Uses of Package
uk.ac.sanger.cgp.standalonecsa.beans

Packages that use uk.ac.sanger.cgp.standalonecsa.beans

uk.ac.sanger.cgp.standalonecsa.beans	The beans used by Standalone AutoCSA.
uk.ac.sanger.cgp.standalonecsa.interfaces	The service interface classes used in Standalone AutoCSA.
uk.ac.sanger.cgp.standalonecsa.services	The implementations of the services used in Standalone AutoCSA.
uk.ac.sanger.cgp.standalonecsa.util	The utility classes used in Standalone AutoCSA.

Classes in uk.ac.sanger.cgp.standalonecsa.beans used by uk.ac.sanger.cgp.standalonecsa.beans

AmplimerBean
This object handles information pertaining to the amplimer and any associated mappings.

CdsBean
A CdsBean holds information regarding the name, dna sequence, protein sequence and coding orientation of the CDS.

ExperimentBean
Holds all information regarding an experiment (sequencing trace).

Classes in uk.ac.sanger.cgp.standalonecsa.beans used by uk.ac.sanger.cgp.standalonecsa.interfaces

AmplimerBean
This object handles information pertaining to the amplimer and any associated mappings.

CdsBean
A CdsBean holds information regarding the name, dna sequence, protein sequence and coding orientation of the CDS.

ExperimentBean
Holds all information regarding an experiment (sequencing trace).

TraceGroupBean
This object is used to group the variant and wildtype experiments by amplimer.

Classes in uk.ac.sanger.cgp.standalonecsa.beans used by uk.ac.sanger.cgp.standalonecsa.services

AmplimerBean
This object handles information pertaining to the amplimer and any associated mappings.

CdsBean
A CdsBean holds information regarding the name, dna sequence, protein sequence and coding orientation of the CDS.

ExperimentBean
Holds all information regarding an experiment (sequencing trace).

TraceGroupBean
This object is used to group the variant and wildtype experiments by amplimer.

Classes in uk.ac.sanger.cgp.standalonecsa.beans used by uk.ac.sanger.cgp.standalonecsa.util

ExperimentBean
Holds all information regarding an experiment (sequencing trace).

FileProcessingInfoBean
Object to hold all information related to file name construction and processing loaded from standaloneCsa.properties.