Cosmic Help

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Mutation Data Page

  • Welcome to the mutation data page. This page contains a table of detailed information about each mutation in the selected row of the details table found on the main display page.
Counts on top of each page :

counts on selection of positive data with/without filters :

  • Mutated Samples: Counts unique mutated samples based on sample name and current row's tissue type and filters selected.
     
  • Observed Sequence Changes: counts all mutations for selected gene and with the current row's tissue type and filters selected. It counts a mutation in same sample as a separate count if it has different mutation, sample name, phenotype, zygosity, study, sample source or somatic status.
     
  • Entries: Counts the number of rows displayed.
     
  • Distinct samples : Counts the number of distinct samples displayed on the basis of sample name and current row's tissue type and filters selected.
     


Table Data

The table is arranged to contain a separate mutation on each row, with the various data points separated into columns.

  • Sample Name: The name of the sample that the mutation was found in.
     
  • Sample Id: The id of the sample that the mutation was found in.
     
  • AA Mutation: The change that has occurred in the peptide sequence as a result of the mutation.
     
  • CDS Mutation:The change that has occurred in the nucleotide sequence as a result of the mutation .
     
  • Primary Tissue: The primary tissue from which the sample originated.
     
  • Tissue Subtype 1: Further sub classifications of the samples tissue of origin.
     
  • Tissue Subtype 2: Further sub classifications of the samples tissue of origin.
     
  • Histology: The histological classification of the sample
     
  • Histology Subtype 1: Further histological classifications of the sample
     
  • Histology Subtype 2: Further histological classifications of the sample
     
  • Pubmed Id: The ID for the paper that the sample was noted in.
     
  • CGP Study: The CGP ID for the study that the sample was noted in.
     
  • Somatic Status: Information on whether the sample was reported to be Confirmed Somatic, Previously Reported or Variant of unknown origin.
     
  • Sample Source: The Source of the sample Tumour sample, Cultured sample or NS.
     
  • Zygosity: Information on whether the mutation was reported to be homozygous or heterozygous within the sample.
     
  • Genomic Co-ordinates: The cooridnates where the mutation has occured.
     
Export

By clicking on the export button you will be able to save the data in a variety of formats, including Excel.

Any More Questions?