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Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Chromosome: 'Y'

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1700040F15Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
1700040F15Rik was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): RIKEN cDNA 1700040F15 gene
view this gene in MGI
Marker Type: protein coding gene
Synonyms:
Location: ChrY:60269383-60273204(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1920579 Ensembl Gene ID: ENSMUSG00000095141, ENSMUSG00000094789 Vega Gene ID:
Entrez Gene ID: 73329 CCDS ID:
Interpro Families
view original data
Data provided by Mouse Genome Informatics (MGI)

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

4932431L22Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
4932431L22Rik was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): RIKEN cDNA 4932431L22 gene
view this gene in MGI
Marker Type: unclassified gene
Synonyms:
Location: ChrY:70367444-70370583(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3588255 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 619557 CCDS ID:
view original data
Data provided by Mouse Genome Informatics (MGI)

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

Ddx3y

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Ddx3y was found for the following reasons:
chromosome - Y
marker_name - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked

Gene Details

Marker Name(s): DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 8030469F12Rik, D1Pas1-rs1, Dby
Location: ChrY:1260715-1286613(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1349406 Ensembl Gene ID: ENSMUSG00000069045 Vega Gene ID:
Entrez Gene ID: 26900 CCDS ID:
Interpro Families
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Human DDX3Y 8653
Rat Ddx3y 100312982
view original data
Data provided by Mouse Genome Informatics (MGI), Ensembl

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
EUCOMM
(Project: 45253) 		order order view details

Links

ES Cell Clones

Cassette Type 5 Knockout-First Alleles 1 Targeted Non-Conditional Alleles
Promotor Driven
Allele: genbank file | image
Targeting Vector: genbank file | image
Allele: genbank file | image
Targeting Vector: genbank file | image
ES Cell Clones With Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
EPD0688_4_A04 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Wtsi Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0688_4_C01 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Wtsi Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0688_4_H02 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Wtsi Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0688_4_H03 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Wtsi Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not confirmed LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0688_4_H04 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Wtsi Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen pass LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) fail Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA fail LOXP pass LACZ pass
Chromosome 1 pass Chromosome 8a pass Chromosome 8b -
Chromosome 11a - Chromosome 11b pass Chromosome Y pass
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
ES Cell Clones Without Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
EPD0688_4_A02 PG00156_Z_8_D12 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1e(EUCOMM)Wtsi Targeted Non-Conditional (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen no reads detected LoxP Screen no reads detected 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -

Targeting Vectors

Design Targeting Vector Intermediate Vector Cassette Backbone Targeting Vector Genbank File
196492 PG00156_Z_8_D12 PCS00156_A_H06 L1L2_Bact_P L3L4_pD223_DTA_spec view
196492 PG00156_Z_8_D12 PCS00156_A_H06 L1L2_Bact_P L3L4_pD223_DTA_spec view
view original data
Data provided by The International Knockout Mouse Consortium (IKMC)

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
2 2 0 2 view in Ensembl
view original data
Data provided by The Wellcome Trust Sanger Institute (WTSI)

Eif2s3y

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Eif2s3y was found for the following reasons:
chromosome - Y
marker_name - eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked

Gene Details

Marker Name(s): eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
view this gene in MGI
Marker Type: protein coding gene
Synonyms: Eif-2gy, Spy, Tfy
Location: ChrY:1010543-1028847(+)
Related Human Conditions (from OMIM) - no related Human Condition
view original data
Data provided by Mouse Genome Informatics (MGI), Ensembl

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
EUCOMM
(Project: 74975) 		order order view details

Links

ES Cell Clones

Cassette Type 1 Knockout-First Alleles 0 Targeted Non-Conditional Alleles
Promotor Driven
Allele: genbank file | image
Targeting Vector: genbank file | image
Targeting Vector: genbank file | image
ES Cell Clones With Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
HEPD0635_3_H04 HTGR03001_Z_3_H03 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(EUCOMM)Hmgu Knockout-First - Reporter Tagged Insertion (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen pass LoxP Screen pass 3' Screen not confirmed
Loss of WT Allele (LOA) - Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
ES Cell Clones Without Conditional Potential

No clones available.

Targeting Vectors

Design Targeting Vector Intermediate Vector Cassette Backbone Targeting Vector Genbank File
40520 HTGR03001_Z_3_H03 PCS03001_A_C06 L1L2_Bact_P L3L4_pD223_DTA_T_spec view
Vectors ES Cells
KOMP-Regeneron
 ES cell colonies screened / QC no positives Projects: VG19178
view original data
Data provided by The International Knockout Mouse Consortium (IKMC)

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
5 2 2 1 view in Ensembl
view original data
Data provided by The Wellcome Trust Sanger Institute (WTSI)

Erdr1

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Erdr1 was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): erythroid differentiation regulator 1
view this gene in MGI
Marker Type: protein coding gene
Synonyms: edr
Location: ChrY:90785442-90816465(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2384747 Ensembl Gene ID: ENSMUSG00000096768 Vega Gene ID:
Entrez Gene ID: 170942 CCDS ID:
view original data
Data provided by Mouse Genome Informatics (MGI)

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

Gm10256

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Gm10256 was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): predicted gene 10256
view this gene in MGI
Marker Type: protein coding gene
Synonyms: ENSMUSG00000069031
Location: ChrY:2862156-2873135(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3710530 Ensembl Gene ID: ENSMUSG00000095852 Vega Gene ID:
Entrez Gene ID: 100042874 CCDS ID:
Interpro Families
view original data
Data provided by Mouse Genome Informatics (MGI), Ensembl

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

Gm10352

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Gm10352 was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): predicted gene 10352
view this gene in MGI
Marker Type: protein coding gene
Synonyms: ENSMUSG00000071960
Location: ChrY:2904133-2912188(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3708825 Ensembl Gene ID: ENSMUSG00000091987 Vega Gene ID:
Entrez Gene ID: 100042881 CCDS ID:
view original data
Data provided by Mouse Genome Informatics (MGI), Ensembl

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

Gm16501

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Gm16501 was found for the following reasons:
synonym - H2al2y
chromosome - Y
interpro_desc - Transcription factor CBF/NF-Y/archaeal histone
interpro - IPR003958||CBFA_NFYB_domain||Transcription factor CBF/NF-Y/archaeal histone

Gene Details

Marker Name(s): predicted gene 16501
view this gene in MGI
Marker Type: protein coding gene
Synonyms: ENSMUSG00000069034, H2al2y
Location: ChrY:2720339-2720674(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:3710623 Ensembl Gene ID: ENSMUSG00000095573 Vega Gene ID:
Entrez Gene ID: 100042840 CCDS ID:
Interpro Families
view original data
Data provided by Mouse Genome Informatics (MGI), Ensembl

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

Gm17790

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Gm17790 was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): predicted gene, 17790
view this gene in MGI
Marker Type: pseudogene
Synonyms:
Location: ChrY:1736195-1745173(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:5009972 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 100126096 CCDS ID:
view original data
Data provided by Mouse Genome Informatics (MGI)

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

Gm18177

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
Gm18177 was found for the following reasons:
chromosome - Y

Gene Details

Marker Name(s): predicted gene, 18177
view this gene in MGI
Marker Type: pseudogene
Synonyms:
Location: ChrY:3875047-3875737(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:5010362 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 100416666 CCDS ID:
view original data
Data provided by Mouse Genome Informatics (MGI)

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available