uk.ac.sanger.cgp.standalonecsa.exceptions
Class CsaRuntimeAlignmentException

java.lang.Object
  extended by java.lang.Throwable
      extended by java.lang.Exception
          extended by java.lang.RuntimeException
              extended by uk.ac.sanger.cgp.standalonecsa.exceptions.CsaRuntimeAlignmentException
All Implemented Interfaces:
java.io.Serializable

public class CsaRuntimeAlignmentException
extends java.lang.RuntimeException

Used to throw exceptions arising from alignment problems.

Author:
Original: kr2, $Author: kr2 $
See Also:
Serialized Form

Constructor Summary
CsaRuntimeAlignmentException()
          Creates a new instance of CsaRuntimeAlignmentException without detail message.
CsaRuntimeAlignmentException(java.lang.String msg)
          Constructs an instance of CsaRuntimeAlignmentException with specified detail message.
CsaRuntimeAlignmentException(java.lang.String msg, java.lang.Throwable t)
          Constructs an instance of CsaRuntimeAlignmentException with specified detail message and specified causing exception.
CsaRuntimeAlignmentException(java.lang.Throwable t)
          Constructs an instance of CsaRuntimeAlignmentException with specified causing exception.
 
Method Summary
 
Methods inherited from class java.lang.Throwable
fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

CsaRuntimeAlignmentException

public CsaRuntimeAlignmentException()
Creates a new instance of CsaRuntimeAlignmentException without detail message.


CsaRuntimeAlignmentException

public CsaRuntimeAlignmentException(java.lang.String msg)
Constructs an instance of CsaRuntimeAlignmentException with specified detail message.

Parameters:
msg - the detail message.

CsaRuntimeAlignmentException

public CsaRuntimeAlignmentException(java.lang.Throwable t)
Constructs an instance of CsaRuntimeAlignmentException with specified causing exception.

Parameters:
t - The Throwable object which was the root cause of this exception

CsaRuntimeAlignmentException

public CsaRuntimeAlignmentException(java.lang.String msg,
                                    java.lang.Throwable t)
Constructs an instance of CsaRuntimeAlignmentException with specified detail message and specified causing exception.

Parameters:
msg - the detail message.
t - The Throwable object which was the root cause of this exception