Dr Emmanouil Athanasiadis | Visiting Worker - Other

Athanasiadis, Emmanouil

Emmanouil received his BSc in Biomedical Engineering from the Department of Biomedical Engineering of the Technological Educational Institute of Athens in 2004. He received his MSc and PhD in Medical Physics in 2006 and 2010, respectively, from the University of Patras, both funded by the National State Scholarship Foundation of Greece. From 2008 to 2010, he was also awarded with “K. Karatheodoris” scholariship and worked as early stage researcher in Self-organized societies of connectionist intelligent agents capable of learning (SOCIAL), Pythagoras II and Archimedes I research programs. He has participated in a “Marie Curie 3D anatomical functional models for the human musculoskeletal system” proposal as Associate Researcher in Medical Imaging at University Colleague London (UCL) from June to October 2010. From August 2011 to March 2015, as Associate Researcher in Bioinformatics at Biomedical Research Foundation of the Academy of Athens (BRFAA), he carried out research on a FP7 “cooperation” project entitled “PIK3CA Oncogenic Mutations in Breast and Colon Cancers: Development of Targeted Anticancer Drugs and Diagnostics”. From March 2015 to December 2015, he worked as Associate Researcher in Bioinformatics on a FP7 “cooperation” project entitled (NOISEPLUS) “Mechanisms of induction of pluripotent cells: From transcriptional noise to therapies with the use of stem cells” at BRFAA. From 2010 to 2015 he also worked as Adjunct laboratory instructor (lecturer level) at the Department of Biomedical Technology Engineering, Technological Educational Institute of Athens and Lecturer at the Postgraduate Program «Advanced Systems and Methods in Biomedical Engineering», 2014 - 2016. Since January 2016 is working as Associate Researcher in Bioinformatics at Department of Haematology of University of Cambridge, also affiliated with the Wellcome Trust Sanger Institute and the Medical Research Council (MRC) Stem Cell Institute, working on single cell RNA sequencing.

Publications

  • CD4-Transgenic Zebrafish Reveal Tissue-Resident Th2- and Regulatory T Cell-like Populations and Diverse Mononuclear Phagocytes.

    Dee CT, Nagaraju RT, Athanasiadis EI, Gray C, Fernandez Del Ama L et al.

    Journal of immunology (Baltimore, Md. : 1950) 2016;197;9;3520-3530

  • SPNsim: A database of simulated solitary pulmonary nodule PET/CT images facilitating computer aided diagnosis.

    Tzanoukos G, Athanasiadis E, Gaitanis A, Georgakopoulos A, Chatziioannou A et al.

    Journal of biomedical informatics 2016;63;357-365

  • Inflamed human carotid plaques evaluated by PET/CT exhibit increased temperature: insights from an in vivo study.

    Toutouzas K, Koutagiar I, Benetos G, Aggeli C, Georgakopoulos A et al.

    European heart journal cardiovascular Imaging 2016

  • Aberrant microRNA expression in tumor mycosis fungoides.

    Papadavid E, Braoudaki M, Bourdakou M, Lykoudi A, Nikolaou V et al.

    Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016;37;11;14667-14675

  • D-Map: Random Walking on Gene Network Inference Maps Towards differential Avenue Discovery.

    Athanasiadis E, Bourdakou M and Spyrou G

    IEEE/ACM transactions on computational biology and bioinformatics 2017;14;2;484-490

  • KENeV: A web-application for the automated reconstruction and visualization of the enriched metabolic and signaling super-pathways deriving from genomic experiments.

    Pilalis E, Koutsandreas T, Valavanis I, Athanasiadis E, Spyrou G and Chatziioannou A

    Computational and structural biotechnology journal 2015;13;248-55

  • Discovering gene re-ranking efficiency and conserved gene-gene relationships derived from gene co-expression network analysis on breast cancer data.

    Bourdakou MM, Athanasiadis EI and Spyrou GM

    Scientific reports 2016;6;20518

  • ZoomOut: Analyzing Multiple Networks as Single Nodes.

    Athanasiadis EI, Bourdakou MM and Spyrou GM

    IEEE/ACM transactions on computational biology and bioinformatics 2015;12;5;1213-6

  • Bioinformatics methods in drug repurposing for Alzheimer's disease.

    Siavelis JC, Bourdakou MM, Athanasiadis EI, Spyrou GM and Nikita KS

    Briefings in bioinformatics 2016;17;2;322-35

  • GeneStoryTeller: a mobile app for quick and comprehensive information retrieval of human genes.

    Eleftheriou SV, Bourdakou MM, Athanasiadis EI and Spyrou GM

    Database : the journal of biological databases and curation 2015;2015;bav048

  • Updated field synopsis and systematic meta-analyses of genetic association studies in cutaneous melanoma: the MelGene database.

    Antonopoulou K, Stefanaki I, Lill CM, Chatzinasiou F, Kypreou KP et al.

    The Journal of investigative dermatology 2015;135;4;1074-9

  • A Web-based database of genetic association studies in cutaneous melanoma enhanced with network-driven data exploration tools.

    Athanasiadis EI, Antonopoulou K, Chatzinasiou F, Lill CM, Bourdakou MM et al.

    Database : the journal of biological databases and curation 2014;2014

  • Computer-based image analysis system designed to differentiate between low-grade and high-grade laryngeal cancer cases.

    Ninos K, Kostopoulos S, Sidiropoulos K, Kalatzis I, Glotsos D et al.

    Analytical and quantitative cytopathology and histopathology 2013;35;5;261-72

  • C-PAmP: large scale analysis and database construction containing high scoring computationally predicted antimicrobial peptides for all the available plant species.

    Niarchou A, Alexandridou A, Athanasiadis E and Spyrou G

    PloS one 2013;8;11;e79728

  • BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics.

    Paraskevopoulou MD, Vlachos IS, Athanasiadis E and Spyrou G

    Nucleic acids research 2013;41;Web Server issue;W582-6

  • Multimodality GPU-based computer-assisted diagnosis of breast cancer using ultrasound and digital mammography images.

    Sidiropoulos KP, Kostopoulos SA, Glotsos DT, Athanasiadis EI, Dimitropoulos ND et al.

    International journal of computer assisted radiology and surgery 2013;8;4;547-60

  • Pattern-recognition system, designed on GPU, for discriminating between injured normal and pathological knee cartilage.

    Kostopoulos S, Sidiropoulos K, Glotsos D, Athanasiadis E, Boutsikou K et al.

    Magnetic resonance imaging 2013;31;5;761-70

  • ChemBioServer: a web-based pipeline for filtering, clustering and visualization of chemical compounds used in drug discovery.

    Athanasiadis E, Cournia Z and Spyrou G

    Bioinformatics (Oxford, England) 2012;28;22;3002-3

  • A wavelet-based Markov random field segmentation model in segmenting microarray experiments.

    Athanasiadis E, Cavouras D, Kostopoulos S, Glotsos D, Kalatzis I and Nikiforidis G

    Computer methods and programs in biomedicine 2011;104;3;307-15

  • Segmentation of complementary DNA microarray images by wavelet-based Markov random field model.

    Athanasiadis EI, Cavouras DA, Glotsos DT, Georgiadis PV, Kalatzis IK and Nikiforidis GC

    IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society 2009;13;6;1068-74

  • Complementary DNA microarray image processing based on the fuzzy gaussian mixture model.

    Athanasiadis EI, Cavouras DA, Spyridonos PP, Glotsos DT, Kalatzis IK and Nikiforidis GC

    IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society 2009;13;4;419-25

  • Enhancing the discrimination accuracy between metastases, gliomas and meningiomas on brain MRI by volumetric textural features and ensemble pattern recognition methods.

    Georgiadis P, Cavouras D, Kalatzis I, Glotsos D, Athanasiadis E et al.

    Magnetic resonance imaging 2009;27;1;120-30

  • Improving accuracy in astrocytomas grading by integrating a robust least squares mapping driven support vector machine classifier into a two level grade classification scheme.

    Glotsos D, Kalatzis I, Spyridonos P, Kostopoulos S, Daskalakis A et al.

    Computer methods and programs in biomedicine 2008;90;3;251-61

  • Computerized analysis of digital subtraction angiography: a tool for quantitative in-vivo vascular imaging.

    Kagadis GC, Spyridonos P, Karnabatidis D, Diamantopoulos A, Athanasiadis E et al.

    Journal of digital imaging 2008;21;4;433-45