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| Packages that use JabawatResults | |
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| uk.ac.sanger.cgp.standalonecsa.jabawat | The core of the alignment system used in Standalone AutoCSA. |
| Uses of JabawatResults in uk.ac.sanger.cgp.standalonecsa.jabawat |
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| Methods in uk.ac.sanger.cgp.standalonecsa.jabawat that return JabawatResults | |
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static JabawatResults |
Jabawat.runJabawat(java.lang.String target,
java.lang.String query,
JabawatResults jr,
int mismatches)
Runs the core of the JaBaWAT alignment program using two strings representing the sequences. |
| Methods in uk.ac.sanger.cgp.standalonecsa.jabawat with parameters of type JabawatResults | |
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static JabawatResults |
Jabawat.runJabawat(java.lang.String target,
java.lang.String query,
JabawatResults jr,
int mismatches)
Runs the core of the JaBaWAT alignment program using two strings representing the sequences. |
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