Cell Line Identity Typing
Comparison of the NCI60 cell line set
Pair-wise comparisons of the genotype calls from the Affymetrix 10Kmapping arrays for the NCI60 cell line set were carried out to identifythose lines with a common ancestor. Comparisons were carried out bothwithin the NCI60 set and to those cell lines previously screened on the array. All comparisons which have an identity greater than 70% are included in the table shown below. Within the 59 lines that make up the NCI60 set there are three pairs of lines with high identity to each other (NCI-ADR-RES/OVCAR-8, M14/MDA-MB-435 & SNB19/U251) one line (HCT-15) sourced from the NCI is different from a line of the same name from our general set of cell lines. Other cell lines with a common ancestor |
| Identity | Line 1 | Line 2 |
99.1 | 786-0-NCI | 786-0 |
97.1 | A549-NCI | A549 |
97.3 | A549-NCI | A549SF |
96.2 | ACHN-NCI | ACHN |
98.8 | CCRF-CEM-NCI | CEMC1 |
98.6 | CCRF-CEM-NCI | CEMC2 |
98.2 | CCRF-CEM-NCI | 1301 |
95.3 | COLO-205-NCI | COLO-205 |
94.0 | COLO-205-NCI | COLO-201 |
92.5 | COLO-205-NCI | COLO-206F |
97.2 | DU-145-NCI | DU-145 |
98.9 | HCT-116-NCI | HCT-116 |
97.6 | HCT-15-NCI | HRT-18 |
97.4 | HCT-15-NCI | DLD-1 |
97.3 | HCT-15-NCI | LUDLU-1 |
96.6 | HCT-15-NCI | HCT-8 |
97.3 | HL-60-NCI | P39-TSU |
96.5 | HL-60-NCI | HL-60MX2 |
97.8 | HOP-62-NCI | HOP-62 |
97.4 | HOP-92-NCI | HOP-92 |
94.6 | HT-29-NCI | HT-29 |
96.7 | HT-29-NCI | WIDR |
94.3 | HT-29-NCI | PANC1 |
92.4 | HT-29-NCI | CX-1 |
87.3 | HT-29-NCI | MAwi |
98.6 | IGROV-1-NCI | IGROV1 |
98.6 | IGROV-1-NCI | OVI-P |
97.5 | K-562-NCI | K-562 |
97.2 | KM12-NCI | KM12LV5 |
96.9 | M14-NCI | MDA-MB-435-NCI |
97.7 | Malme-3M-NCI | Malme-3M |
97.7 | MCF7-NCI | MCF7 |
96.6 | MCF7-NCI | KPL-1 |
81.1 | MDA-MB-231-NCI | MDA-MB-231 |
93.5 | MDA-MB-231-NCI | BE |
93.3 | MDA-MB-231-NCI | MDA-MB-468 |
96.9 | MDA-MB-435-NCI | M14-NCI |
99.0 | MOLT-4-NCI | NH17 |
99.3 | NCI-ADR-RES-NCI | NCI-ADR-RES |
99.0 | NCI-ADR-RES-NCI | OVCAR-8-NCI |
97.9 | NCI-ADR-RES-NCI | OVCAR8 |
97.8 | NCI-H23-NCI | NCI-H23 |
97.7 | NCI-H322M-NCI | NCI-H322M |
97.6 | NCI-H322M-NCI | NCI-H322 |
99.0 | NCI-H460-NCI | NCI-H460 |
96.3 | NCI-H522-NCI | NCI-H522 |
96.1 | OVCAR-3-NCI | OVCAR3 |
99.1 | OVCAR-4-NCI | OVCAR4 |
99.1 | OVCAR-8-NCI | OVCAR8 |
98.5 | OVCAR-8-NCI | NCI-ADR-RES |
99.0 | OVCAR-8-NCI | NCI-ADR-RES-NCI |
98.1 | PC-3-NCI | PC3M |
97.3 | RPMI-8226-NCI | COLO-677 |
95.9 | RPMI-8226-NCI | COLO-775 |
97.2 | SF268-NCI | SF268 |
98.0 | SK-MEL-28-NCI | SK-MEL-28 |
96.5 | SK-MEL-2-NCI | SK-MEL-2 |
96.7 | SK-MEL-2-NCI | SK-MEL-31 |
96.1 | SK-MEL-5-NCI | SK-MEL-5 |
97.2 | SK-OV-3-NCI | SK-OV-3 |
97.0 | SK-OV-3-NCI | Ska-3-68 |
95.5 | SN12C-NCI | SN12C |
98.9 | SNB19-NCI | U-251-MG |
98.6 | SNB19-NCI | U-373-MG |
96.0 | SNB19-NCI | U251-NCI |
95.9 | SNB19-NCI | KNS-89 |
95.2 | SNB19-NCI | TK-1 |
94.9 | SNB19-NCI | B2-17 |
98.8 | SNB75-NCI | SNB-75 |
97.2 | SR-NCI | SR |
93.6 | SR-NCI | SR-786 |
98.0 | SW620-NCI | SW620 |
93.5 | SW620-NCI | SW527 |
87.2 | SW620-NCI | SW480 |
81.3 | SW620-NCI | MDAH2774 |
98.3 | T47D-NCI | T47D |
70.2 | T47D-NCI | NCI-H1770 |
96.8 | U251-NCI | KNS-89 |
96.7 | U251-NCI | U-251-MG |
96.6 | U251-NCI | TK-1 |
94.8 | U251-NCI | U-373-MG |
91.0 | U251-NCI | B2-17 |
96.0 | U251-NCI | SNB19-NCI |
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