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Retrieve BLAST result
FTP Access to Sequence Data

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Dataset Type FTP address
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Chromosomal skims Shotgun reads /pub/databases/T.brucei_sequences/SHOTGUN/
Chromosomal skims Contig sequences /pub/databases/T.brucei_sequences/CONTIGS/
GSS sequences Single reads /pub/databases/T.brucei_sequences/GSS/
GSS/EST clusters Single reads /pub/databases/T.brucei_sequences/GSS_clusters

The FTP site contains datasets for the main subsets of data:

  • BACs (sequences of the BACs sequenced at by the Sanger Institute, these inlcude the three bloodstream expression sites)
  • Contig sequences (contig sequences and of chromosomes I, IX and X), further divided into:
    • DNA sequence
    • predicted peptides
  • GSS sequences
  • P1s (sequences of the P1's mapped onto chromosome I)

The data in these directories includes both finished sequences already submitted to nucleotide sequence databases as well as preliminary unfinished sequences. Release of data is made as and when appropriate.

Please note:
  • Within each ftp directory, there will usually be several files. These are generated periodically, so make sure that you obtain the latest version. The file name contains the date:
    tryp1_reads_000203.gz
    is a gzip compressed file, made 00-02-03 (3rd Feb 2000) of chromosome 1 sequence reads for example.
  • As the number of sequence reads increases, fewer, but larger, contigs will be assembled. Sequence contig numbers will not stay the same between successive assemblies
  • It is easiest to use your Netscape browser to access these data. You can download data by clicking on the relevant file whilst holding down the Shift-key or follow the relevant link, allow the browser to complete loading the file and then save (Alt-S in Netscape).

Please note:

IMPORTANT: This sequence is unfinished and does not necessarily represent the correct sequence. Work on the sequence is in progress and the release of these data is based on the understanding that the sequence may change as work continues. The sequence may be still be contaminated with foreign sequence (e.g. other chromosomes, E.coli, yeast, vector, phage etc.).

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Last Modified Tue Oct 21 16:37:36 2003

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