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Retrieve BLAST result
Streptomyces scabies

The Sanger Institute has been funded by the USDA to sequence the genome of Streptomyces scabies strain 87.22 in collaboration with Rosemary Loria of the Department of Plant Pathology, Cornell University.

Streptomyces scabies is an important bacterial plant pathogen, and is the causative agent of potato scab.

The genome was estimated to be around 8.1 Mb in length with a G+C content of approximately 72%.

The genome is now finished, and the sequence is available for searching on our Blast Server, or for download from our FTP site.

The chromosome is 10,148,695 bp with a G+C content of 71.45%. A preliminary gene prediction, with systematic gene identifiers, is available from our FTP site.

The shotgun sequences are still available. There are 158,304 reads, totalling 89.897 Mb, giving a theoretical coverage of 99.99 % of the genome.

Statement on annotation

Annotation of the sequence is ongoing, and the full annotation will be released upon publication. Please note that, although the sequence is finished, and we believe it to be accurate, it is possible that errors and missassemblies may remain. The sequence should be considered as preliminary until final publication. We would ask users of the data to read our Data release policy and Guidelines on use of data in publications


Assembly warning

Please note that the assembly database consists of unedited automatic assemblies; it will contain errors and misassemblies, along with E. coli and vector contamination. The contig numbers are not stable, and will vary with each data release. The sequences in the shotgun database are single reads from ABI sequencers; they will contain errors, along with both E. coli and vector contamination.


Data Release Statement

This sequencing centre plans on publishing the completed and annotated sequences in a peer-reviewed journal as soon as possible. Permission of the principal investigator should be obtained before publishing analyses of the sequence/open reading frames/genes on a chromosome or genome scale.


Sequencing enquiries

Please address all sequencing enquiries to: parkhill@sanger.ac.uk

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Last Modified Wed Oct 14 13:14:39 2009

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