Package uk.ac.sanger.cgp.standalonecsa.beans

The beans used by Standalone AutoCSA.

See:
          Description

Class Summary
AmplimerBean This object handles information pertaining to the amplimer and any associated mappings.
CdsBean A CdsBean holds information regarding the name, dna sequence, protein sequence and coding orientation of the CDS.
Constants  
Constants.PreFlagging Constants used to indicate pre flagging status.
Constants.TraceStatus Constants used to indicate trace status.
Constants.VariantType Constants used to indicate variant type.
Constants.Zygosity Constants used to indicate zygosity
ExperimentBean Holds all information regarding an experiment (sequencing trace).
FileProcessingInfoBean Object to hold all information related to file name construction and processing loaded from standaloneCsa.properties.
TraceGroupBean This object is used to group the variant and wildtype experiments by amplimer.
VariantGroup Grouping of variants for different displays.
 

Package uk.ac.sanger.cgp.standalonecsa.beans Description

The beans used by Standalone AutoCSA.