Package uk.ac.sanger.cgp.standalonecsa.beans

The beans used by Standalone AutoCSA.

See:
Description

Class Summary

AmplimerBean	This object handles information pertaining to the amplimer and any associated mappings.
CdsBean	A CdsBean holds information regarding the name, dna sequence, protein sequence and coding orientation of the CDS.
Constants
Constants.PreFlagging	Constants used to indicate pre flagging status.
Constants.TraceStatus	Constants used to indicate trace status.
Constants.VariantType	Constants used to indicate variant type.
Constants.Zygosity	Constants used to indicate zygosity
ExperimentBean	Holds all information regarding an experiment (sequencing trace).
FileProcessingInfoBean	Object to hold all information related to file name construction and processing loaded from standaloneCsa.properties.
TraceGroupBean	This object is used to group the variant and wildtype experiments by amplimer.
VariantGroup	Grouping of variants for different displays.

Package uk.ac.sanger.cgp.standalonecsa.beans Description

The beans used by Standalone AutoCSA.