uk.ac.sanger.cgp.standalonecsa.services
Class FlaggingServiceImpl

java.lang.Object
  uk.ac.sanger.cgp.standalonecsa.services.FlaggingServiceImpl

All Implemented Interfaces:

FlaggingService

public class FlaggingServiceImpl
extends java.lang.Object
implements FlaggingService

This class handles all things flagging related.

Author:

Original: kr2, $Author: kr2 $

Field Summary

protected static org.apache.commons.logging.Log

log

Constructor Summary

FlaggingServiceImpl()

Method Summary

void	flagTraceGroup(TraceGroupBean traceGroup) Performs variant flagging.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.apache.commons.logging.Log log

Constructor Detail

FlaggingServiceImpl

public FlaggingServiceImpl()

Method Detail

flagTraceGroup

public void flagTraceGroup(TraceGroupBean traceGroup)

Description copied from interface: FlaggingService

Performs variant flagging. This method does many complex things but the only real change to the input object is that if a variant is flagged as good the Mutation.setFlaggedGood() (autocsa.beans) should be set to true.

Specified by:

flagTraceGroup in interface FlaggingService

Parameters:

traceGroup - the TraceGroupBean to be flagged