PhD Theses

• Identification and Characterisation of Regulatory Elements on Human Chromosome 20q12-13.2
  Akan, Pelin (2006)
  • Pelin Akan's thesis
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• De novo assembly of the var multi-gene family in clinical samples of Plasmodium falciparum
  Assefa, Sammy (2013)
  • Sammy Assefa's thesis
  • tar.gz file
• Studies of the effects of promoter sequence variation on gene expression in human chromosome 22
  Bacha, Jamil (2006)
  • Jamil Bacha's thesis
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• Gene identification and characterisation on the human X chromosome
  Barrett, Ian (2004)
  • Ian Barrett's thesis
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• Survey of RNA editing in the human brain
  Blow, Matthew J (2004)
  • Matthew J Blow's thesis
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• Development of computational methods for analysing proteomic data for genome annotation
  Brosch, Markus (2009)
  • Markus Brosch's thesis
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• Mechanisms of change in protein architecture
  Buljan, Marija (2010)
  • Marija Buljan's thesis
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• Rearrangement breakpoints and viral integration sites in the human genome
  Burford, Deborah (2007)
  • Deborah Burford's thesis
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• Uncovering the role of common and rare variants in migraine
  Calafato, Stella (2012)
  • Stella Calafato's thesis
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• Genetics of the anticoagulant drug warfarin
  Chen, Yen-Yu (Leslie) (2007)
  • Yen-Yu (Leslie) Chen's thesis
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• Protein Domains: New methods for detection and evolutionary analysis
  Coin, Lachlan (2005)
  • Lachlan Coin's thesis
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• Functional and evolutionary analyses of pneumococcal genome variation
  Croucher, Nicholas (2011)
  • Nicholas Croucher's thesis
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• Role of Synapse-Associated Protein 102 in Postsynaptic Signalling, Synaptic Plasticity and Learning
  Cuthbert, Peter (2005)
  • Peter Cuthbert's thesis
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• Generation of a murine ES cell system deficient in microRNA processing for the identification of microRNA targets
  Davis, Matthew (2009)
  • Matthew Davis' thesis
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• The SCL Gene and Transcriptional Control of Haematopoiesis
  Dhami, Pawandeep (2005)
  • Pawandeep Dhami's thesis
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• Development of Chromatin Immuniprecipitation Microarray Technology for the Identification of Regulatory Elements in the Human Genome
  Dillon, Shane (2008)
  • Shane Dillon's thesis
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• The role of regulatory variation in sculpting gene expression across human populations and cell types
  Dimas, Antigone (2009)
  • Antigone Dimas' thesis
  • tar.gz file
• Motif based computational identification of protein subcellular localisation
  Dogruel, Mutlu (2008)
  • Mutlu Dogruel's thesis
  • tar.gz file
• Computational localization of promoters and transcription start sites in mammalian genomes
  Down, Thomas (2003)
  • Thomas Down's thesis
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• Studies on the development and organisation of the nervous system of Caenorhabditis elegans
  Durbin, Richard (1987)
  • Richard Durbin's thesis
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• An Analysis of Transcript Variation in Human Xp11.23
  Eades, Tamsin L (2005)
  • Tamsin L Eades' thesis
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• Genetic Studies of Syndromes of Severe Insulin Resistance and Type 2 Diabetes: a candidate gene approach
  Fawcett, Katherine (2008)
  • Katherine Fawcett's thesis
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• Structural, functional and comparative studies of human chromosome 22q13.31
  Goward, Melanie (2002)
  • Melanie Goward's thesis
  • tar.gz file
• Chromosome 1 map, sequence and variation
  Gregory, Simon (2003)
  • Simon Gregory's thesis
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• Recessive genetic screen for mismatch repair components in BLM-deficient ES cells
  Guo, Ge (2004)
  • Ge Guo's thesis
  • tar.gz file
• Computational Detection and Analysis of Polyadenylation Signals
  Hajarnavis, Ashwin (2005)
  • Ashwin Hajarnavis' thesis
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• Phenotypic and Functional Characterisation of Innate and Adaptive Immune Responses after Mucosal Vaccination
  Hall, Lindsay (2007)
  • Lindsay Hall's thesis
  • tar.gz file
• Prediction and analysis of nucleosome positioning in genomic sequences
  Hasan, Samiul (2003)
  • Samiul Hasan's thesis
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• Genomic variation and evolution of Clostridium difficile
  He, Miao (2011)
  • Miao He's thesis
  • tar.gz file
• Studies in probabilistic sequence alignment and evolution
  Holmes, Ian (1998)
  • Ian Holmes' thesis
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• Genomic variation and evolution of Salmonella enterica serovars Typhi and Paratyphi A
  Holt, Kathryn (2009)
  • Kathryn Holt's thesis
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• Gene predication using a configurable system for the integration of data by Dynamic programming
  Howe, Kevin (2003)
  • Kevin Howe's thesis
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• Physical, transcriptional and comparative mapping on the human X chromosome
  Howell, Gareth (2002)
  • Gareth Howell's thesis
  • tar.gz file
• Positive natural selection in the human genome
  Hu, Min (2012)
  • Min Hu's thesis
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• The functional impact of copy number variation in the human genome.
  Huang, Ni (2011)
  • Ni Huang's thesis
  • tar.gz file
• Computational detection of non-coding RNAs in genomes
  Huang, Yen-Hua (2008)
  • Yen-Hua Huang's thesis
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• Characterization of Cancer Gene Mutations in Human Cancer Cell lines for Correlation with Drug Activity
  Ikediobi, Ogechi (2008)
  • Ogechi Ikediobi's thesis
  • tar.gz file
• Identification of target genes of an erythroid transcription factor complex containing SCL(TAL1)
  Jim, Hau Ling (2008)
  • Hau Ling Jim's thesis
  • tar.gz file
• A role for microRNA-155 in the control of infection
  John, Victoria (2010)
  • Victoria John's thesis
  • tar.gz file
• Using Next-Generation Genomic Datasets In Disease Association
  Jostins, Luke (2012)
  • Luke Jostins' thesis
  • tar.gz file
• Identification of Genetic Differences Between Strains of Campylobacter jejuni
  Kay, Emily (2005)
  • Emily Kay's thesis
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• Investigations into the Rab family of genes and their roles in signalling during vertebrate early development
  Kenyon, Emma (2006)
  • Emma Kenyon's thesis
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• Transposon-mediated Insertional Mutagenesis in Gene Discovery and Cancer
  Kong, Jun (2011)
  • Jun Kong's thesis
  • tar.gz file
• Genome-Wide Translational Control In Fission Yeast
  Lackner, Daniel (2007)
  • Daniel Lackner's thesis
  • tar.gz file
• Karyotype Evolution: Evolutionary Chromosome Rearrangements in Material Homologous to Human Chromosome 22q Studied in the Dog and Gibbon
  Langford, Cordelia (2003)
  • Cordelia Langford's thesis
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• Metabolic capability in host-restricted serovars of Salmonella enterica
  Langridge, Gemma C (2010)
  • Gemma C Langridge's thesis
  • tar.gz file
• Characterisation of bcl11 functions in development using genetically modified mice
  Lee, Song Choon (2008)
  • Song Choon Lee's thesis
  • tar.gz file
• A recessive genetic screen to discover components in miRNA pathways using piggyBac-mediated insertional mutagenesis in Blm-deficient mouse embryonic stem cells
  Li, Meng (2010)
  • Meng Li's thesis
  • tar.gz file
• Reprogramming of T cells to natural killer-like cells upon BCL11B deletion
  Li, Peng (2010)
  • Peng Li's thesis
  • tar.gz file
• Evolutionary Landscape of CpG Island Methylation in X Chromosome Inactivation
  Liu, Mengning (2008)
  • Mengning Liu's thesis
  • tar.gz file
• Identification and Functional Characterisation of a Genetic Subset of Non-Small Cell Lung Cancer
  Mahoney, Claire (2009)
  • Claire Mahoney's thesis
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• The role of microRNAs in neurons - (Also known as Sergei A Manakov)
  Manakou, Siarhei (2011)
  • Siarhei Manakou's thesis
  • tar.gz file
• Analysis of genome-wide, cancer-associated mutation datasets in mouse and human
  Mattison, Jenny (2013)
  • Jenny Mattison's thesis
  • tar.gz file
• Mathematical methods for comparative ab initio gene prediction
  Meyer, Imtraud (2002)
  • Imtraud Meyer's thesis
  • tar.gz file
• Modelling Human Genetic Disorders in Mice
  Migdalska, Anna (2011)
  • Anna Migdalska's thesis
  • tar.gz file
• Analysis of genetic variation data using Ancestral Recombination Graphs
  Minichiello, Mark (2007)
  • Mark Minichiello's thesis
  • tar.gz file
• Evolution and gene regulation of the genomic imprinting mechanism
  Mungall, Andy (2007)
  • Andy Mungall's thesis
  • tar.gz file
• Analysis of the transcriptomes of wild-type and mutant C. elegans
  Nelson, Andrew (2008)
  • Andrew Nelson's thesis
  • tar.gz file
• Regulatory variation and its role in disease
  Nica, Alexandra C (2010)
  • Alexandra C Nica's thesis
  • tar.gz file
• Exploring mutational signatures in twenty-one breast cancers
  Nik-Zainal, Serena (2012)
  • Serena Nik-Zainal's thesis
  • tar.gz file
• The Role of Retinoic Acid Receptors in the Replacement of Oct4 during the Generation of Induced Pluripotent Stem Cells
  Ooi, Jolene (2012)
  • Jolene Ooi's thesis
  • tar.gz file
• Genetic mapping of cellular traits
  Parts, Leopold (2011)
  • Leopold Parts' thesis
  • tar.gz file
• Maps of open chromatin - from genetic signals to function
  Paul, Dirk (2012)
  • Dirk Paul's thesis
  • tar.gz file
• Characterisation of the Transcriptome and Proteome of Salmonella enterica subspecies enterica serovar Typhi
  Perkins, Timothy (2009)
  • Timothy Perkins' thesis
  • tar.gz file
• Defining the Clostridium difficile spo0A regulon and its role in disease and transmission
  Pettit, Laura J (2012)
  • Laura J Pettit's thesis
  • tar.gz file
• Isolation of homozygous mutant mouse embryonic stem cells by selection for copy number increase
  Pettitt, Stephen J (2011)
  • Stephen J Pettitt's thesis
  • tar.gz file
• Analysis of IncHI1 plasmids in Salmonella enterica serovar Typhi
  Phan, Minh-Duy (2009)
  • Minh-Duy Phan's thesis
  • tar.gz file
• Inference and classification of eukaryotic cis-regulatory motifs
  Piipari, Matias (2010)
  • Matias Piipari's thesis
  • tar.gz file
• Computational Analysis of Genomes
  Pocock, Matthew R (2003)
  • Matthew R Pocock's thesis
  • tar.gz file
• The Zebrafish Homologues of JAM-B and JAM-C are Essential for Myoblast Fusion
  Powell, Gareth T (2010)
  • Gareth T Powell's thesis
  • tar.gz file
• Transcriptome characterisation of cercariae and skin-stage schistosomula in the parasitic helminth Schistosoma mansoni.
  Protasio, Anna V (2011)
  • Anna V Protasio's thesis
  • tar.gz file
• Computational detection of gene regulatory signals in human genome sequence
  Ramadass, Aroul S (2004)
  • Aroul S Ramadass' thesis
  • tar.gz file
• Genome Evolution: A study of MHC paralogous genes in the human genome
  Rand, Vikki (2003)
  • Vikki Rand's thesis
  • tar.gz file
• Murine embryonic stem cells as a route towards exploring host-pathogen interactions
  Rossi, Raffaella (2008)
  • Raffaella Rossi's thesis
  • tar.gz file
• Periodic gene expression program of the fission yeast cell cycle
  Rustici, Gabriella (2004)
  • Gabriella Rustici's thesis
  • tar.gz file
• The role of protein interactions in evolution and disease
  Schuster-Bockler, Benjamin (2008)
  • Benjamin Schuster-Bockler's thesis
  • tar.gz file
• The role of the CapZ complex in vertebrate sarcomere integrity
  Scott, Annabelle (2007)
  • Annabelle Scott's thesis
  • tar.gz file
• Efficient sequence assembly and variant calling using compressed data structures
  Simpson, Jared (2012)
  • Jared Simpson's thesis
  • tar.gz file
• Human chromosome 20q12-13.2: Structural, comparative and sequence variation studies
  Stavrides, George (2002)
  • George Stavrides' thesis
  • tar.gz file
• Methods for genome-scale gene perturbation studies of the TRAIL-induced apoptosis pathway in mammalian cell culture
  Sudbery, Ian (2007)
  • Ian Sudbery's thesis
  • tar.gz file
• Copy Number Variation and Schizophrenia
  Tam, Gloria Wing Chi (2008)
  • Gloria Wing Chi Tam's thesis
  • tar.gz file
• Molecular characterisation of the candidate region for bronx waltzer: a mouse model of hearing impairment
  Taylor, Amy (2005)
  • Amy Taylor's thesis
  • tar.gz file
• Analysis of genes controlling notochord development in zebrafish
  Thomas, Kevin (2005)
  • Kevin Thomas' thesis
  • tar.gz file
• Characterization of a Novel Deletion Allele of Brca1
  Thompson, Debrah M (2003)
  • Debrah M Thompson's thesis
  • tar.gz file
• Systematic Analysis of the Evolution and Conservation of Genetic Interactions Using C. elegans as a Model System
  Tischler, Julia (2007)
  • Julia Tischler's thesis
  • tar.gz file
• Identification and Characterisation of Differentially Methylated Regions within the human Major Histocompatibility Complex
  Tomazou, Eleni M (2008)
  • Eleni M Tomazou's thesis
  • tar.gz file
• In silico prediction of Genomic In Islands in microbial genomes Islands
  Vernikos, George (2008)
  • George Vernikos' thesis
  • tar.gz file
• Chromosome-specific Recessive Genetic Screen for Genes Involved in In Vitro Differentiation in Mouse Embyonic Stem Cells
  Wang, Wei (2005)
  • Wei Wang's thesis
  • tar.gz file
• Analysis of short tandem repeat variation in large scale resequencing data
  Whitener, Weldon (2011)
  • Weldon Whitener's thesis
  • tar.gz file
• Application of DNA Microarrays to Assess DNA Replication Timing and Chromosomal Aberrations
  Woodfine, Kathryn (2003)
  • Kathryn Woodfine's thesis
  • tar.gz file
• Genome-wide recessive screens for DNA mismatch repair genes in mouse ES cells
  Xiong, Zikai (2008)
  • Zikai Xiong's thesis
  • tar.gz file
• Biological Investigations through sequence analysis
  Yeats, Corin (2004)
  • Corin Yeats' thesis
  • tar.gz file
• Evolution by Gene Loss?
  Yngvadottir, Bryndis (2008)
  • Bryndis Yngvadottir's thesis
  • tar.gz file
• Identification and analysis of MHC-linked olfactory receptor genes
  Younger, Ruth (2002)
  • Ruth Younger's thesis
  • tar.gz file