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Mammalian Phenotype
Chromosome
Marker Symbol

Browsing Data by Chromosome: 'X'

5430428K19Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
5430428K19Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 5430428K19 gene
view this gene in MGI
Marker Type: unclassified non-coding RNA gene
Synonyms:
Location: ChrX:6452376-6574663(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1918672 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 71422 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources no data available

5530601H04Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
5530601H04Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 5530601H04 gene
view this gene in MGI
Marker Type: unclassified non-coding RNA gene
Synonyms: AI835882
Location: ChrX:105037197-105079609(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1918695 Ensembl Gene ID: ENSMUSG00000087174 Vega Gene ID: OTTMUSG00000018116
Entrez Gene ID: 100503212, 71445 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

5730405O15Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
5730405O15Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 5730405O15 gene
view this gene in MGI
Marker Type: unclassified non-coding RNA gene
Synonyms:
Location: ChrX:13042015-13045297(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1917739 Ensembl Gene ID: ENSMUSG00000087424 Vega Gene ID: OTTMUSG00000017537
Entrez Gene ID: 70489 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

5730412P04Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
5730412P04Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 5730412P04 gene
view this gene in MGI
Marker Type: unclassified non-coding RNA gene
Synonyms:
Location: ChrX:136104603-136115420(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1917741 Ensembl Gene ID: ENSMUSG00000087553 Vega Gene ID: OTTMUSG00000018778
Entrez Gene ID: 70491 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

5730416F02Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
5730416F02Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 5730416F02 gene
view this gene in MGI
Marker Type: pseudogene
Synonyms:
Location: ChrX:109001485-109002296(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1917800 Ensembl Gene ID: ENSMUSG00000081793 Vega Gene ID: OTTMUSG00000018341
Entrez Gene ID: 70550 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

6030498E09Rik

6030498E09Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 6030498E09 gene
view this gene in MGI
Marker Type: protein coding gene
Synonyms:
Location: ChrX:38772671-38962686(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1925133 Ensembl Gene ID: ENSMUSG00000051361 Vega Gene ID: OTTMUSG00000017240
Entrez Gene ID: 77883 CCDS ID:
Orthologs / Homologs
Species Marker Symbol Entrez Gene ID Ensembl Gene ID
Rat LOC691215 691215

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
KOMP-CSD
(Project: 33395)
order order view details

ES Cell Clones

Cassette Type 3 Knockout-First Alleles 2 Targeted Non-Conditional Alleles
Promotor Driven
Allele: genbank file | image
Targeting Vector: genbank file | image
Allele: genbank file | image
Targeting Vector: genbank file | image
ES Cell Clones With Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
DEPD00537_4_C10 PG00061_Y_4_G07 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(KOMP)Mbp Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not attempted LoxP Screen pass 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
DEPD00537_4_F10 PG00061_Y_4_G07 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1a(KOMP)Mbp Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not attempted LoxP Screen pass 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype 0.8 - 0.71 Copy Number pass Cells Thawed Correctly -
5' LR-PCR pass 5' SR-PCR - 3' SR-PCR pass
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
EPD0122_4_E02 PRPGS00061_B_G07 C57BL/6N JM8.N4 tm1a(KOMP)Wtsi Knockout First, Reporter-tagged insertion with conditional potential (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not attempted LoxP Screen pass 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity fail
Distribution Centre
Karyotype - Copy Number fail Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
ES Cell Clones Without Conditional Potential
ES Cell Clone Targeting Vector ES Cell Strain ES Cell Line Allele Allele Type QC/Screening Data
DEPD00537_4_C09 PG00061_Y_4_G07 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1e(KOMP)Mbp Targeted Non-Conditional (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not attempted LoxP Screen - 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -
DEPD00537_4_C11 PG00061_Y_4_G07 C57BL/6N-Atm1Brd/a JM8A3.N1 tm1e(KOMP)Mbp Targeted Non-Conditional (Promotor Driven Cassette) view data    ( about )
Production Centre
5' Screen not attempted LoxP Screen - 3' Screen no reads detected
Loss of WT Allele (LOA) pass Vector Integrity -
Distribution Centre
Karyotype - Copy Number - Cells Thawed Correctly -
5' LR-PCR - 5' SR-PCR - 3' SR-PCR -
LOA - LOXP - LACZ -
Chromosome 1 - Chromosome 8a - Chromosome 8b -
Chromosome 11a - Chromosome 11b - Chromosome Y -
User/Mouse Clinic
Southern Blot - Map Test - Karyotype -
TV Backbone Assay - 5' LR-PCR - Loss of WT Allele (LOA) -
Neo Count (qPCR) - LacZ SR-PCR - 5' Cassette Integrity -
Neo SR-PCR - Mutant Specific SR-PCR - LoxP Confirmation -
3' LR-PCR -

Targeting Vectors

Design Targeting Vector Intermediate Vector Cassette Backbone Targeting Vector Genbank File
46760 PRPGS00061_B_G07 PCS00061_A_G07 L1L2_Bact_P L3L4_pD223_DTA_spec view
46760 PG00061_Y_4_G07 PCS00061_A_G07 L1L2_Bact_P L3L4_pD223_DTA_spec view
46760 PG00061_Y_4_G07 PCS00061_A_G07 L1L2_Bact_P L3L4_pD223_DTA_spec view

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
39 4 1 3 view in Ensembl

6330419J24Rik

6330419J24Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 6330419J24 gene
view this gene in MGI
Marker Type: protein coding gene
Synonyms: 6330419J24Rik, Ncrna00086
Location: ChrX:56374610-56377799(+)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2443645 Ensembl Gene ID: ENSMUSG00000054850 Vega Gene ID: OTTMUSG00000017519
Entrez Gene ID: 320237 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells

Vectors ES Cells
EUCOMM
VEGA Annotation Requested Projects: 98695
Vectors ES Cells
NorCOMM
Design Requested Projects: 24353

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
19 1 0 0 view in Ensembl

6530403M18Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
6530403M18Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): RIKEN cDNA 6530403M18 gene
view this gene in MGI
Marker Type: unclassified gene
Synonyms:
Location: ChrX:56381198-56382576
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:1923462 Ensembl Gene ID: Vega Gene ID:
Entrez Gene ID: 76212 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources no data available

6720401G13Rik

6720401G13Rik was found for the following reasons:
chromosome - X

Gene Details

Marker Name(s): functional intergenic repeating RNA element
view this gene in MGI
Marker Type: unclassified non-coding RNA gene
Synonyms: 5830467J12Rik, AW048145
Location: ChrX:50555744-50635321(-)
Related Human Conditions (from OMIM) - no related Human Condition
More Information
MGI Gene Accession: MGI:2147989 Ensembl Gene ID: ENSMUSG00000085396 Vega Gene ID: OTTMUSG00000017476
Entrez Gene ID: 103012 CCDS ID:

WTSI Phenotyping no data available

Mice no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
20 1 3 0 view in Ensembl

8030474K03Rik

Datasets: Gene Details WTSI Phenotyping Mice IKMC Vectors and ES Cells DNA Clone Resources
8030474K03Rik was found for the following reasons:
chromosome - X

Gene Details no data available

WTSI Phenotyping no data available

Mice no data available

IKMC Vectors and ES Cells no data available

DNA Clone Resources

C57Bl/6J Bacs 129 Bacs MICER clones KO Targeting Vectors
21 2 0 0 view in Ensembl