CF negative Enterotoxigenic Escherichia coli

Sample

Strain

Run Accession

E_658CFnE 658ERR119420
E_645CFnE 645ERR119419
E_628CFnE 628ERR119418
E_626CFnE 626ERR119417
E_622CFnE 622ERR119416
E_621CFnE 621ERR119415
E_620CFnE 620ERR119414
E_618CFnE 618ERR119413
E_616CFnE 616ERR119412
E_604CFnE 604ERR119411
E_529CFnE 529ERR119410
E_528CFnE 528ERR119409
E_527CFnE 527ERR119408
E_523CFnE 523ERR119407
E_520CFnE 520ERR119406
E_519CFnE 519ERR119405
E_513CFnE 513ERR119404
E_509CFnE 509ERR119403
E_451CFnE 451ERR119402
E_445CFnE 445ERR119401
E_425CFnE 425ERR119400
E_415CFnE 415ERR119399
E_405CFnE 405ERR119398
E_399CFnE 399ERR119397
E_391CFnE 391ERR119396
E_390CFnE 390ERR119395
E_361CFnE 361ERR119394
E_360CFnE 360ERR119393
E_356CFnE 356ERR119392
E_354CFnE 354ERR119391
E_351CFnE 351ERR119390
E_343CFnE 343ERR119389
E_263CFnE 263ERR119383
E_239CFnE 239ERR119382
E_223CFnE 223ERR119381
E_222CFnE 222ERR119380
E2392CFnE2392ERR119571
E2388CFnE2388ERR119570
E2377CFnE2377ERR119569
E2371CFnE2371ERR119568
E2370CFnE2370ERR119567
E2367CFnE2367ERR119566
E2362CFnE2362ERR119565
E_2121CFnE 2121ERR119564
E_2110CFnE 2110ERR119563
E_2108CFnE 2108ERR119562
E_1961CFnE 1961ERR119561
E_1871CFnE 1871ERR119560
E_1752CFnE 1752ERR119559
E_1744CFnE 1744ERR119558
E_1739CFnE 1739ERR119557
E_1736CFnE 1736ERR119556
E_1735CFnE 1735ERR119555
E_1712CFnE 1712ERR119554
E_1690CFnE 1690ERR119553
E_1684CFnE 1684ERR119552
E_1682CFnE 1682ERR119551
E_1679CFnE 1679ERR119550
E_1674CFnE 1674ERR119549
E_1673CFnE 1673ERR119548
E_167CFnE 167ERR119547
E_1666CFnE 1666ERR119546
E_1661CFnE 1661ERR119545
E_1659CFnE 1659ERR119544
E_1650CFnE 1650ERR119543
E_1648CFnE 1648ERR119542
E_1647CFnE 1647ERR119541
E_1642CFnE 1642ERR119540
E_1641CFnE 1641ERR119539
E_1640CFnE 1640ERR119538
E_1638CFnE 1638ERR119537
E_1637CFnE 1637ERR119536
E_1634CFnE 1634ERR119535
E_1628CFnE 1628ERR119534
E_1625CFnE 1625ERR119533
E_1623CFnE 1623ERR119532
E_1617CFnE 1617ERR119531
E_1616CFnE 1616ERR119530
E_1615CFnE 1615ERR119529
E_1611CFnE 1611ERR119528
E_1609CFnE 1609ERR119527
E_1607CFnE 1607ERR119526
E_1604CFnE 1604ERR119525
E_1600CFnE 1600ERR119524
E160CFnE160ERR119523
E_1599CFnE 1599ERR119522
E_1597CFnE 1597ERR119521
E_1596CFnE 1596ERR119520
E_1594CFnE 1594ERR119519
E_1592CFnE 1592ERR119518
E_159CFnE 159ERR119517
E_1587CFnE 1587ERR119516
E_1586CFnE 1586ERR119515
E_1585CFnE 1585ERR119514
E_1582CFnE 1582ERR119513
E_1581CFnE 1581ERR119512
E_1580CFnE 1580ERR119511
E_1576CFnE 1576ERR119510
E_1574CFnE 1574ERR119509
E_1573CFnE 1573ERR119508
E_157CFnE 157ERR119507
E_1564CFnE 1564ERR119506
E_1561CFnE 1561ERR119505
E_1556CFnE 1556ERR119504
E_1544CFnE 1544ERR119503
E_1543CFnE 1543ERR119502
E_1542CFnE 1542ERR119501
E_1534CFnE 1534ERR119500
E_1533CFnE 1533ERR119499
E_1532CFnE 1532ERR119498
E_1526CFnE 1526ERR119497
E_1525CFnE 1525ERR119496
E_1442CFnE 1442ERR119495
E_1432CFnE 1432ERR119494
E_1408CFnE 1408ERR119493
E_1407CFnE 1407ERR119492
E_1398CFnE 1398ERR119491
E_1365CFnE 1365ERR119490
E_1362CFnE 1362ERR119489
E_1360CFnE 1360ERR119488
E_1356CFnE 1356ERR119487
E_1355CFnE 1355ERR119486
E_1352CFnE 1352ERR119485
E_1285CFnE 1285ERR119484
E_1282CFnE 1282ERR119483
E_1281CFnE 1281ERR119482
E_1264CFnE 1264ERR119481
E_1258CFnE 1258ERR119480
E_1248CFnE 1248ERR119479
E_1242CFnE 1242ERR119478
E_1193CFnE 1193ERR119477
E_1169CFnE 1169ERR119476
E_1167CFnE 1167ERR119475
E_1102CFnE 1102ERR119474
E_1101CFnE 1101ERR119473
E_1072CFnE 1072ERR119472
E_1057CFnE 1057ERR119471
E_998CFnE 998ERR119470
E_996CFnE 996ERR119469
E_978CFnE 978ERR119468
E_957CFnE 957ERR119467
E_956CFnE 956ERR119466
E_955CFnE 955ERR119465
E_952CFnE 952ERR119464
E_949CFnE 949ERR119463
E_947CFnE 947ERR119462
E_945CFnE 945ERR119461
E_944CFnE 944ERR119460
E_941CFnE 941ERR119459
E_939CFnE 939ERR119458
E_936CFnE 936ERR119457
E_935CFnE 935ERR119456
E_934CFnE 934ERR119455
E_933CFnE 933ERR119454
E_924CFnE 924ERR119453
E_908CFnE 908ERR119452
E_901CFnE 901ERR119451
E_899CFnE 899ERR119450
E_898CFnE 898ERR119449
E_893CFnE 893ERR119448
E_892CFnE 892ERR119447
E_891CFnE 891ERR119446
E_890CFnE 890ERR119445
E_888CFnE 888ERR119444
E_887CFnE 887ERR119443
E_885CFnE 885ERR119442
E_884CFnE 884ERR119441
E_883CFnE 883ERR119440
E_881CFnE 881ERR119439
E_876CFnE 876ERR119438
E_873CFnE 873ERR119437
E_865CFnE 865ERR119436
E_860CFnE 860ERR119435
E_855CFnE 855ERR119434
E_841CFnE 841ERR119433
E_833CFnE 833ERR119432
E_828CFnE 828ERR119431
E_821CFnE 821ERR119430
E_819CFnE 819ERR119429
E_818CFnE 818ERR119428
E_811CFnE 811ERR119427
E_710CFnE 710ERR119426
E_705CFnE 705ERR119425
E_704CFnE 704ERR119424
E_703CFnE 703ERR119423
E_662CFnE 662ERR119422
E_659CFnE 659ERR119421
E_340CFnE 340ERR119388
E_336CFnE 336ERR119387
E_335CFnE 335ERR119386
E_330CFnE 330ERR119385
E_329CFnE 329ERR119384
E4134CFnE4134ERR119578
E3015CFnE3015ERR119577
E2439CFnE2439ERR119576
E2405CFnE2405ERR119575
E2404CFnE2404ERR119574
E2395CFnE2395ERR119573
E2393CFnE2393ERR119572

Atypical enteropathogenic E. coli virulence markers

Sample

Strain

Run Accession

100269_aEPECUnknownERR134513
100554_aEPECUnknownERR134514
100600_aEPECUnknownERR134515
102298_aEPECUnknownERR134516
102328_aEPECUnknownERR134517
102485_aEPECUnknownERR134518
200135_aEPECUnknownERR134519
200439_aEPECUnknownERR134520
201214_aEPECUnknownERR134521
201534_aEPECUnknownERR134522
202423_aEPECUnknownERR134523
202443_aEPECUnknownERR134524
202453_aEPECUnknownERR134525
202833_aEPECUnknownERR134526
202973_aEPECUnknownERR134527
204302_aEPECUnknownERR134528
300086_aEPECUnknownERR134529
300711_aEPECUnknownERR134530
300795_aEPECUnknownERR134531
402048_aEPECUnknownERR134532
402099_aEPECUnknownERR134533
402248_aEPECUnknownERR134534
402654_aEPECUnknownERR134535
402770_aEPECUnknownERR134536
403128_aEPECUnknownERR134537
403308_aEPECUnknownERR134538
500275_aEPECUnknownERR134539
500618_aEPECUnknownERR134540
500858_aEPECUnknownERR134541
500864_aEPECUnknownERR134542
501029_aEPECUnknownERR134543
503028_aEPECUnknownERR134544
503225_aEPECUnknownERR134545
503459_aEPECUnknownERR134546
503662_aEPECUnknownERR134547
504225_aEPECUnknownERR134548
504300_aEPECUnknownERR134549
504449_aEPECUnknownERR134550
504647_aEPECUnknownERR134551
504821_aEPECUnknownERR134552
504888_aEPECUnknownERR134553
602370_aEPECUnknownERR134554
700337_aEPECUnknownERR134555
700495_aEPECUnknownERR134556
702074_aEPECUnknownERR134557
702161_aEPECUnknownERR134558
703258_aEPECUnknownERR134559
703975_aEPECUnknownERR134560
200708_aEPECUnknownERR137782
200758_aEPECUnknownERR137783
201381_aEPECUnknownERR137784
400549_aEPECUnknownERR137785
400654_aEPECUnknownERR137786
400714_aEPECUnknownERR137787
400792_aEPECUnknownERR137788
400998_aEPECUnknownERR137789
401250_aEPECUnknownERR137790
401596_aEPECUnknownERR137791
401886_aEPECUnknownERR137792
401938_aEPECUnknownERR137793
402074_aEPECUnknownERR137794
402480_aEPECUnknownERR137795
402743_aEPECUnknownERR137796
402780_aEPECUnknownERR137797
402977_aEPECUnknownERR137798
403096_aEPECUnknownERR137799
403726_aEPECUnknownERR137800
503238_aEPECUnknownERR137801
503891_aEPECUnknownERR137802
504005_aEPECUnknownERR137803
702745_aEPECUnknownERR137804
702890_aEPECUnknownERR137805
702898_aEPECUnknownERR137806
100383_aEPECUnknownERR137807
102010_aEPECUnknownERR137808
102014_aEPECUnknownERR137809
102366_aEPECUnknownERR137810
102606_aEPECUnknownERR137811
200456_aEPECUnknownERR137812
200959_aEPECUnknownERR137813
201191_aEPECUnknownERR137814
201488_aEPECUnknownERR137815
201589_aEPECUnknownERR137816
202317_aEPECUnknownERR137817
202621_aEPECUnknownERR137818
300812_aEPECUnknownERR137819
300814_aEPECUnknownERR137820
400897_aEPECUnknownERR137821
401117_aEPECUnknownERR137822
401174_aEPECUnknownERR137823
401709_aEPECUnknownERR137824
402058_aEPECUnknownERR137825
402097_aEPECUnknownERR137826
402227_aEPECUnknownERR137827
500197_aEPECUnknownERR137828
503130_aEPECUnknownERR137829
503311_aEPECUnknownERR124653
503947_aEPECUnknownERR124654
505393_aEPECUnknownERR124655
505513_aEPECUnknownERR124656
401480_aEPECUnknownERR124657
200781_aEPECUnknownERR124658
202521_aEPECUnknownERR124659
203470_aEPECUnknownERR124660
204263_aEPECUnknownERR124661
402138_aEPECUnknownERR124662
503537_aEPECUnknownERR124663
504925_aEPECUnknownERR124664
G603423G603423ERR178228
G401529G401529ERR178227
G302544G302544ERR178226
G302551G302551ERR178225
G503854G503854ERR178224
G500007G500007ERR178223
G504540G504540ERR178222
G500407G500407ERR178221
300153300153ERR178220
503320503320ERR178219
302710302710ERR178218
302700302700ERR178217
201350201350ERR178216
700863700863ERR178215
700149700149ERR178214
500193500193ERR178213
302701302701ERR178212
302619302619ERR178211
302613302613ERR178210
703063703063ERR178209
500095500095ERR178208
500094500094ERR178207
403523403523ERR178206
402842402842ERR178205
402794402794ERR178204
402767402767ERR178203
402696402696ERR178202
401907401907ERR178201
401686401686ERR178200
401352401352ERR178199
302082302082ERR178198
503256503256ERR178197
503023503023ERR178196
501016501016ERR178195
402605402605ERR178194
300073300073ERR178193
103151103151ERR178192
703273703273ERR178191
155388155388ERR178190
703753703753ERR178189
703128703128ERR178188
703108703108ERR178187
702797702797ERR178186
702971702971ERR178185
402898402898ERR178184
402837402837ERR178183
402798402798ERR178182
402403402403ERR178181
402078402078ERR178180
401363401363ERR178179
401082401082ERR178178
400896400896ERR178177
100446100446ERR178176
702566702566ERR178175
702328702328ERR178174
700851700851ERR178173
602206602206ERR178172
505545505545ERR178171
505148505148ERR178170
504718504718ERR178169
504528504528ERR178168
504324504324ERR178167
504180504180ERR178166
503331503331ERR178165
500989500989ERR178164
500982500982ERR178163
403778403778ERR178162
403728403728ERR178161
403276403276ERR178160
403066403066ERR178159
402924402924ERR178158
402635402635ERR178157
402617402617ERR178156
401553401553ERR178155
302302302302ERR178154
202474202474ERR178153
202374202374ERR178152
200696200696ERR178151
200232200232ERR178150
202387202387ERR178149
200499200499ERR178148

Relationship of MLST structure of Escherichia coli species to genomic organisation complexity

Sample

Strain

Run Accession

15313MT1093ERR135686
10497MT1151ERR135687
10676MT1086ERR135688
10740MT1159ERR135689
11327MT295ERR135690
11979MT95ERR135691
1200MT353ERR135692
12022MT59ERR135693
12201MT919ERR135694
12220MT921ERR135695
12515MT117ERR135696
12543MT1204ERR135697
13301MT1783ERR135698
13350MT954ERR135699
13364MT955ERR135700
13424MT1010ERR135701
13483MT1ERR135702
13780MT546ERR135703
13800MT73ERR135704
13809MT12ERR135705
13822MT453ERR135706
13832MT95ERR135707
13834MT88ERR135708
13838MT127ERR135709
14116MT1842ERR135710
14124MT1843ERR135711
14719MT302ERR135712
14939MT1946ERR135713
14973MT12ERR135714
15014MT117ERR135715
15026MT1265ERR135716
16001MT327ERR135717
16007MT1510ERR135718
16009MT1869ERR135719
17832MT1103ERR135720
15146MT95ERR135721
19611MT137ERR135722
19859MT1870ERR135723
15191MT1155ERR135724
19946MT101ERR135725
20163MT1889ERR135726
20164MT1889ERR135727
20231MT1125ERR135728
20319MT155ERR135729
15388MT788ERR135730
15390MT938ERR135731
15406MT421ERR135732
15455MT720ERR135733
15461MT849ERR135734
15470MT1243ERR135735
15510MT12ERR135736
15523MT1008ERR135737
15530MT1240ERR135738
20321MT906ERR135739
27034MT724ERR135740
27040MT101ERR135741
16223MT1840ERR135742
17859MT1839ERR135743
17874MT117ERR135744
18286MT1255ERR135745
18291MT453ERR135746
18321MT1245ERR135747
18336MT1421ERR135748
18341MT73ERR135749
18411MT379ERR135750
18426MT59ERR135751
18449MT573ERR135752
18570MT131ERR135753
18895MT961ERR135754
18988MT1462ERR135755
19327MT1588ERR135756
19339MT12ERR135757
19340MT1587ERR135758
19343MT453ERR135759
1937MT155ERR135760
19526MT1421ERR135761
19743MT1584ERR135762
19765MT35ERR135763
19771MT117ERR135764
19779MT80ERR135765
19792MT127ERR135766
19803MT132ERR135767
19806MT73ERR135768
19814MT135ERR135769
19830MT12ERR135770
19834MT1580ERR135771
19836MT1777ERR135772
20100MT73ERR135773
20122MT95ERR135774
20148MT1641ERR135775
20434MT2015ERR135776
20441MT131ERR135777
20469MT2014ERR135778
20601MT1778ERR135779
21254MT117ERR135780
21440MT1120ERR135781
22131MT80ERR135782
22136MT1858ERR135783
22137MT1947ERR135784
22138MT1948ERR135785
22139MT1949ERR135786
22140MT1950ERR135787
22146MT73ERR135788
22159MT73ERR135789
22160MT641ERR135790
22206MT73ERR135791
22246MT1079ERR135792
2247MT125ERR135793
22497MT73ERR135794
22533MT372ERR135795
22537MT2005ERR135796
22575MT10ERR135797
22577MT1992ERR135798
22589MT10ERR135799
2265MT351ERR135800
22668MT1994ERR135801
2354MT914ERR135802
2358MT915ERR135803
23953MT1250ERR135804
2418MT916ERR135805
27031MT681ERR135806
27035MT2496ERR135807
27043MT219ERR135808
27056MT1611ERR135809
27064MT17ERR135810
27073MT367ERR135811
27080MT101ERR135812
4514MT352ERR135813
4537MT118ERR135814
4542MT1168ERR135815
5020MT1169ERR135816
5215MT93ERR135817
5472MT1152ERR135818
9243MT1171ERR135819
9258MT73ERR135820
9267MT80ERR135821
9272MT127ERR135822
3734MT16ERR135823
3735MT16ERR135824
3836MT21ERR135825
3853MT21ERR135826
3855MT16ERR135827
3856MT21ERR135828
3862MT21ERR135829
3873MT16ERR135830
3881MT21ERR135831
3889MT21ERR135832
4040MT113ERR135833
4400MT113ERR135834
4406MT113ERR135835
10309MT21ERR135836
14505MT28ERR135837
19064MT28ERR135838
19005MT174ERR135839
2172MT113ERR135840
3173MT21ERR135841
3748MT21ERR135842
3752MT113ERR135843
15302MT21ERR135844
15967MT21ERR135845
19623MT29ERR135846
19940MT29ERR135847
19981MT21ERR135848
19996MT21ERR135849
20165MT21ERR135850
20226MT21ERR135851
20239MT21ERR135852
27058MT2538ERR135853
4659_MT3502-2ERR162678
4658_MT3461-2ERR162677
4657_MT3391-3ERR162676
4656_MT3062-1ERR162675
4655_MT2392-1ERR162674
4654_MT2932-2ERR162673
4653_MT2381-8ERR162672
4652_MT2252-4ERR162671
4651_MT2071-1ERR162670
4650_MT1931-2ERR162669
4649_MT1871-1ERR162668
4648_MT1711-4ERR162667
4647_MT1582-4ERR162666
4646_MT1461-1ERR162665
4645_MT1112-6ERR162664
4644_MT0621-6ERR162663
4643_MT0471-1ERR162662
4642_MT0421-1ERR162661
4641_MT0202-1ERR162660
4424_MT631/89ERR162659
4320_MT2198-77ERR162658
4271_MT410/89ERR162657
3909_MTRW1993ERR162656
3904_MTIMT3904ERR162655
3898_MTIMT3898ERR162654
3887_MTRW1751ERR162653
3875_MT570/89ERR162652
3874_MTIMT3874ERR162651
3870_MTGS0845-1ERR162650
3861_MTGS0481-1ERR162649
3857_MTIMT3857ERR162648
3846_MTIMT3846ERR162647
3837_MTIMT3837ERR162646
3813_MTC3426ERR162645
3804_MTRW2030ERR162644
3803_MTRW2297ERR162643
3785_MTS102-9ERR162642
3778_MTRW2087ERR162641
3753_MT900105ERR162640
3749_MTIHIT1706ERR162639
3741_MT83-574ERR162638
3540_MT6549ERR162637
3188_MT72/90-56ERR162636
2247_MTZ205ERR162631
2141_MTZ 311-94ERR162630
1947_MTIMT1947ERR162629
489_MTIHIT2169ERR162628
476_MTIHIT0597ERR162627
5076_MTAS4037ERR162694
5075_MTAS4025ERR162693
5074_MTAS4024ERR162692
5073_MTAS4019ERR162691
5072_MTAS3998ERR162690
5071_MTAS3958ERR162689
5070_MTAS3955ERR162688
5069_MTAS3953ERR162687
5068_MTAS3935ERR162686
5067_MTAS3934ERR162685
5066_MTAS3837ERR162684
5047_MTRW1374ERR162683
4663_MT4281-7ERR162682
4662_MT4051-6ERR162681
4661_MT3941-1ERR162680
4660_MT3632-2ERR162679
3153_MT537/89ERR162633
9941_MTI 536/1ERR162720
9933_MTI 525/1ERR162719
9929_MTI 519/1ERR162718
9915_MTI 499/1ERR162717
9913_MTI 491/1bERR162716
9912_MTI 491/1aERR162715
9882_MTI 454/2ERR162714
9849_MTI 415/1ERR162713
9800_MTI 351/3ERR162712
9763_MTI 313/3ERR162711
9757_MTI308/1ERR162710
6550_MTCh BF02. 03008-4ERR162707
3174_MTRW2174ERR162635
3168_MTIHIT2087ERR162634
24798_MTVB 938310ERR163892
17433_MTVB 977549 VM/09/27ERR163891
18354_MTVM/14/81 VB 977411.2ERR163890
19205_MTS17/ESBLERR163889
19224_MTE 467 (ST 131)ERR163888
21200_MTEF1353ERR163887
24495_MTVB 933328ERR163886
22073_MTVB 998118.1ERR163885
17877_MTVB 961231 VM/13/43ERR163884
17887_MTVB 964041.2 VM/13/56ERR163883
20610_MTVB 962116ERR163882
23463_MTM17 cefoERR163881
21183_MTEF1335ERR163880
16316_MT32 - 2823 EDERR163879
21670_MTJB-10ERR163854
21664_MTJB-4ERR163853
20337_MTIMT20337ERR163850
20245_MTIMT20245ERR163849
20217_MTIMT20217ERR163848
19947_MTIMT19947ERR163847
19648_MTIMT19648ERR163846
19636_MTIMT19636ERR163845
19615_MTIMT19615ERR163844
15977_MTIMT15977ERR163839
15922_MTIMT15922ERR163838
15915_MTIMT15915ERR163837
15911_MTIMT15911ERR163836
15301_MTIMT15301ERR163835
15150_MT2.1d März 08 Nr.214ERR163894
12556_MT6492-42ERR163893
15989_MTIMT15989ERR163843
15988_MTIMT15988ERR163842
15987_MTIMT15987ERR163841
15981_MTIMT15981ERR163840
3836phi3800T3IMT3836phi3800 T3ERR163878
3836phi3800T2IMT3836phi3800 T2ERR163877
3836phi3800T1IMT3836phi3800 T1ERR163876
BL21phi25859BL21phi25859 T1ERR163875
19981phi3538BIMT19981phi3538deltastx2::cat T3ERR163874
19981phi3538AIMT19981phi3538deltastx2::cat T1ERR163873
C600phi3538C600phi3538 deltastx2::catERR163872

Defining EPEC: evolution, global distribution and effector inventory

Sample

Strain

Run Accession

epc006912240542ERR144951
epc006812240268ERR144950
epc006712140286ERR144949
epc006612080252ERR144948
epc006511300360ERR144947
epc006411140299ERR144946
epc0063LH-13ERR144945
epc0062LH-12ERR144944
epc0061LH-11ERR144943
epc0060LH-10ERR144942
epc0059LH-9ERR144941
epc0058LH-8ERR144940
epc0057LH-7ERR144939
epc0056LH-6ERR144938
epc0055LH-5ERR144937
epc0054LH-4ERR144936
epc0053LH-3ERR144935
epc0052LH-2ERR144934
epc0051JB-13ERR144933
epc0050JB-12ERR144932
epc0049JB-11ERR144931
epc0048JB-9ERR144930
epc0047JB-8ERR144929
epc0046JB-7ERR144928
epc0045JB-6ERR144927
epc0044JB-5ERR144926
epc0043JB-3ERR144925
epc0042JB-2ERR144924
epc0041JB-1ERR144923
epc0040736/80ERR144922
epc0039160/91ERR144921
epc0038261/78ERR144920
epc003742ERR144919
epc003644ERR144918
epc003546ERR144917
epc003439ERR144916
epc003335ERR144915
epc003224ERR144914
epc003130ERR144913
epc003021ERR144912
epc002917ERR144911
epc002812ERR144910
epc0027226/85ERR144909
epc0026124/84ERR144908
epc0025277/84ERR144907
epc0024573/89ERR144906
epc0023115/84ERR144905
epc002228/84ERR144904
epc0021#6/34ERR144903
epc0020sigERR144902
epc001953/85ERR144901
epc001844/86ERR144900
epc0017174/88ERR144899
epc0016262ERR144898
epc0015280/84ERR144897
epc001438ERR144896
epc001315ERR144895
epc00124ERR144894
epc00112ERR144893
epc001036ERR144892
epc0009109ERR144891
epc0008112ERR144890
epc000780ERR144889
epc000679ERR144888
epc0005118ERR144887
epc000472ERR144886
epc000357ERR144885
epc000219ERR144884
epc000130ERR144883
epc008712800532ERR144969
epc008612700301ERR144968
epc008512620792ERR144967
epc008412620791ERR144966
epc008312620790ERR144965
epc008212480201ERR144964
epc008112480200ERR144963
epc008012440460ERR144962
epc007912440459ERR144961
epc007812400552ERR144960
epc007712400263ERR144959
epc007612380538ERR144958
epc007512380512ERR144957
epc007412340684ERR144956
epc007312340683ERR144955
epc007212340682ERR144954
epc007112340681ERR144953
epc007012340337ERR144952
85-170ICC608ERR180906
4581-5_89NT:H40ERR180905
3941-1_89NT:H34ERR180904
Ec323_02NT:H8ERR180903
2071-1_89NT:H-ERR180902
Ec413_03O157:H16ERR180901
125_IVO145:H45ERR180900
84_IIO142:H34ERR180899
Ec172_02O132:H8ERR180898
BA4182O125:H6ERR180896
2741-5_85O125:H6ERR180895
BA3733O119:H19ERR180894
BA2482O119:H11ERR180893
BA3157O119:H2ERR180892
BA4009O114:H25ERR180891
BA3690O111:H38ERR180889
BA1887O111:H38ERR180888
BA1649O111:H38ERR180887
BA4192O111:H25ERR180886
BA956O111:H15ERR180885
Ec134_03O111:H9ERR180884
3121-6_85O111:H9ERR180883
BA714O111:H-ERR180882
0421-1_89O101:H33ERR180881
BA4013O88:H-ERR180880
1331-2_89NT:H-ERR180879
3881-3_89O63:H6ERR180878
3041-1_85O55:H7ERR180875
Ec1757_01O51:H40ERR180874
3102-1_89O51:H40ERR180873
3062-2_89O51:H40ERR180872
4361-2_89O51:H40ERR180871
1931-2_89O51:H40ERR180870
1711-4_89O51:H40ERR180869
0151-1_85O51:H40ERR180868
1221-1O51:H-ERR180867
Ec108_03O49:H10ERR180866
1871-1_89O34:H-ERR180865
BA2459O26:H11ERR180864
BA2103O26:H11ERR180863
1551-3_85O26:H-ERR180862
1461-1_89O11:H16ERR180861
102_IO11:H-ERR180860
3991-1_89b3991-1/89ERR180859
3991-1_89a3991-1/89ERR180858
116_I_1b116 I 1ºERR180857
4601-1_85b4601-1/85ERR180856
3871-1_85b3871-1/85ERR180855
1211-1_85b1211-1/85ERR180854
2581-2_85b2581-2/85ERR180853
0161-2_85b0161-2/85ERR180852
0111-1_85b0111-1/85ERR180851
0071-5_85b0071-5/85ERR180850
0071-2_85b0071-2/85ERR180849
0041-1_85b0041-1/85ERR180848
10_O142_H3410ERR180847
9_O142_H349ERR180846
7_O142_H347ERR180845
2_O142_H62ERR180844
29_0128_H229ERR180843
25_0128_H225ERR180842
13_O128_H213ERR180841
2_O127_H402ERR180840
1_O127_H401ERR180839
7_O127_H67ERR180838
6_O127_H66ERR180837
9_O119_H69ERR180836
1_O119_H61ERR180835
16_O111_H216ERR180834
6_O86_H346ERR180833
5_O86_H345ERR180832
116_I_1a116 I 1ºERR180831
150_IIa150 IIERR180830
105_Ia105 IERR180829
4601-1_85a4601-1/85ERR180828
3871-1_85a3871-1/85ERR180827
1211-1_85a1211-1/85ERR180826
2581-2_85a2581-2/85ERR180825
0161-2_85a0161-2/85ERR180824
0111-1_85a0111-1/85ERR180823
0071-5_85a0071-5/85ERR180822
0071-2_85a0071-2/85ERR180821
0041-1_85a0041-1/85ERR180820
TL-000128O25:H2ERR197198
TL-000127O128:H2ERR197197
TL-000123O156:H8ERR197196
TL-000122O75:HNERR197195
TL-000117O131:HNERR197194
13920501O49ERR197193
13860321O86ERR197192
13580160O UnidentifiableERR197191
13580157O49ERR197190
13540537O49ERR197189
13460376O125acERR197188
13460375O UnidentifiableERR197187
13420664O55ERR197186
13280274O145ERR197185
12820518O Rough:H41ERR197177
12800533O Unidentifiable:H18ERR197176
03440428O25ERR197268
03920500O145:H23ERR197267
04240364O145:H34ERR197266
03820357O125acERR197265
02840381O102ERR197264
03280202O?ERR197263
03300101O?ERR197262
03900336O?ERR197261
03340404O?:H6ERR197260
02880248O115ERR197259
03480450O145:H34ERR197258
03840284O145:H23ERR197257
04120341O126:H6ERR197256
02000105O?ERR197255
04020318O126:H6ERR197254
04260415O?:H19ERR197253
01860424O126ERR197252
04180086O153ERR197251
03000293O177ERR197250
03320363O145:H25ERR197249
03740606O66:H8ERR197248
03620480O145:H11ERR197247
04180082O?ERR197246
03280201O49:H10ERR197245
04160262O145:H23ERR197244
03340403O145:H34ERR197243
03580700O136:H7ERR197242
03220249O?:H6ERR197241
03440427O?:H16ERR197240
03900330O?:H34ERR197239
2018_0532O157:H7ERR197238
2018_0531O157:H7ERR197237
2022_0713O157:H?ERR197236
2180_0426O157:H?ERR197235
2106_0780O157:H7ERR197234
2116_0486O157:H7ERR197233
2066_0722O?:H?ERR197232
2040_0419O157:H8ERR197231
2146_0191O125ac:H?ERR197230
2102_0342O88:H-ERR197229
2132_0382O?:H6ERR197228
2164_0323O88:H28ERR197227
2186_0383O49:H?ERR197226
2156_752O?:H4ERR197225
2154_0780O157:H?ERR197224
2130_0225O157:H?ERR197223
2158_0301O157:H7ERR197222
2056_0546O157:H4ERR197221
TL-000200O46:HNERR197220
TL-000196O12:HMERR197219
TL-000192O23:H15ERR197218
TL-000191O18:HNERR197217
TL-000189ON:HNERR197216
TL-000188O115:NMERR197215
TL-000183ON:HNERR197214
TL-000178O128:H2ERR197213
TL-000173O66:HNERR197212
TL-0001710145:HNERR197211
TL-000168O86:H34ERR197210
TL-000167ON:HNERR197209
TL-000166O8:H41ERR197208
TL-000164O153:HNERR197207
TL-000160O118:H8ERR197206
TL-000159O15:HNERR197205
TL-000155O26:HNERR197204
TL-000152O96:HNERR197203
TL-000147O127:H40ERR197202
TL-000142O55:H7ERR197201
TL-000137O125:H6ERR197200
TL-000132O55:H7ERR197199
13240285O157ERR197184
13160272O145ERR197183
13140293O UnidentifiableERR197182
13120295O161ERR197181
13060173O UnidentifiableERR197180
13060172O UnidentifiableERR197179
13020355O145ERR197178

Comparative genome sequence analysis of the globally disseminated Escherichia coli ST131 lineage

Sample

Strain

Run Accession

P146ECP146ERR161313
P112ECP112ERR161312
HVR831110728271ERR161311
P56ECP56ERR161310
P53ECP53ERR161309
HVM522010032085ERR161308
P50ECP50ERR161307
HVM52010031282ERR161306
S79ECS79ERR161305
S77ECS77ERR161304
S65ECS65ERR161303
S37ECS37ERR161302
S32ECS32ERR161301
S31ECS31ERR161300
S6ECS6ERR161299
S135ECS135ERR161298
S134ECS134ERR161297
S133ECS133ERR161296
S132ECS132ERR161295
S131ECS131ERR161294
S130ECS130ERR161293
S129ECS129ERR161292
S128ECS128ERR161291
S127ECS127ERR161290
S126ECS126ERR161289
S125ECS125ERR161288
S124ECS124ERR161287
S123ECS123ERR161286
S122ECS122ERR161285
S121ECS121ERR161284
S120ECS120ERR161283
S119ECS119ERR161282
S118ECS118ERR161281
S117ECS117ERR161280
S116ECS116ERR161279
S115ECS115ERR161278
S114ECS114ERR161277
S113ECS113ERR161276
S112ECS112ERR161275
S111ECS111ERR161274
S110ECS110ERR161273
S109ECS109ERR161272
S108ECS108ERR161271
S107ECS107ERR161270
S106ECS106ERR161269
S105ECS105ERR161268
S104ECS104ERR161267
S103ECS103ERR161266
S102ECS102ERR161265
S101ECS101ERR161264
S100ECS100ERR161263
S99ECS99ERR161262
S98ECS98ERR161261
S97ECS97ERR161260
S96ECS96ERR161259
S95ECS95ERR161258
S94ECS94ERR161257
S93ECS93ERR161256
S92ECS92ERR161255
B36ECB36ERR161254
MS2493MS2493ERR161253
MS2481MS2481ERR161252
S53ECS53ERR161251
S47ECS47ERR161250
S43ECS43ERR161249
S39ECS39ERR161248
S34ECS34ERR161247
S30ECS30ERR161246
S26ECS26ERR161245
S24ECS24ERR161244
S22ECS22ERR161243
S19ECS19ERR161241
S15ECS15ERR161240
S12ECS12ERR161239
S11ECS11ERR161238
S10ECS10ERR161237
S5ECS5ERR161236
S2ECS2ERR161235
S1ECS1ERR161234
HVM31892010100177ERR161329
HVM30172010099319ERR161328
HVM27572010096616ERR161327
HVR2496761034ERR161326
HVM22892010078422ERR161325
HVM20492010077800ERR161324
HVM20442010077749ERR161323
HVM19972010081517ERR161322
HVM16192010073619ERR161321
HVM12992010070931ERR161320
HVM11812010068180ERR161319
HVM11472010066864ERR161318
HVM8342010039553ERR161317
HVM8262010039024ERR161316
HVM2772010035103ERR161315
P189ECP189ERR161314
S21ECS21ERR161242

Whole genome sequencing of naturally isolated Escherichia coli from nursing homes in Ireland

Sample

Strain

Run Accession

MU050574HUnknownERR191670
MU016756VUnknownERR191669
MU027534QUnknownERR191668
MU005425UnknownERR191667
MU017039UnknownERR191666
MU039876ZUnknownERR191665
MU058349LUnknownERR191664
MU022181BUnknownERR191663
MU048282SUnknownERR191662
MU033271EUnknownERR191661
MJ003268PUnknownERR191660
MU011945CUnknownERR191659
8501UnknownERR191658
MU004181YUnknownERR191657
29812UnknownERR191656
U19126UnknownERR191655
MU058353KUnknownERR191654
MD055246FUnknownERR191653
MU021025CUnknownERR191652
U21657UnknownERR191651
MU019981VUnknownERR191650
MU011366JUnknownERR191649
30125UnknownERR191648
MU032956FUnknownERR191647
MJ005670WUnknownERR191646
MU029758GUnknownERR191645
MU017170RUnknownERR191644
MU000910NUnknownERR191643
MU028688WUnknownERR191636
MU029041DUnknownERR191635
MU048289YUnknownERR191634
MU000300CUnknownERR191729
MU053911GUnknownERR191728
MU003581QUnknownERR191727
MU008021MUnknownERR191726
3339UnknownERR191725
MU027565LUnknownERR191724
MU002849LUnknownERR191723
2003UnknownERR191722
MU002486SUnknownERR191721
MU051326XUnknownERR191720
MJ011889KUnknownERR191719
MU053690QUnknownERR191718
U20342UnknownERR191717
MD055275QUnknownERR191716
U15584UnknownERR191715
MR000507MUnknownERR191714
2662UnknownERR191713
34110UnknownERR191712
MU034398RUnknownERR191711
5606UnknownERR191710
MU012872TUnknownERR191709
MU021865RUnknownERR191708
25124UnknownERR191707
MR002251MUnknownERR191706
MU018333LUnknownERR191705
MU048939EUnknownERR191704
MU012029MUnknownERR191703
MU041878DUnknownERR191702
MU006446LUnknownERR191701
MU005597JUnknownERR191700
MR000949VUnknownERR191699
MU004147LUnknownERR191698
22520UnknownERR191697
MU024385HUnknownERR191696
MU041605KUnknownERR191695
MU053687KUnknownERR191694
MU023102SUnknownERR191693
MD055276EUnknownERR191692
MR002177KUnknownERR191691
MU022111QUnknownERR191690
MU042296QUnknownERR191689
MU010471FUnknownERR191688
MU053934HUnknownERR191687
MU008790XUnknownERR191686
MU014830ZUnknownERR191685
MU025107CUnknownERR191684
MU001243AUnknownERR191683
MU012087GUnknownERR191682
MU057032WUnknownERR191681
MU024105BUnknownERR191680
MU017266PUnknownERR191679
MU015790AUnknownERR191678
MU053853HUnknownERR191677
MU024016LUnknownERR191676
MU010892CUnknownERR191675
MU002697CUnknownERR191674
MU028412DUnknownERR191673
MU016066BUnknownERR191672
U13882UnknownERR191671
MU014911XUnknownERR191642
MU032389MUnknownERR191641
U17398UnknownERR191640
MU032489AUnknownERR191639
32306UnknownERR191638
MU013648QUnknownERR191637

Antimicrobial resistance modifiers studied by TraDIS

Sample

Strain

Run Accession

UPEC_LibST131ERR237768
UPEC_Lib_5primeST131ERR237767
3_UPEC_PolB_2ST131ERR237920
3_UPEC_PolB_2ST131ERR237818
3_UPEC_Amk_2ST131ERR237919
3_UPEC_Amk_2ST131ERR237817
3_UPEC_Rif_2ST131ERR237918
3_UPEC_Rif_2ST131ERR237816
3_UPEC_Nov_2ST131ERR237917
3_UPEC_Nov_2ST131ERR237815
3_UPEC_Ctx_2ST131ERR237916
3_UPEC_Ctx_2ST131ERR237814
3_UPEC_Cfx_2ST131ERR237915
3_UPEC_Cfx_2ST131ERR237813
3_UPEC_Mer_2ST131ERR237914
3_UPEC_Mer_2ST131ERR237812
3_UPEC_Col_2ST131ERR237913
3_UPEC_Col_2ST131ERR237811
3_UPEC_Tob_2ST131ERR237912
3_UPEC_Tob_2ST131ERR237810
3_UPEC_Dox_2ST131ERR237911
3_UPEC_Dox_2ST131ERR237809
3_UPEC_CTRL_2ST131ERR237910
3_UPEC_CTRL_2ST131ERR237808
3_UPEC_PolB_1ST131ERR237909
3_UPEC_PolB_1ST131ERR237807
3_UPEC_Amk_1ST131ERR237908
3_UPEC_Amk_1ST131ERR237806
3_UPEC_Rif_1ST131ERR237907
3_UPEC_Rif_1ST131ERR237805
3_UPEC_Nov_1ST131ERR237906
3_UPEC_Nov_1ST131ERR237804
3_UPEC_Ctx_1ST131ERR237905
3_UPEC_Ctx_1ST131ERR237803
3_UPEC_Cfx_1ST131ERR237904
3_UPEC_Cfx_1ST131ERR237802
3_UPEC_Mer_1ST131ERR237903
3_UPEC_Mer_1ST131ERR237801
3_UPEC_Col_1ST131ERR237902
3_UPEC_Col_1ST131ERR237800
3_UPEC_Tob_1ST131ERR237901
3_UPEC_Tob_1ST131ERR237799
3_UPEC_Dox_1ST131ERR237900
3_UPEC_Dox_1ST131ERR237798
3_UPEC_CTRL_1ST131ERR237899
3_UPEC_CTRL_1ST131ERR237797
5_UPEC_PolB_2ST131ERR237898
5_UPEC_PolB_2ST131ERR237796
5_UPEC_Amk_2ST131ERR237897
5_UPEC_Amk_2ST131ERR237795
5_UPEC_Rif_2ST131ERR237896
5_UPEC_Rif_2ST131ERR237794
5_UPEC_Nov_2ST131ERR237895
5_UPEC_Nov_2ST131ERR237793
5_UPEC_Ctx_2ST131ERR237894
5_UPEC_Ctx_2ST131ERR237792
5_UPEC_Cfx_2ST131ERR237893
5_UPEC_Cfx_2ST131ERR237791
5_UPEC_Mer_2ST131ERR237892
5_UPEC_Mer_2ST131ERR237790
5_UPEC_Col_2ST131ERR237891
5_UPEC_Col_2ST131ERR237789
5_UPEC_Tob_2ST131ERR237890
5_UPEC_Tob_2ST131ERR237788
5_UPEC_Dox_2ST131ERR237889
5_UPEC_Dox_2ST131ERR237787
5_UPEC_CTRL_2ST131ERR237888
5_UPEC_CTRL_2ST131ERR237786
5_UPEC_PolB_1ST131ERR237887
5_UPEC_PolB_1ST131ERR237785
5_UPEC_Amk_1ST131ERR237886
5_UPEC_Amk_1ST131ERR237784
5_UPEC_Rif_1ST131ERR237885
5_UPEC_Rif_1ST131ERR237783
5_UPEC_Nov_1ST131ERR237884
5_UPEC_Nov_1ST131ERR237782
5_UPEC_Ctx_1ST131ERR237883
5_UPEC_Ctx_1ST131ERR237781
5_UPEC_Cfx_1ST131ERR237882
5_UPEC_Cfx_1ST131ERR237780
5_UPEC_Mer_1ST131ERR237881
5_UPEC_Mer_1ST131ERR237779
5_UPEC_Col_1ST131ERR237880
5_UPEC_Col_1ST131ERR237778
5_UPEC_Tob_1ST131ERR237879
5_UPEC_Tob_1ST131ERR237777
5_UPEC_Dox_1ST131ERR237878
5_UPEC_Dox_1ST131ERR237776
5_UPEC_CTRL_1ST131ERR237877
5_UPEC_CTRL_1ST131ERR237775
  • A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

    Crossman LC, Chaudhuri RR, Beatson SA, Wells TJ, Desvaux M, Cunningham AF, Petty NK, Mahon V, Brinkley C, Hobman JL, Savarino SJ, Turner SM, Pallen MJ, Penn CW, Parkhill J, Turner AK, Johnson TJ, Thomson NR, Smith SG and Henderson IR

    Journal of bacteriology 2010;192;21;5822-31

  • Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042.

    Chaudhuri RR, Sebaihia M, Hobman JL, Webber MA, Leyton DL, Goldberg MD, Cunningham AF, Scott-Tucker A, Ferguson PR, Thomas CM, Frankel G, Tang CM, Dudley EG, Roberts IS, Rasko DA, Pallen MJ, Parkhill J, Nataro JP, Thomson NR and Henderson IR

    PloS one 2010;5;1;e8801

  • Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

    Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, Parkhill J and Frankel G

    Journal of bacteriology 2009;191;1;347-54

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/77g85goi