Mutation Data Page

• Welcome to the mutation data page. This page contains a table of detailed information about each mutation in the selected row of the details table found on the main display page.

Counts on top of each page :

counts on selection of positive data with/without filters :

• Mutated Samples: Counts unique mutated samples based on sample name and current row's tissue type and filters selected.
   
  
• Observed Sequence Changes: counts all mutations for selected gene and with the current row's tissue type and filters selected. It counts a mutation in same sample as a separate count if it has different mutation, sample name, phenotype, zygosity, study, sample source or somatic status.
   
  
• Entries: Counts the number of rows displayed.
   
  
• Distinct samples : Counts the number of distinct samples displayed on the basis of sample name and current row's tissue type and filters selected.
   
  

Table Data

The table is arranged to contain a separate mutation on each row, with the various data points separated into columns.

• Sample Name: The name of the sample that the mutation was found in.
   
  
• Sample Id: The id of the sample that the mutation was found in.
   
  
• AA Mutation: The change that has occurred in the peptide sequence as a result of the mutation.
   
  
• CDS Mutation:The change that has occurred in the nucleotide sequence as a result of the mutation .
   
  
• Primary Tissue: The primary tissue from which the sample originated.
   
  
• Tissue Subtype 1: Further sub classifications of the samples tissue of origin.
   
  
• Tissue Subtype 2: Further sub classifications of the samples tissue of origin.
   
  
• Histology: The histological classification of the sample
   
  
• Histology Subtype 1: Further histological classifications of the sample
   
  
• Histology Subtype 2: Further histological classifications of the sample
   
  
• Pubmed Id: The ID for the paper that the sample was noted in.
   
  
• CGP Study: The CGP ID for the study that the sample was noted in.
   
  
• Somatic Status: Information on whether the sample was reported to be Confirmed Somatic, Previously Reported or Variant of unknown origin.
   
  
• Sample Source: The Source of the sample Tumour sample, Cultured sample or NS.
   
  
• Zygosity: Information on whether the mutation was reported to be homozygous or heterozygous within the sample.
   
  
• Genomic Co-ordinates: The cooridnates where the mutation has occured.
   
  

Export

By clicking on the export button you will be able to save the data in a variety of formats, including Excel.

Any More Questions?

• If you can not find the help you need in these pages please contact cosmic@sanger.ac.uk