Acinetobacter

Acinetobacter baumanii is increasingly being recognised as an important nosocomial pathogen. Of importance is its extensive antimicrobial repertoire.

Project

This data is from bacterial isolates collected in the BSAC Resistance Surveillance Project. Please see bsacsurv.org for details and availability.

Studies

Antimicrobial resistance modifiers studied by TraDIS
SampleStrainRun Accession
Acinetobacter_TraDISUnknownERR506070
Tig2_25_E2_AbAcinetobacter baumanii 062 Tig2_25_E2ERR971114
Tig2_25_E2_AbAcinetobacter baumanii 062 Tig2_25_E2ERR971065
Tig1_25_E2_AbAcinetobacter baumanii 062 Tig1_25_E2ERR971113
Tig1_25_E2_AbAcinetobacter baumanii 062 Tig1_25_E2ERR971064
Amk2_25_E2_AbAcinetobacter baumanii 062 AmK2_25_E2ERR971112
Amk2_25_E2_AbAcinetobacter baumanii 062 AmK2_25_E2ERR971063
Amk1_25_E2_AbAcinetobacter baumanii 062 AmK1_25_E2ERR971111
Amk1_25_E2_AbAcinetobacter baumanii 062 AmK1_25_E2ERR971062
Amk2_10_E2_AbAcinetobacter baumanii 062 AmK2_10_E2ERR971110
Amk2_10_E2_AbAcinetobacter baumanii 062 AmK2_10_E2ERR971061
Amk1_10_E2_AbAcinetobacter baumanii 062 AmK1_10_E2ERR971109
Amk1_10_E2_AbAcinetobacter baumanii 062 AmK1_10_E2ERR971060
MHB2_E2_AbAcinetobacter baumanii 062 CTRL2_E2ERR971108
MHB2_E2_AbAcinetobacter baumanii 062 CTRL2_E2ERR971059
MHB1_E2_AbAcinetobacter baumanii 062 CTRL1_E2ERR971107
MHB1_E2_AbAcinetobacter baumanii 062 CTRL1_E2ERR971058
PolB2_25_E1_AbAcinetobacter baumanii 062 PolB2_25_E1ERR971106
PolB2_25_E1_AbAcinetobacter baumanii 062 PolB2_25_E1ERR971057
PolB1_25_E1_AbAcinetobacter baumanii 062 PolB1_25_E1ERR971105
PolB1_25_E1_AbAcinetobacter baumanii 062 PolB1_25_E1ERR971056
PolB2_10_E1_AbAcinetobacter baumanii 062 PolB2_10_E1ERR971104
PolB2_10_E1_AbAcinetobacter baumanii 062 PolB2_10_E1ERR971055
PolB1_10_E1_AbAcinetobacter baumanii 062 PolB1_10_E1ERR971103
PolB1_10_E1_AbAcinetobacter baumanii 062 PolB1_10_E1ERR971054
MHB2_E1_AbAcinetobacter baumanii 062 CTRL2_E1ERR971102
MHB2_E1_AbAcinetobacter baumanii 062 CTRL2_E1ERR971053
MHB1_E1_AbAcinetobacter baumanii 062 CTRL1_E1ERR971101
MHB1_E1_AbAcinetobacter baumanii 062 CTRL1_E1ERR971052
Whole genome sequencing of colistin resistant Klebsiella and Acinetobacter
SampleStrainRun Accession
2952STDY5804121Acinetobacter baumannii 062ERR586980
2952STDY5804120Acinetobacter baumannii 266ERR586979
2952STDY5804119Acinetobacter baumannii 266ERR586978
2952STDY5804118Acinetobacter baumannii 266ERR586977
2952STDY5804117Acinetobacter baumannii 266ERR586976
2952STDY5804116Acinetobacter baumannii 266ERR586975
2952STDY5804115Acinetobacter baumannii 266ERR586974
2952STDY5804114Acinetobacter baumannii 266ERR586973
2952STDY5804113Acinetobacter baumannii 266ERR586972
2952STDY5804112Acinetobacter baumannii 266ERR586971
2952STDY5804111Acinetobacter baumannii 266ERR586970
2952STDY5804110Acinetobacter baumannii 266ERR586969
2952STDY5804109Acinetobacter baumannii 266ERR586968
2952STDY5804108Acinetobacter baumannii 266ERR586967
2952STDY5804107Acinetobacter baumannii 266ERR586966
2952STDY5804105Acinetobacter baumannii 266ERR586965
2952STDY5804104Acinetobacter baumannii 266ERR586964
2952STDY5804103Acinetobacter baumannii 266ERR586963
2952STDY5804102Acinetobacter baumannii 266ERR586962
2952STDY5804101Acinetobacter baumannii 266ERR586961
2952STDY5804100Acinetobacter baumannii 266ERR586960
2952STDY5804099Acinetobacter baumannii 266ERR586959
2952STDY5804098Acinetobacter baumannii 266ERR586958
2952STDY5804097Acinetobacter baumannii 266ERR586957
2952STDY5804096Acinetobacter baumannii 266ERR586956
2952STDY5804095Acinetobacter baumannii 266ERR586955
2952STDY5804094Acinetobacter baumannii 062ERR586954
2952STDY5804093Acinetobacter baumannii 062ERR586953
2952STDY5804092Acinetobacter baumannii 062ERR586952
2952STDY5804091Acinetobacter baumannii 062ERR586951
2952STDY5804090Acinetobacter baumannii 062ERR586950
2952STDY5804089Acinetobacter baumannii 062ERR586949
2952STDY5804088Acinetobacter baumannii 062ERR586948
2952STDY5804087Acinetobacter baumannii 062ERR586947
2952STDY5804086Acinetobacter baumannii 062ERR586946
2952STDY5804085Acinetobacter baumannii 062ERR586945
2952STDY5804084Acinetobacter baumannii 062ERR586944
2952STDY5804083Acinetobacter baumannii 062ERR586943
2952STDY5804082Acinetobacter baumannii 062ERR586942
2952STDY5804081Acinetobacter baumannii 062ERR586941
2952STDY5804080Acinetobacter baumannii 062ERR586940
2952STDY5804079Acinetobacter baumannii 062ERR586939
2952STDY5804078Acinetobacter baumannii 062ERR586938
2952STDY5804077Acinetobacter baumannii 062ERR586937
2952STDY5804076Acinetobacter baumannii 062ERR586936
2952STDY5804075Acinetobacter baumannii 062ERR586935
2952STDY5804074Acinetobacter baumannii 062ERR586934
2952STDY5804073Acinetobacter baumannii 062ERR586933
2952STDY5804072Acinetobacter baumannii 062ERR586932
2952STDY5804071Acinetobacter baumannii 062ERR586931
2952STDY5804070Acinetobacter baumannii 062ERR586930
2952STDY5804069Acinetobacter baumannii 062ERR586929
2952STDY5804068Acinetobacter baumannii 062ERR586928
2952STDY5804067Acinetobacter baumannii 062ERR586927
2952STDY5804066Acinetobacter baumannii 062ERR586926
2952STDY5804065Acinetobacter baumannii 062ERR586925
2952STDY5804064Acinetobacter baumannii 062ERR586924
2952STDY5804063Acinetobacter baumannii 062ERR586923
2952STDY5804062Acinetobacter baumannii 062ERR586922
2952STDY5804106Acinetobacter baumannii 266ERR662807
Sequencing bacterial genomes
SampleStrainRun Accession
AB223UnknownERR698913
Colistin resistance of Acinetobacter baumannii with RNAseq
SampleStrainRun Accession
24_06224_062 Acinetobacter baumanniiERR976705
23_06223_062 Acinetobacter baumanniiERR976704
20_06220_062 Acinetobacter baumanniiERR976703
19_06219_062 Acinetobacter baumanniiERR976702
18_06218_062 Acinetobacter baumanniiERR976701
17_06217_062 Acinetobacter baumanniiERR976700
6_0626_062 Acinetobacter baumanniiERR976699
5_0625_062 Acinetobacter baumanniiERR976698
110_062110_062 Acinetobacter baumanniiERR976697
109_062109_062 Acinetobacter baumanniiERR976696
26_06226_062 Acinetobacter baumanniiERR976695
25_06225_062 Acinetobacter baumanniiERR976694
34_06234_062 Acinetobacter baumanniiERR976693
33_06233_062 Acinetobacter baumanniiERR976692
32_06232_062 Acinetobacter baumanniiERR976691
31_06231_062 Acinetobacter baumanniiERR976690
30_06230_062 Acinetobacter baumanniiERR976689
29_06229_062 Acinetobacter baumanniiERR976688
28_06228_062 Acinetobacter baumanniiERR976687
27_06227_062 Acinetobacter baumanniiERR976686
2_0622_062 Acinetobacter baumanniiERR976685
1_0621_062 Acinetobacter baumanniiERR976684
TraDIS to study biofilms in Acinetobacter
SampleStrainRun Accession
3_biofilm3_biofilmERR980558
3_biofilm3_biofilmERR980609
3_wash_153_wash_15ERR980557
3_wash_153_wash_15ERR980608
3_wash_143_wash_14ERR980556
3_wash_143_wash_14ERR980607
3_wash_133_wash_13ERR980555
3_wash_133_wash_13ERR980606
3_wash_123_wash_12ERR980554
3_wash_123_wash_12ERR980605
3_wash_113_wash_11ERR980553
3_wash_113_wash_11ERR980604
3_wash_103_wash_10ERR980552
3_wash_103_wash_10ERR980603
3_wash_93_wash_9ERR980551
3_wash_93_wash_9ERR980602
3_wash_83_wash_8ERR980601
3_wash_83_wash_8ERR980550
3_wash_73_wash_7ERR980549
3_wash_73_wash_7ERR980600
3_wash_63_wash_6ERR980548
3_wash_63_wash_6ERR980599
3_wash_53_wash_5ERR980547
3_wash_53_wash_5ERR980598
3_wash_43_wash_4ERR980546
3_wash_43_wash_4ERR980597
3_wash_33_wash_3ERR980596
3_wash_33_wash_3ERR980545
3_wash_23_wash_2ERR980544
3_wash_23_wash_2ERR980595
3_wash_13_wash_1ERR980543
3_wash_13_wash_1ERR980594
3_MHB3_MHBERR980542
3_MHB3_MHBERR980593
2_biofilm2_biofilmERR980541
2_biofilm2_biofilmERR980592
2_wash_152_wash_15ERR980540
2_wash_152_wash_15ERR980591
2_wash_142_wash_14ERR980539
2_wash_142_wash_14ERR980590
2_wash_132_wash_13ERR980538
2_wash_132_wash_13ERR980589
2_wash_122_wash_12ERR980537
2_wash_122_wash_12ERR980588
2_wash_112_wash_11ERR980536
2_wash_112_wash_11ERR980587
2_wash_102_wash_10ERR980535
2_wash_102_wash_10ERR980586
2_wash_92_wash_9ERR980534
2_wash_92_wash_9ERR980585
2_wash_82_wash_8ERR980533
2_wash_82_wash_8ERR980584
2_wash_72_wash_7ERR980532
2_wash_72_wash_7ERR980583
2_wash_62_wash_6ERR980531
2_wash_62_wash_6ERR980582
2_wash_52_wash_5ERR980530
2_wash_52_wash_5ERR980581
2_wash_42_wash_4ERR980580
2_wash_42_wash_4ERR980529
2_wash_32_wash_3ERR980528
2_wash_32_wash_3ERR980579
2_wash_22_wash_2ERR980527
2_wash_22_wash_2ERR980578
2_wash_12_wash_1ERR980526
2_wash_12_wash_1ERR980577
2_MHB2_MHBERR980576
2_MHB2_MHBERR980525
1_biofilm1_biofilmERR980524
1_biofilm1_biofilmERR980575
1_wash_151_wash_15ERR980523
1_wash_151_wash_15ERR980574
1_wash_141_wash_14ERR980522
1_wash_141_wash_14ERR980573
1_wash_131_wash_13ERR980521
1_wash_131_wash_13ERR980572
1_wash_121_wash_12ERR980571
1_wash_121_wash_12ERR980520
1_wash_111_wash_11ERR980570
1_wash_111_wash_11ERR980519
1_wash_101_wash_10ERR980518
1_wash_101_wash_10ERR980569
1_wash_91_wash_9ERR980517
1_wash_91_wash_9ERR980568
1_wash_81_wash_8ERR980516
1_wash_81_wash_8ERR980567
1_wash_71_wash_7ERR980515
1_wash_71_wash_7ERR980566
1_wash_61_wash_6ERR980514
1_wash_61_wash_6ERR980565
1_wash_51_wash_5ERR980564
1_wash_51_wash_5ERR980513
1_wash_41_wash_4ERR980512
1_wash_41_wash_4ERR980563
1_wash_31_wash_3ERR980511
1_wash_31_wash_3ERR980562
1_wash_21_wash_2ERR980510
1_wash_21_wash_2ERR980561
1_wash_11_wash_1ERR980560
1_wash_11_wash_1ERR980509
1_MHB1_MHBERR980508
1_MHB1_MHBERR980559

Data Use Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale. See our data sharing policy.

Sequencing enquiries

Please address all sequencing enquiries to: pathinfo@sanger.ac.uk

Short-link