FH Key Location/Qualifiers FH FT CDS 202..1557 FT /M1_GAS_orthologue="SPy0002" FT /MGAS10270_orthologue="MGAS10270_Spy0001" FT /MGAS10394_orthologue="M6_Spy0001" FT /MGAS10750_orthologue="MGAS10750_Spy0001" FT /MGAS2096_orthologue="MGAS2096_Spy0001" FT /MGAS315_orthologue="dnaA" FT /MGAS5005_orthologue="M5005_Spy0001" FT /MGAS6180_orthologue="M28_Spy0001" FT /MGAS8232_orthologue="dnaA" FT /MGAS9429_orthologue="MGAS9429_Spy0001" FT /SSI_1_orthologue="SPs0001" FT /class="1.2.1" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00001.out" FT /gene="dnaA" FT /gene="dnaH" FT /product="chromosomal replication initiator protein" FT /systematic_id="SpyM50001" FT misc_feature 535..1488 FT /colour=9 FT /domain="HMMPfam:PF00308;Bacterial dnaA FT protein;1.7e-156;codon 112-429" FT /id="SpyM50001" FT /label=HMMPfam FT /note="HMMPfam hit to PF00308, Bacterial dnaA protein, FT score 1.7e-156" FT misc_feature 655..678 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 1429..1488 FT /colour=8 FT /note="PS01008 DnaA protein signature." FT CDS 1712..2848 FT /EC_number="2.7.7.7" FT /M1_GAS_orthologue="SPy0003" FT /MGAS10270_orthologue="MGAS10270_Spy0002" FT /MGAS10394_orthologue="M6_Spy0002" FT /MGAS10750_orthologue="MGAS10750_Spy0002" FT /MGAS2096_orthologue="MGAS2096_Spy0002" FT /MGAS315_orthologue="dnaN" FT /MGAS5005_orthologue="M5005_Spy0002" FT /MGAS6180_orthologue="M28_Spy0002" FT /MGAS8232_orthologue="dnaN" FT /MGAS9429_orthologue="MGAS9429_Spy0002" FT /SSI_1_orthologue="SPs0002" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00002.out" FT /gene="dnaN" FT /product="DNA polymerase III, beta chain" FT /systematic_id="SpyM50002" FT misc_feature 1715..2092 FT /colour=9 FT /domain="HMMPfam:PF00712;DNA polymerase III beta subunit, FT N-te;2.1e-26;codon 2-127" FT /id="SpyM50002" FT /label=HMMPfam FT /note="HMMPfam hit to PF00712, DNA polymerase III beta FT subunit, N-te, score 2.1e-26" FT misc_feature 2117..2464 FT /colour=9 FT /domain="HMMPfam:PF02767;DNA polymerase III beta subunit, FT cent;1.9e-34;codon 136-251" FT /id="SpyM50002" FT /label=HMMPfam FT /note="HMMPfam hit to PF02767, DNA polymerase III beta FT subunit, cent, score 1.9e-34" FT misc_feature 2468..2839 FT /colour=9 FT /domain="HMMPfam:PF02768;DNA polymerase III beta subunit, FT C-te;3.2e-29;codon 253-376" FT /id="SpyM50002" FT /label=HMMPfam FT /note="HMMPfam hit to PF02768, DNA polymerase III beta FT subunit, C-te, score 3.2e-29" FT CDS 2923..3120 FT /M1_GAS_orthologue="SPy0004" FT /MGAS10270_orthologue="MGAS10270_Spy0003" FT /MGAS10394_orthologue="M6_Spy0003" FT /MGAS10750_orthologue="MGAS10750_Spy0003" FT /MGAS2096_orthologue="MGAS2096_Spy0003" FT /MGAS315_orthologue="SpyM3_0003" FT /MGAS5005_orthologue="M5005_Spy0003" FT /MGAS6180_orthologue="M28_Spy0003" FT /MGAS9429_orthologue="MGAS9429_Spy0003" FT /SSI_1_orthologue="SPs0003" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00003.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50003" FT misc_feature 2923..3114 FT /colour=9 FT /domain="HMMPfam:PF06107;Bacterial protein of unknown FT function (DUF95;1.4e-47;codon 1-64" FT /id="SpyM50003" FT /label=HMMPfam FT /note="HMMPfam hit to PF06107, Bacterial protein of FT unknown function (DUF95, score 1.4e-47" FT CDS 3450..4565 FT /M1_GAS_orthologue="SPy0006" FT /MGAS10270_orthologue="MGAS10270_Spy0004" FT /MGAS10394_orthologue="M6_Spy0004" FT /MGAS10750_orthologue="MGAS10750_Spy0004" FT /MGAS2096_orthologue="MGAS2096_Spy0004" FT /MGAS315_orthologue="SpyM3_0004" FT /MGAS5005_orthologue="M5005_Spy0004" FT /MGAS6180_orthologue="M28_Spy0004" FT /MGAS8232_orthologue="spyM18_0004" FT /MGAS9429_orthologue="MGAS9429_Spy0004" FT /SSI_1_orthologue="SPs0004" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00004.out" FT /product="putative GTP-binding protein" FT /systematic_id="SpyM50004" FT misc_feature 3456..3905 FT /colour=9 FT /domain="HMMPfam:PF01926;GTPase of unknown FT function;1.4e-34;codon 3-152" FT /id="SpyM50004" FT /label=HMMPfam FT /note="HMMPfam hit to PF01926, GTPase of unknown function, FT score 1.4e-34" FT misc_feature 3474..3497 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 4308..4559 FT /colour=9 FT /domain="HMMPfam:PF06071;Protein of unknown function FT (DUF933);5.3e-60;codon 287-370" FT /id="SpyM50004" FT /label=HMMPfam FT /note="HMMPfam hit to PF06071, Protein of unknown function FT (DUF933), score 5.3e-60" FT CDS 4635..5204 FT /EC_number="3.1.1.29" FT /M1_GAS_orthologue="SPy0007" FT /MGAS10270_orthologue="MGAS10270_Spy0005" FT /MGAS10394_orthologue="M6_Spy0005" FT /MGAS10750_orthologue="MGAS10750_Spy0005" FT /MGAS2096_orthologue="MGAS2096_Spy0005" FT /MGAS315_orthologue="pth" FT /MGAS5005_orthologue="M5005_Spy0005" FT /MGAS6180_orthologue="M28_Spy0005" FT /MGAS8232_orthologue="pth" FT /MGAS9429_orthologue="MGAS9429_Spy0005" FT /SSI_1_orthologue="SPs0005" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00005.out" FT /gene="pth" FT /product="peptidyl-tRNA hydrolase" FT /systematic_id="SpyM50005" FT misc_feature 4644..5198 FT /colour=9 FT /domain="HMMPfam:PF01195;Peptidyl-tRNA FT hydrolase;4.6e-76;codon 4-188" FT /id="SpyM50005" FT /label=HMMPfam FT /note="HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase, FT score 4.6e-76" FT misc_feature 4959..4991 FT /colour=8 FT /note="PS01196 Peptidyl-tRNA hydrolase signature 2." FT CDS 5207..8710 FT /M1_GAS_orthologue="SPy0008" FT /MGAS10270_orthologue="MGAS10270_Spy0006" FT /MGAS10394_orthologue="M6_Spy0006" FT /MGAS10750_orthologue="MGAS10750_Spy0006" FT /MGAS2096_orthologue="MGAS2096_Spy0006" FT /MGAS315_orthologue="trcF" FT /MGAS5005_orthologue="M5005_Spy0006" FT /MGAS6180_orthologue="M28_Spy0006" FT /MGAS8232_orthologue="trcF" FT /MGAS9429_orthologue="MGAS9429_Spy0006" FT /SSI_1_orthologue="SPs0006" FT /class="2.2.03" FT /cluster="Spy_40:0018 2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00006.out" FT /gene="trcF" FT /product="putative transcription-repair coupling factor" FT /systematic_id="SpyM50006" FT misc_feature 6665..6958 FT /colour=9 FT /domain="HMMPfam:PF02559;CarD-like/TRCF FT domain;5.8e-51;codon 487-584" FT /id="SpyM50006" FT /label=HMMPfam FT /note="HMMPfam hit to PF02559, CarD-like/TRCF domain, FT score 5.8e-51" FT misc_feature 7034..7522 FT /colour=9 FT /domain="HMMPfam:PF04851;Type III restriction enzyme, res FT subunit;1.5e-06;codon 610-772" FT /id="SpyM50006" FT /label=HMMPfam FT /note="HMMPfam hit to PF04851, Type III restriction FT enzyme, res subunit, score 1.5e-06" FT misc_feature 7040..7537 FT /colour=9 FT /domain="HMMPfam:PF00270;DEAD/DEAH box FT helicase;1e-37;codon 612-777" FT /id="SpyM50006" FT /label=HMMPfam FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, FT score 1e-37" FT misc_feature 7121..7144 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 7727..7960 FT /colour=9 FT /domain="HMMPfam:PF00271;Helicase conserved C-terminal FT domain;5e-18;codon 841-918" FT /id="SpyM50006" FT /label=HMMPfam FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain, score 5e-18" FT misc_feature 8240..8566 FT /colour=9 FT /domain="HMMPfam:PF03461;TRCF domain;2.8e-47;codon FT 1012-1120" FT /id="SpyM50006" FT /label=HMMPfam FT /note="HMMPfam hit to PF03461, TRCF domain, score 2.8e-47" FT CDS 8872..9144 FT /M1_GAS_orthologue="SPy0009" FT /MGAS10270_orthologue="MGAS10270_Spy0007" FT /MGAS10394_orthologue="M6_Spy0007" FT /MGAS10750_orthologue="MGAS10750_Spy0007" FT /MGAS2096_orthologue="MGAS2096_Spy0007" FT /MGAS315_orthologue="SpyM3_0007" FT /MGAS5005_orthologue="M5005_Spy0007" FT /MGAS6180_orthologue="M28_Spy0007" FT /MGAS8232_orthologue="spyM18_0008" FT /MGAS9429_orthologue="MGAS9429_Spy0007" FT /SSI_1_orthologue="SPs0007" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00007.out" FT /product="S4 domain containing protein" FT /systematic_id="SpyM50007" FT misc_feature 8872..9012 FT /colour=9 FT /domain="HMMPfam:PF01479;S4 domain;1.3e-10;codon 1-47" FT /id="SpyM50007" FT /label=HMMPfam FT /note="HMMPfam hit to PF01479, S4 domain, score 1.3e-10" FT CDS 9131..9502 FT /M1_GAS_orthologue="SPy0010" FT /MGAS10270_orthologue="MGAS10270_Spy0008" FT /MGAS10394_orthologue="M6_Spy0008" FT /MGAS10750_orthologue="MGAS10750_Spy0008" FT /MGAS2096_orthologue="MGAS2096_Spy0008" FT /MGAS315_orthologue="divIC" FT /MGAS5005_orthologue="M5005_Spy0008" FT /MGAS6180_orthologue="M28_Spy0008" FT /MGAS8232_orthologue="divIC" FT /MGAS9429_orthologue="MGAS9429_Spy0008" FT /SSI_1_orthologue="SPs0008" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00008.out" FT /note="Weakly similar to Bacillus subtilis cell division FT protein DivIC SWALL:DIVC_BACSU (SWALL:P37471) (125 aa) FT fasta scores: E(): 0.84, 21.84% id in 119 aa" FT /product="putative septum formation initiator protein" FT /similarity="fasta; SWALL:DIVC_BACSU (SWALL:P37471); FT Bacillus subtilis; cell division protein DiviC; diviC; FT length 125 aa; id=21.84%; ungapped id=23%; E()=0.84; ; 119 FT aa overlap; query 2-117 aa; subject 5-120 aa" FT /systematic_id="SpyM50008" FT misc_feature 9239..9292 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="37,54" FT /id="SpyM50008" FT /note="1 probable transmembrane helix predicted for FT SpyM50008 by TMHMM2.0 at aa 37-54" FT /type="TMHMM" FT CDS 9499..9624 FT /MGAS10270_orthologue="MGAS10270_Spy0009" FT /MGAS10394_orthologue="M6_Spy0009" FT /MGAS10750_orthologue="MGAS10750_Spy0009" FT /MGAS2096_orthologue="MGAS2096_Spy0009" FT /MGAS5005_orthologue="M5005_Spy0009" FT /MGAS6180_orthologue="M28_Spy0009" FT /MGAS9429_orthologue="MGAS9429_Spy0009" FT /SSI_1_orthologue="SPs0009" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00009.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50009" FT CDS 9637..10923 FT /EC_number="3.5.2.6" FT /M1_GAS_orthologue="SPy0012" FT /MGAS10270_orthologue="MGAS10270_Spy0010" FT /MGAS10394_orthologue="M6_Spy0010" FT /MGAS10750_orthologue="MGAS10750_Spy0010" FT /MGAS2096_orthologue="MGAS2096_Spy0010" FT /MGAS315_orthologue="SpyM3_0009" FT /MGAS5005_orthologue="M5005_Spy0010" FT /MGAS6180_orthologue="M28_Spy0010" FT /MGAS8232_orthologue="spyM18_0011" FT /MGAS9429_orthologue="MGAS9429_Spy0010" FT /SSI_1_orthologue="SPs0010" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00010.out" FT /product="putative exported protein" FT /systematic_id="SpyM50010" FT misc_feature 9637..9699 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.743" FT /colour=3 FT /coord="21,22" FT /id="SpyM50010" FT /note="Signal peptide predicted for SpyM50010 by SignalP FT 2.0 HMM (Signal peptide probability 0.990) with cleavage FT site probability 0.743 between residues 21 and 22" FT /signal="0.990" FT /type="signalp" FT CDS 10920..12206 FT /M1_GAS_orthologue="SPy0013" FT /MGAS10270_orthologue="MGAS10270_Spy0011" FT /MGAS10394_orthologue="M6_Spy0011" FT /MGAS10750_orthologue="MGAS10750_Spy0011" FT /MGAS2096_orthologue="MGAS2096_Spy0011" FT /MGAS315_orthologue="mesJ" FT /MGAS5005_orthologue="M5005_Spy0011" FT /MGAS6180_orthologue="M28_Spy0011" FT /MGAS8232_orthologue="mesJ" FT /MGAS9429_orthologue="MGAS9429_Spy0011" FT /SSI_1_orthologue="SPs0011" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00011.out" FT /note="N-terminus is weakly similar to the N-terminal FT region Escherichia coli putative cell cycle protein MesJ FT SWALL:MESJ_ECOLI (SWALL:P52097) (432 aa) fasta scores: FT E(): 7.3e-12, 31.64% id in 237 aa" FT /product="PP-loop family protein" FT /similarity="fasta; SWALL:MESJ_ECOLI (SWALL:P52097); FT Escherichia coli; putative cell cycle protein MesJ; mesJ; FT length 432 aa; id=31.64%; ungapped id=34.4%; E()=7.3e-12; FT ; 237 aa overlap; query 21-245 aa; subject 13-242 aa" FT /systematic_id="SpyM50011" FT misc_feature 10980..11048 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /id="SpyM50011" FT /note="1 probable transmembrane helix predicted for FT SpyM50011 by TMHMM2.0 at aa 21-43" FT /type="TMHMM" FT misc_feature 10983..11561 FT /colour=9 FT /domain="HMMPfam:PF01171;PP-loop family;1.1e-95;codon FT 22-214" FT /id="SpyM50011" FT /label=HMMPfam FT /note="HMMPfam hit to PF01171, PP-loop family, score FT 1.1e-95" FT CDS 12211..12753 FT /EC_number="2.4.2.8" FT /MGAS10270_orthologue="MGAS10270_Spy0012" FT /MGAS10394_orthologue="M6_Spy0012" FT /MGAS10750_orthologue="MGAS10750_Spy0012" FT /MGAS2096_orthologue="MGAS2096_Spy0012" FT /MGAS315_orthologue="hpt" FT /MGAS5005_orthologue="M5005_Spy0012" FT /MGAS6180_orthologue="M28_Spy0012" FT /MGAS8232_orthologue="hpt" FT /MGAS9429_orthologue="MGAS9429_Spy0012" FT /SSI_1_orthologue="SPs0012" FT /class="3.3.17" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00012.out" FT /gene="hpt" FT /product="hypoxanthine-guanine phosphoribosyltransferase" FT /similarity="fasta; with=UniProt:HPRT_LACLA FT (EMBL:AE006241); Lactococcus lactis (subsp. lactis) FT (Streptococcus lactis).; hpt; Hypoxanthine-guanine FT phosphoribosyltransferase (EC 2.4.2.8) (HGPRT) FT (HGPRTase).; length=183; id 68.715%; ungapped id 69.101%; FT E()=3.5e-44; 179 aa overlap; query 2-180; subject 6-183" FT /systematic_id="SpyM50012" FT misc_feature 12223..12657 FT /colour=9 FT /domain="HMMPfam:PF00156;Phosphoribosyl transferase FT domain;4.8e-34;codon 5-149" FT /id="SpyM50012" FT /label=HMMPfam FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 4.8e-34" FT misc_feature 12493..12531 FT /colour=8 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS 12775..14754 FT /M1_GAS_orthologue="SPy0015" FT /MGAS10270_orthologue="MGAS10270_Spy0013" FT /MGAS10394_orthologue="M6_Spy0013" FT /MGAS10750_orthologue="MGAS10750_Spy0013" FT /MGAS2096_orthologue="MGAS2096_Spy0014" FT /MGAS315_orthologue="ftsH" FT /MGAS5005_orthologue="M5005_Spy0013" FT /MGAS6180_orthologue="M28_Spy0013" FT /MGAS8232_orthologue="ftsH" FT /MGAS9429_orthologue="MGAS9429_Spy0013" FT /SSI_1_orthologue="SPs0013" FT /class="1.7.1" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00013.out" FT /gene="ftsH" FT /gene="hflB" FT /product="putative cell division protease FtsH" FT /similarity="fasta; with=UniProt:FTSH_ECO57 FT (EMBL:AE005546); Escherichia coli O157:H7.; hflB; Cell FT division protease ftsH (EC 3.4.24.-).; length=EC ( 644; id FT 46.602%; ungapped id 49.231%; E()=5.2e-91; 618 aa overlap; FT query 11-623; subject 3-592" FT /systematic_id="SpyM50013" FT misc_feature join(12811..12867,13177..13245) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,31" FT /coord="135,157" FT /id="SpyM50013" FT /note="2 probable transmembrane helices predicted for FT SpyM50013 by TMHMM2.0 at aa 13-31 and 135-157" FT /type="TMHMM" FT misc_feature 12889..13362 FT /colour=9 FT /domain="HMMPfam:PF06480;FtsH Extracellular;2e-37;codon FT 39-196" FT /id="SpyM50013" FT /label=HMMPfam FT /note="HMMPfam hit to PF06480, FtsH Extracellular, score FT 2e-37" FT misc_feature 13438..14001 FT /colour=9 FT /domain="HMMPfam:PF00004;ATPase family associated with FT various c;7e-92;codon 222-409" FT /id="SpyM50013" FT /label=HMMPfam FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various c, score 7e-92" FT misc_feature 13453..13476 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 13750..13806 FT /colour=8 FT /note="PS00674 AAA-protein family signature." FT misc_feature 14017..14643 FT /colour=9 FT /domain="HMMPfam:PF01434;Peptidase family M41;7e-111;codon FT 415-623" FT /id="SpyM50013" FT /label=HMMPfam FT /note="HMMPfam hit to PF01434, Peptidase family M41, score FT 7e-111" FT CDS 15079..16470 FT /M1_GAS_orthologue="SPy0016" FT /MGAS10270_orthologue="MGAS10270_Spy0014" FT /MGAS10394_orthologue="M6_Spy0015" FT /MGAS10750_orthologue="MGAS10750_Spy0014" FT /MGAS2096_orthologue="MGAS2096_Spy0015" FT /MGAS315_orthologue="SpyM3_0013" FT /MGAS5005_orthologue="M5005_Spy0014" FT /MGAS6180_orthologue="M28_Spy0014" FT /MGAS8232_orthologue="spyM18_0015" FT /MGAS9429_orthologue="MGAS9429_Spy0014" FT /SSI_1_orthologue="SPs0014" FT /class="1.5.1" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00014.out" FT /product="putative amino acid permease" FT /systematic_id="SpyM50014" FT misc_feature 15079..15225 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.433" FT /colour=3 FT /coord="49,50" FT /id="SpyM50014" FT /note="Signal peptide predicted for SpyM50014 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.433 between residues 49 and 50" FT /signal="1.000" FT /type="signalp" FT misc_feature 15148..16467 FT /colour=9 FT /domain="HMMPfam:PF00324;Amino acid permease;2.4e-20;codon FT 24-463" FT /id="SpyM50014" FT /label=HMMPfam FT /note="HMMPfam hit to PF00324, Amino acid permease, score FT 2.4e-20" FT misc_feature join(15151..15219,15229..15297,15331..15399,15520..15588,15607..15675,15718..15786,15847..15915,16000..16068,16129..16197,16210..16278,16315..16368,16378..16446) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="25,47" FT /coord="51,73" FT /coord="85,107" FT /coord="148,170" FT /coord="177,199" FT /coord="214,236" FT /coord="257,279" FT /coord="308,330" FT /coord="351,373" FT /coord="378,400" FT /coord="413,430" FT /coord="434,456" FT /id="SpyM50014" FT /note="12 probable transmembrane helices predicted for FT SpyM50014 by TMHMM2.0 at aa 25-47, 51-73, 85-107, 148-170, FT 177-199, 214-236, 257-279, 308-330, 351-373, 378-400, FT 413-430 and 434-456" FT /type="TMHMM" FT misc_feature 15715..15738 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT rRNA 17043..18549 FT /label=16S rRNA FT /note="16S rRNA" FT tRNA 18636..18708 FT /anticodon=(pos:18669..18671,aa:Ala) FT /gene="tRNA-Ala" FT /note="tRNA Ala anticodon TGC, Cove score 73.15" FT /product="transfer RNA-Ala" FT rRNA 19034..21907 FT /label=23s rRNA FT /note="23s rRNA" FT rRNA 21995..22110 FT /label=5s rRNA FT /note="5s rRNA" FT tRNA 22128..22200 FT /anticodon=(pos:22161..22163,aa:Val) FT /gene="tRNA-Val" FT /note="tRNA Val anticodon TAC, Cove score 68.42" FT /product="transfer RNA-Val" FT tRNA 22218..22290 FT /anticodon=(pos:22251..22253,aa:Asp) FT /gene="tRNA-Asp" FT /note="tRNA Asp anticodon GTC, Cove score 82.91" FT /product="transfer RNA-Asp" FT tRNA 22322..22394 FT /anticodon=(pos:22355..22357,aa:Lys) FT /gene="tRNA-Lys" FT /note="tRNA Lys anticodon TTT, Cove score 78.98" FT /product="transfer RNA-Lys" FT tRNA 22400..22481 FT /anticodon=(pos:22434..22436,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon TAG, Cove score 42.97" FT /product="transfer RNA-Leu" FT tRNA 22492..22564 FT /anticodon=(pos:22525..22527,aa:Thr) FT /gene="tRNA-Thr" FT /note="tRNA Thr anticodon TGT, Cove score 71.26" FT /product="transfer RNA-Thr" FT tRNA 22577..22648 FT /anticodon=(pos:22609..22611,aa:Gly) FT /gene="tRNA-Gly" FT /note="tRNA Gly anticodon GCC, Cove score 74.06" FT /product="transfer RNA-Gly" FT tRNA 22657..22741 FT /anticodon=(pos:22691..22693,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon TAA, Cove score 54.82" FT /product="transfer RNA-Leu" FT tRNA 22758..22831 FT /anticodon=(pos:22792..22794,aa:Arg) FT /gene="tRNA-Arg" FT /note="tRNA Arg anticodon ACG, Cove score 69.55" FT /product="transfer RNA-Arg" FT tRNA 22838..22911 FT /anticodon=(pos:22872..22874,aa:Pro) FT /gene="tRNA-Pro" FT /note="tRNA Pro anticodon TGG, Cove score 61.18" FT /product="transfer RNA-Pro" FT rRNA 23044..24550 FT /label=16s rRNA FT /note="16s rRNA" FT tRNA 24637..24709 FT /anticodon=(pos:24670..24672,aa:Ala) FT /gene="tRNA-Ala" FT /note="tRNA Ala anticodon TGC, Cove score 73.15" FT /product="transfer RNA-Ala" FT rRNA 25008..27908 FT /label=23s rRNA FT /note="23s rRNA" FT rRNA 27996..28111 FT /label=5s rRNA FT /note="5s rRNA" FT tRNA 28129..28201 FT /anticodon=(pos:28162..28164,aa:Val) FT /gene="tRNA-Val" FT /note="tRNA Val anticodon TAC, Cove score 68.42" FT /product="transfer RNA-Val" FT tRNA 28219..28291 FT /anticodon=(pos:28252..28254,aa:Asp) FT /gene="tRNA-Asp" FT /note="tRNA Asp anticodon GTC, Cove score 82.91" FT /product="transfer RNA-Asp" FT tRNA 28323..28395 FT /anticodon=(pos:28356..28358,aa:Lys) FT /gene="tRNA-Lys" FT /note="tRNA Lys anticodon TTT, Cove score 78.98" FT /product="transfer RNA-Lys" FT tRNA 28401..28482 FT /anticodon=(pos:28435..28437,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon TAG, Cove score 42.97" FT /product="transfer RNA-Leu" FT tRNA 28493..28565 FT /anticodon=(pos:28526..28528,aa:Thr) FT /gene="tRNA-Thr" FT /note="tRNA Thr anticodon TGT, Cove score 71.26" FT /product="transfer RNA-Thr" FT tRNA 28578..28649 FT /anticodon=(pos:28610..28612,aa:Gly) FT /gene="tRNA-Gly" FT /note="tRNA Gly anticodon GCC, Cove score 74.06" FT /product="transfer RNA-Gly" FT tRNA 28658..28742 FT /anticodon=(pos:28692..28694,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon TAA, Cove score 54.82" FT /product="transfer RNA-Leu" FT tRNA 28759..28832 FT /anticodon=(pos:28793..28795,aa:Arg) FT /gene="tRNA-Arg" FT /note="tRNA Arg anticodon ACG, Cove score 69.55" FT /product="transfer RNA-Arg" FT tRNA 28839..28912 FT /anticodon=(pos:28873..28875,aa:Pro) FT /gene="tRNA-Pro" FT /note="tRNA Pro anticodon TGG, Cove score 61.18" FT /product="transfer RNA-Pro" FT tRNA 28918..28991 FT /anticodon=(pos:28952..28954,aa:Met) FT /gene="tRNA-Met" FT /note="tRNA Met anticodon CAT, Cove score 69.60" FT /product="transfer RNA-Met" FT tRNA 29012..29085 FT /anticodon=(pos:29046..29048,aa:Met) FT /gene="tRNA-Met" FT /note="tRNA Met anticodon CAT, Cove score 80.52" FT /product="transfer RNA-Met" FT tRNA 29108..29197 FT /anticodon=(pos:29144..29146,aa:Ser) FT /gene="tRNA-Ser" FT /note="tRNA Ser anticodon TGA, Cove score 37.00" FT /product="transfer RNA-Ser" FT tRNA 29220..29292 FT /anticodon=(pos:29253..29255,aa:Phe) FT /gene="tRNA-Phe" FT /note="tRNA Phe anticodon GAA, Cove score 46.28" FT /product="transfer RNA-Phe" FT tRNA 29305..29375 FT /anticodon=(pos:29337..29339,aa:Gly) FT /gene="tRNA-Gly" FT /note="tRNA Gly anticodon TCC, Cove score 69.41" FT /product="transfer RNA-Gly" FT tRNA 29410..29483 FT /anticodon=(pos:29444..29446,aa:Ile) FT /gene="tRNA-Ile" FT /note="tRNA Ile anticodon GAT, Cove score 80.30" FT /product="transfer RNA-Ile" FT tRNA 29493..29580 FT /anticodon=(pos:29527..29529,aa:Ser) FT /gene="tRNA-Ser" FT /note="tRNA Ser anticodon GCT, Cove score 31.75" FT /product="transfer RNA-Ser" FT CDS 30944..32140 FT /M1_GAS_orthologue="SPy0019" FT /MGAS10270_orthologue="MGAS10270_Spy0017" FT /MGAS10394_orthologue="M6_Spy0017" FT /MGAS10750_orthologue="MGAS10750_Spy0017" FT /MGAS2096_orthologue="MGAS2096_Spy0018" FT /MGAS315_orthologue="SpyM3_0014" FT /MGAS5005_orthologue="M5005_Spy0017" FT /MGAS6180_orthologue="M28_Spy0017" FT /MGAS8232_orthologue="spyM18_0020" FT /MGAS9429_orthologue="MGAS9429_Spy0017" FT /SSI_1_orthologue="SPs0015" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00015.out" FT /product="putative amidase" FT /systematic_id="SpyM50015" FT misc_feature 30944..31015 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.996" FT /colour=3 FT /coord="24,25" FT /id="SpyM50015" FT /note="Signal peptide predicted for SpyM50015 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.996 between residues 24 and 25" FT /signal="1.000" FT /type="signalp" FT misc_feature 31790..32131 FT /colour=9 FT /domain="HMMPfam:PF05257;CHAP domain;7.3e-46;codon FT 283-396" FT /id="SpyM50015" FT /label=HMMPfam FT /note="HMMPfam hit to PF05257, CHAP domain, score 7.3e-46" FT CDS 32393..33355 FT /EC_number="2.7.6.1" FT /M1_GAS_orthologue="SPy0020" FT /MGAS10270_orthologue="MGAS10270_Spy0018" FT /MGAS10394_orthologue="M6_Spy0018" FT /MGAS10750_orthologue="MGAS10750_Spy0018" FT /MGAS2096_orthologue="MGAS2096_Spy0019" FT /MGAS315_orthologue="prsA" FT /MGAS5005_orthologue="M5005_Spy0018" FT /MGAS6180_orthologue="M28_Spy0018" FT /MGAS8232_orthologue="prsA" FT /MGAS9429_orthologue="MGAS9429_Spy0018" FT /SSI_1_orthologue="SPs0016" FT /class="3.7.1" FT /cluster="Spy_40:0019 2" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00016.out" FT /gene="prsA1" FT /gene="prs1" FT /note="Similar to SpyM50943, 55.380% identity (56.452% FT ungapped) in 316 aa overlap" FT /product="ribose-phosphate pyrophosphokinase 1" FT /systematic_id="SpyM50016" FT misc_feature 32750..32779 FT /colour=8 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature 32780..32827 FT /colour=8 FT /note="PS00114 Phosphoribosyl pyrophosphate synthetase FT signature." FT misc_feature 32813..33214 FT /colour=9 FT /domain="HMMPfam:PF00156;Phosphoribosyl transferase FT domain;3.3e-33;codon 145-278" FT /id="SpyM50016" FT /label=HMMPfam FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 3.3e-33" FT misc_feature 33050..33088 FT /colour=8 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS 33541..34296 FT /M1_GAS_orthologue="SPy0021" FT /MGAS10270_orthologue="MGAS10270_Spy0019" FT /MGAS10394_orthologue="M6_Spy0019" FT /MGAS10750_orthologue="MGAS10750_Spy0019" FT /MGAS2096_orthologue="MGAS2096_Spy0020" FT /MGAS315_orthologue="SpyM3_0016" FT /MGAS5005_orthologue="M5005_Spy0019" FT /MGAS6180_orthologue="M28_Spy0019" FT /MGAS8232_orthologue="spyM18_0022" FT /MGAS9429_orthologue="MGAS9429_Spy0019" FT /SSI_1_orthologue="SPs0017" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00017.out" FT /gene="recO" FT /product="DNA repair protein RecO" FT /systematic_id="SpyM50017" FT misc_feature 33541..34275 FT /colour=9 FT /domain="HMMPfam:PF02565;Recombination protein FT O;2.6e-20;codon 1-245" FT /id="SpyM50017" FT /label=HMMPfam FT /note="HMMPfam hit to PF02565, Recombination protein O, FT score 2.6e-20" FT misc_feature 33994..34011 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 34399..35406 FT /M1_GAS_orthologue="SPy0022" FT /MGAS10270_orthologue="MGAS10270_Spy0020" FT /MGAS10394_orthologue="M6_Spy0069" FT /MGAS10750_orthologue="MGAS10750_Spy0020" FT /MGAS2096_orthologue="MGAS2096_Spy0021" FT /MGAS315_orthologue="plsX" FT /MGAS5005_orthologue="M5005_Spy0020" FT /MGAS6180_orthologue="M28_Spy0020" FT /MGAS8232_orthologue="spyM18_0023" FT /MGAS9429_orthologue="MGAS9429_Spy0020" FT /SSI_1_orthologue="SPs0018" FT /class="3.6.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00018.out" FT /gene="plsX" FT /product="fatty acid/phospholipid synthesis protein" FT /systematic_id="SpyM50018" FT misc_feature 34402..35364 FT /colour=9 FT /domain="HMMPfam:PF02504;Fatty acid synthesis FT protein;1.6e-127;codon 2-322" FT /id="SpyM50018" FT /label=HMMPfam FT /note="HMMPfam hit to PF02504, Fatty acid synthesis FT protein, score 1.6e-127" FT CDS 35399..35641 FT /M1_GAS_orthologue="SPy0023" FT /MGAS10270_orthologue="MGAS10270_Spy0021" FT /MGAS10394_orthologue="M6_Spy0070" FT /MGAS10750_orthologue="MGAS10750_Spy0021" FT /MGAS2096_orthologue="MGAS2096_Spy0022" FT /MGAS315_orthologue="acpP.1" FT /MGAS5005_orthologue="M5005_Spy0021" FT /MGAS6180_orthologue="M28_Spy0021" FT /MGAS8232_orthologue="acp" FT /MGAS9429_orthologue="MGAS9429_Spy0021" FT /SSI_1_orthologue="SPs0019" FT /class="3.3.21" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00019.out" FT /product="putative acyl carrier protein" FT /systematic_id="SpyM50019" FT CDS join(35792..36016,36015..36497) FT /EC_number="6.3.2.6" FT /M1_GAS_orthologue="SPy0024" FT /MGAS10270_orthologue="MGAS10270_Spy0022" FT /MGAS10394_orthologue="M6_Spy0071" FT /MGAS10750_orthologue="MGAS10750_Spy0022" FT /MGAS2096_orthologue="MGAS2096_Spy0023" FT /MGAS315_orthologue="purC" FT /MGAS5005_orthologue="M5005_Spy0022" FT /MGAS6180_orthologue="M28_Spy0022" FT /MGAS8232_orthologue="purC" FT /MGAS9429_orthologue="MGAS9429_Spy0022" FT /SSI_1_orthologue="SPs0020" FT /class="3.7.1" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.00020.out" FT /gene="purC" FT /note="CDS contains a frameshift mutation after codon 74. FT Frameshift occurs at a poly A heptamer" FT /product="phosphoribosylaminoimidazole-succinocarboxamide FT synthase (pseudogene)" FT /pseudo FT /systematic_id="SpyM50020" FT misc_feature 35795..36484 FT /colour=9 FT /domain="HMMPfam:PF01259;SAICAR synthetase;3.6e-103;codon FT 2-231" FT /id="SpyM50020" FT /label=HMMPfam FT /note="HMMPfam hit to PF01259, SAICAR synthetase, score FT 3.6e-103" FT misc_feature 36045..36089 FT /colour=8 FT /note="PS01057 SAICAR synthetase signature 1." FT misc_feature 36306..36332 FT /colour=8 FT /note="PS01058 SAICAR synthetase signature 2." FT CDS 36573..40346 FT /EC_number="6.3.5.3" FT /M1_GAS_orthologue="SPy0025" FT /MGAS10270_orthologue="MGAS10270_Spy0023" FT /MGAS10394_orthologue="M6_Spy0072" FT /MGAS10750_orthologue="MGAS10750_Spy0023" FT /MGAS2096_orthologue="MGAS2096_Spy0024" FT /MGAS315_orthologue="purL" FT /MGAS5005_orthologue="M5005_Spy0023" FT /MGAS6180_orthologue="M28_Spy0023" FT /MGAS8232_orthologue="purL" FT /MGAS9429_orthologue="MGAS9429_Spy0023" FT /SSI_1_orthologue="SPs0021" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.01806.out" FT /note="Internal region is similar to the N-terminal region FT of Mycobacterium tuberculosis, and Mycobacterium bovis FT phosphoribosylformylglycinamidine synthase II PurL FT SWALL:PURL_MYCTU (SWALL:P54876) (754 aa) fasta scores: FT E(): 1.6e-26, 27.28% id in 667 aa" FT /product="putative phosphoribosylformylglycinamidine FT synthase protein" FT /similarity="fasta; SWALL:PURL_MYCTU (SWALL:P54876); FT Mycobacterium tuberculosis, and Mycobacterium bovis; FT phosphoribosylformylglycinamidine synthase ii; purL; FT length 754 aa; id=27.28%; ungapped id=30.13%; E()=1.6e-26; FT ; 667 aa overlap; query 270-902 aa; subject 26-663 aa" FT /systematic_id="SpyM50022" FT misc_feature 37935..38396 FT /colour=9 FT /domain="HMMPfam:PF02769;AIR synthase related protein, FT C-terminal do;5.7e-34;codon 455-608" FT /id="SpyM50022" FT /label=HMMPfam FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal do, score 5.7e-34" FT misc_feature 38823..38897 FT /colour=8 FT /note="PS01159 WW/rsp5/WWP domain signature." FT misc_feature 39576..40055 FT /colour=9 FT /domain="HMMPfam:PF01965;DJ-1/PfpI family;0.0059;codon FT 1002-1161" FT /id="SpyM50022" FT /label=HMMPfam FT /note="HMMPfam hit to PF01965, DJ-1/PfpI family, score FT 0.0059" FT CDS 40580..42034 FT /EC_number="2.4.2.14" FT /M1_GAS_orthologue="SPy0026" FT /MGAS10270_orthologue="MGAS10270_Spy0025" FT /MGAS10394_orthologue="M6_Spy0073" FT /MGAS10750_orthologue="MGAS10750_Spy0024" FT /MGAS2096_orthologue="MGAS2096_Spy0025" FT /MGAS315_orthologue="purF" FT /MGAS5005_orthologue="M5005_Spy0024" FT /MGAS6180_orthologue="M28_Spy0024" FT /MGAS8232_orthologue="purF" FT /MGAS9429_orthologue="MGAS9429_Spy0024" FT /SSI_1_orthologue="SPs0022" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00022.out" FT /gene="purF" FT /product="putative amidophosphoribosyltransferase FT precursor" FT /systematic_id="SpyM50023" FT misc_feature 40580..40627 FT /colour=8 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 40613..41023 FT /colour=9 FT /domain="HMMPfam:PF00310;Glutamine amidotransferases FT class-II;4.4e-50;codon 12-148" FT /id="SpyM50023" FT /label=HMMPfam FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 4.4e-50" FT misc_feature 41354..41773 FT /colour=9 FT /domain="HMMPfam:PF00156;Phosphoribosyl transferase FT domain;2.9e-09;codon 259-398" FT /id="SpyM50023" FT /label=HMMPfam FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 2.9e-09" FT misc_feature 41636..41674 FT /colour=8 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS 42062..43084 FT /EC_number="6.3.3.1" FT /M1_GAS_orthologue="SPy0027" FT /MGAS10270_orthologue="MGAS10270_Spy0026" FT /MGAS10394_orthologue="M6_Spy0074" FT /MGAS10750_orthologue="MGAS10750_Spy0025" FT /MGAS2096_orthologue="MGAS2096_Spy0026" FT /MGAS315_orthologue="purM" FT /MGAS5005_orthologue="M5005_Spy0025" FT /MGAS6180_orthologue="M28_Spy0025" FT /MGAS8232_orthologue="purM" FT /MGAS9429_orthologue="MGAS9429_Spy0025" FT /SSI_1_orthologue="SPs0023" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00023.out" FT /gene="purM" FT /product="phosphoribosylformylglycinamidine cyclo-ligase" FT /systematic_id="SpyM50024" FT misc_feature 42068..42553 FT /colour=9 FT /domain="HMMPfam:PF00586;AIR synthase related protein, FT N-terminal dom;1.6e-66;codon 3-164" FT /id="SpyM50024" FT /label=HMMPfam FT /note="HMMPfam hit to PF00586, AIR synthase related FT protein, N-terminal dom, score 1.6e-66" FT misc_feature 42584..43081 FT /colour=9 FT /domain="HMMPfam:PF02769;AIR synthase related protein, FT C-terminal dom;1.2e-47;codon 175-340" FT /id="SpyM50024" FT /label=HMMPfam FT /note="HMMPfam hit to PF02769, AIR synthase related FT protein, C-terminal dom, score 1.2e-47" FT CDS 43252..43806 FT /EC_number="2.1.2.2" FT /M1_GAS_orthologue="SPy0028" FT /MGAS10270_orthologue="MGAS10270_Spy0027" FT /MGAS10394_orthologue="M6_Spy0075" FT /MGAS10750_orthologue="MGAS10750_Spy0026" FT /MGAS2096_orthologue="MGAS2096_Spy0027" FT /MGAS315_orthologue="purN" FT /MGAS5005_orthologue="M5005_Spy0026" FT /MGAS6180_orthologue="M28_Spy0026" FT /MGAS8232_orthologue="purN" FT /MGAS9429_orthologue="MGAS9429_Spy0026" FT /SSI_1_orthologue="SPs0024" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00024.out" FT /gene="purN" FT /product="phosphoribosylglycinamide formyltransferase" FT /systematic_id="SpyM50025" FT misc_feature 43252..43773 FT /colour=9 FT /domain="HMMPfam:PF00551;Formyl transferase;3.3e-60;codon FT 1-174" FT /id="SpyM50025" FT /label=HMMPfam FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 3.3e-60" FT CDS join(43990..45063,45067..45537) FT /EC_number="3.5.4.10" FT /EC_number="2.1.2.3" FT /MGAS10270_orthologue="MGAS10270_Spy0028" FT /MGAS10394_orthologue="M6_Spy0076" FT /MGAS10750_orthologue="MGAS10750_Spy0027" FT /MGAS2096_orthologue="MGAS2096_Spy0028" FT /MGAS315_orthologue="purH" FT /MGAS5005_orthologue="M5005_Spy0027" FT /MGAS6180_orthologue="M28_Spy0027" FT /MGAS8232_orthologue="purH" FT /MGAS9429_orthologue="MGAS9429_Spy0027" FT /SSI_1_orthologue="SPs0025" FT /class="3.7.1" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.00025.out" FT /gene="purH" FT /note="CDS similar to Bacillus subtilis bifunctional FT purine biosynthesis protein purh [includes: FT phosphoribosylaminoimidazolecarboxamide formyltransferase FT PurH or PurHJ or bsu06520 SWALL:PUR9_BACSU (SWALL:P12048) FT (512 aa) fasta scores: E(): 9.3e-116, 59.57% id in 512 aa. FT CDS has a nonsense mutation (ochre) after codon 358" FT /product="bifunctional purine biosynthesis protein PurH FT [includes: phosphoribosylaminoimidazolecarboxamide FT formyltransferase; IMP cyclohydrolase] (pseudogene)" FT /pseudo FT /systematic_id="SpyM50027" FT misc_feature 44029..44376 FT /colour=9 FT /domain="HMMPfam:PF02142;MGS-like domain;3.2e-55;codon FT 14-129" FT /id="SpyM50027" FT /label=HMMPfam FT /note="HMMPfam hit to PF02142, MGS-like domain, score FT 3.2e-55" FT misc_feature 44389..45336 FT /colour=9 FT /domain="HMMPfam:PF01808;AICARFT/IMPCHase FT bienzyme;1.5e-147;codon 134-449" FT /id="SpyM50027" FT /label=HMMPfam FT /note="HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme, FT score 1.5e-147" FT CDS complement(45596..46720) FT /M1_GAS_orthologue="SPy0031" FT /MGAS10270_orthologue="MGAS10270_Spy0029" FT /MGAS10394_orthologue="M6_Spy0077" FT /MGAS2096_orthologue="MGAS2096_Spy0029" FT /MGAS315_orthologue="SpyM3_0025" FT /MGAS5005_orthologue="M5005_Spy0028" FT /MGAS6180_orthologue="M28_Spy0028" FT /MGAS8232_orthologue="spyM18_0031" FT /MGAS9429_orthologue="MGAS9429_Spy0028" FT /SSI_1_orthologue="SPs0026" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00026.out" FT /product="putative amidase" FT /systematic_id="SpyM50028" FT misc_feature complement(46211..46585) FT /colour=9 FT /domain="HMMPfam:PF05257;CHAP domain;3.4e-37;codon 46-170" FT /id="SpyM50028" FT /label=HMMPfam FT /note="HMMPfam hit to PF05257, CHAP domain, score 3.4e-37" FT misc_feature complement(46607..46720) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.841" FT /colour=3 FT /coord="38,39" FT /id="SpyM50028" FT /note="Signal peptide predicted for SpyM50028 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.841 between residues 38 and 39" FT /signal="0.999" FT /type="signalp" FT misc_feature complement(46634..46702) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,29" FT /id="SpyM50028" FT /note="1 probable transmembrane helix predicted for FT SpyM50028 by TMHMM2.0 at aa 7-29" FT /type="TMHMM" FT CDS 46973..48238 FT /EC_number="6.3.4.13" FT /M1_GAS_orthologue="SPy0032" FT /MGAS10270_orthologue="MGAS10270_Spy0030" FT /MGAS10394_orthologue="M6_Spy0078" FT /MGAS10750_orthologue="MGAS10750_Spy0030" FT /MGAS2096_orthologue="MGAS2096_Spy0030" FT /MGAS315_orthologue="purD" FT /MGAS5005_orthologue="M5005_Spy0029" FT /MGAS6180_orthologue="M28_Spy0029" FT /MGAS8232_orthologue="purD" FT /MGAS9429_orthologue="MGAS9429_Spy0029" FT /SSI_1_orthologue="SPs0027" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00027.out" FT /gene="purD" FT /product="phosphoribosylamine-glycine ligase" FT /systematic_id="SpyM50029" FT misc_feature 46973..47275 FT /colour=9 FT /domain="HMMPfam:PF02844;Phosphoribosylglycinamide FT synthetase, N doma;8.9e-40;codon 1-101" FT /id="SpyM50029" FT /label=HMMPfam FT /note="HMMPfam hit to PF02844, Phosphoribosylglycinamide FT synthetase, N doma, score 8.9e-40" FT misc_feature 47279..47527 FT /colour=9 FT /domain="HMMPfam:PF02842;Phosphoribosylglycinamide FT synthetase, B doma;9.2e-42;codon 103-185" FT /id="SpyM50029" FT /label=HMMPfam FT /note="HMMPfam hit to PF02842, Phosphoribosylglycinamide FT synthetase, B doma, score 9.2e-42" FT misc_feature 47528..47938 FT /colour=9 FT /domain="HMMPfam:PF01071;Phosphoribosylglycinamide FT synthetase, ATP-gr;7.5e-78;codon 186-322" FT /id="SpyM50029" FT /label=HMMPfam FT /note="HMMPfam hit to PF01071, Phosphoribosylglycinamide FT synthetase, ATP-gr, score 7.5e-78" FT misc_feature 47834..47857 FT /colour=8 FT /note="PS00184 Phosphoribosylglycinamide synthetase FT signature." FT misc_feature 47951..48229 FT /colour=9 FT /domain="HMMPfam:PF02843;Phosphoribosylglycinamide FT synthetase, C doma;1.1e-13;codon 327-419" FT /id="SpyM50029" FT /label=HMMPfam FT /note="HMMPfam hit to PF02843, Phosphoribosylglycinamide FT synthetase, C doma, score 1.1e-13" FT CDS 48519..49007 FT /EC_number="4.1.1.21" FT /M1_GAS_orthologue="SPy0033" FT /MGAS10270_orthologue="MGAS10270_Spy0031" FT /MGAS10750_orthologue="MGAS10750_Spy0031" FT /MGAS2096_orthologue="MGAS2096_Spy0031" FT /MGAS9429_orthologue="MGAS9429_Spy0030" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00028.out" FT /gene="purE" FT /product="putative phosphoribosylaminoimidazole FT carboxylase catalytic subunit" FT /systematic_id="SpyM50030" FT misc_feature 48525..49001 FT /colour=9 FT /domain="HMMPfam:PF00731;AIR carboxylase;4.9e-89;codon FT 3-161" FT /id="SpyM50030" FT /label=HMMPfam FT /note="HMMPfam hit to PF00731, AIR carboxylase, score FT 4.9e-89" FT CDS 48994..50067 FT /EC_number="4.1.1.21" FT /M1_GAS_orthologue="SPy0034" FT /MGAS10270_orthologue="MGAS10270_Spy0032" FT /MGAS10394_orthologue="M6_Spy0080" FT /MGAS10750_orthologue="MGAS10750_Spy0032" FT /MGAS2096_orthologue="MGAS2096_Spy0032" FT /MGAS315_orthologue="purK" FT /MGAS5005_orthologue="M5005_Spy0031" FT /MGAS6180_orthologue="M28_Spy0031" FT /MGAS8232_orthologue="purK" FT /MGAS9429_orthologue="MGAS9429_Spy0031" FT /SSI_1_orthologue="SPs0029" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00029.out" FT /gene="purK" FT /product="putative phosphoribosylaminoimidazole FT carboxylase ATPase subunit" FT /systematic_id="SpyM50031" FT misc_feature 49090..49563 FT /colour=9 FT /domain="HMMPfam:PF02222;ATP-grasp domain;1.4e-13;codon FT 16-173" FT /id="SpyM50031" FT /label=HMMPfam FT /note="HMMPfam hit to PF02222, ATP-grasp domain, score FT 1.4e-13" FT CDS 50069..51487 FT /MGAS6180_orthologue="M28_Spy0032" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00030.out" FT /note="No significant database matches" FT /product="hypothetical protein" FT /systematic_id="SpyM50032" FT CDS 51507..52799 FT /EC_number="4.3.2.2" FT /M1_GAS_orthologue="SPy0036" FT /MGAS10270_orthologue="MGAS10270_Spy0034" FT /MGAS10394_orthologue="M6_Spy0082" FT /MGAS10750_orthologue="MGAS10750_Spy0035" FT /MGAS2096_orthologue="MGAS2096_Spy0035" FT /MGAS315_orthologue="purB" FT /MGAS5005_orthologue="M5005_Spy0033" FT /MGAS6180_orthologue="M28_Spy0033" FT /MGAS8232_orthologue="purB" FT /MGAS9429_orthologue="MGAS9429_Spy0034" FT /SSI_1_orthologue="SPs0031" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00031.out" FT /gene="purB" FT /product="adenylosuccinate lyase" FT /systematic_id="SpyM50033" FT misc_feature 51513..52364 FT /colour=9 FT /domain="HMMPfam:PF00206;Lyase;1.8e-91;codon 3-286" FT /id="SpyM50033" FT /label=HMMPfam FT /note="HMMPfam hit to PF00206, Lyase, score 1.8e-91" FT misc_feature 52287..52316 FT /colour=8 FT /note="PS00163 Fumarate lyases signature." FT CDS 52930..53841 FT /M1_GAS_orthologue="SPy0037" FT /MGAS10270_orthologue="MGAS10270_Spy0035" FT /MGAS10394_orthologue="M6_Spy0083" FT /MGAS10750_orthologue="MGAS10750_Spy0036" FT /MGAS2096_orthologue="MGAS2096_Spy0036" FT /MGAS315_orthologue="SpyM3_0031" FT /MGAS5005_orthologue="M5005_Spy0034" FT /MGAS6180_orthologue="M28_Spy0034" FT /MGAS8232_orthologue="spyM18_0038" FT /MGAS9429_orthologue="MGAS9429_Spy0035" FT /SSI_1_orthologue="SPs0032" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00032.out" FT /product="putative DNA-binding protein" FT /systematic_id="SpyM50034" FT misc_feature 52954..53121 FT /colour=9 FT /domain="HMMPfam:PF01381;Helix-turn-helix;1.2e-07;codon FT 9-64" FT /id="SpyM50034" FT /label=HMMPfam FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 1.2e-07" FT CDS 54061..55059 FT /M1_GAS_orthologue="SPy0038" FT /MGAS10270_orthologue="MGAS10270_Spy0037" FT /MGAS10394_orthologue="M6_Spy0084" FT /MGAS10750_orthologue="MGAS10750_Spy0037" FT /MGAS2096_orthologue="MGAS2096_Spy0037" FT /MGAS315_orthologue="ruvB" FT /MGAS5005_orthologue="M5005_Spy0035" FT /MGAS6180_orthologue="M28_Spy0035" FT /MGAS8232_orthologue="ruvB" FT /MGAS9429_orthologue="MGAS9429_Spy0036" FT /SSI_1_orthologue="SPs0033" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00033.out" FT /gene="ruvB" FT /product="Holliday junction DNA helicase, subunit B" FT /systematic_id="SpyM50035" FT misc_feature 54064..54219 FT /colour=9 FT /domain="HMMPfam:PF05496;Holliday junction DNA helicase FT ruvB N-termin;6.4e-28;codon 2-53" FT /id="SpyM50035" FT /label=HMMPfam FT /note="HMMPfam hit to PF05496, Holliday junction DNA FT helicase ruvB N-termin, score 6.4e-28" FT misc_feature 54220..54759 FT /colour=9 FT /domain="HMMPfam:PF00004;ATPase family associated with FT various cellul;1.4e-27;codon 54-233" FT /id="SpyM50035" FT /label=HMMPfam FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellul, score 1.4e-27" FT misc_feature 54235..54258 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 54808..55044 FT /colour=9 FT /domain="HMMPfam:PF05491;Holliday junction DNA helicase FT ruvB C-termin;1.4e-53;codon 250-328" FT /id="SpyM50035" FT /label=HMMPfam FT /note="HMMPfam hit to PF05491, Holliday junction DNA FT helicase ruvB C-termin, score 1.4e-53" FT CDS 55197..55634 FT /EC_number="3.1.3.48" FT /M1_GAS_orthologue="SPy0039" FT /MGAS10270_orthologue="MGAS10270_Spy0038" FT /MGAS10394_orthologue="M6_Spy0085" FT /MGAS10750_orthologue="MGAS10750_Spy0038" FT /MGAS2096_orthologue="MGAS2096_Spy0038" FT /MGAS315_orthologue="SpyM3_0033" FT /MGAS5005_orthologue="M5005_Spy0036" FT /MGAS6180_orthologue="M28_Spy0036" FT /MGAS8232_orthologue="spyM18_0040" FT /MGAS9429_orthologue="MGAS9429_Spy0037" FT /SSI_1_orthologue="SPs0034" FT /class="2.2.10" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00034.out" FT /product="putative phosphotyrosine protein phosphatase" FT /systematic_id="SpyM50036" FT misc_feature 55200..55613 FT /colour=9 FT /domain="HMMPfam:PF01451;Low molecular weight FT phosphotyrosine protein;8.5e-31;codon 2-139" FT /id="SpyM50036" FT /label=HMMPfam FT /note="HMMPfam hit to PF01451, Low molecular weight FT phosphotyrosine protein, score 8.5e-31" FT CDS 55657..56058 FT /M1_GAS_orthologue="SPy0040" FT /MGAS10270_orthologue="MGAS10270_Spy0039" FT /MGAS10394_orthologue="M6_Spy0086" FT /MGAS10750_orthologue="MGAS10750_Spy0039" FT /MGAS2096_orthologue="MGAS2096_Spy0039" FT /MGAS315_orthologue="SpyM3_0034" FT /MGAS5005_orthologue="M5005_Spy0037" FT /MGAS6180_orthologue="M28_Spy0037" FT /MGAS8232_orthologue="spyM18_0041" FT /MGAS9429_orthologue="MGAS9429_Spy0038" FT /SSI_1_orthologue="SPs0035" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00035.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50037" FT misc_feature 55714..55773 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="20,39" FT /id="SpyM50037" FT /note="1 probable transmembrane helix predicted for FT SpyM50037 by TMHMM2.0 at aa 20-39" FT /type="TMHMM" FT misc_feature 55813..55881 FT /colour=9 FT /domain="HMMPfam:PF02493;MORN repeat;0.0001;codon 53-75" FT /id="SpyM50037" FT /label=HMMPfam FT /note="HMMPfam hit to PF02493, MORN repeat, score 0.0001" FT misc_feature 55882..55950 FT /colour=9 FT /domain="HMMPfam:PF02493;MORN repeat;1.1e-05;codon 76-98" FT /id="SpyM50037" FT /label=HMMPfam FT /note="HMMPfam hit to PF02493, MORN repeat, score 1.1e-05" FT misc_feature 55951..56019 FT /colour=9 FT /domain="HMMPfam:PF02493;MORN repeat;0.0021;codon 99-121" FT /id="SpyM50037" FT /label=HMMPfam FT /note="HMMPfam hit to PF02493, MORN repeat, score 0.0021" FT CDS 56055..57830 FT /M1_GAS_orthologue="SPy0041" FT /MGAS10394_orthologue="M6_Spy0087" FT /MGAS10750_orthologue="MGAS10750_Spy0040" FT /MGAS2096_orthologue="MGAS2096_Spy0040" FT /MGAS315_orthologue="SpyM3_0035" FT /MGAS5005_orthologue="M5005_Spy0038" FT /MGAS6180_orthologue="M28_Spy0038" FT /MGAS8232_orthologue="spyM18_0042" FT /MGAS9429_orthologue="MGAS9429_Spy0039" FT /SSI_1_orthologue="SPs0036" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00036.out" FT /product="acyltransferase family protein" FT /systematic_id="SpyM50038" FT misc_feature 56061..57113 FT /colour=9 FT /domain="HMMPfam:PF01757;Acyltransferase FT family;9e-31;codon 3-353" FT /id="SpyM50038" FT /label=HMMPfam FT /note="HMMPfam hit to PF01757, Acyltransferase family, FT score 9e-31" FT misc_feature join(56067..56123,56133..56201,56259..56324,56442..56510,56547..56606,56634..56702,56760..56828,56838..56906,56943..57011,57024..57092,57153..57221) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="5,23" FT /coord="27,49" FT /coord="69,90" FT /coord="130,152" FT /coord="165,184" FT /coord="194,216" FT /coord="236,258" FT /coord="262,284" FT /coord="297,319" FT /coord="324,346" FT /coord="367,389" FT /id="SpyM50038" FT /note="11 probable transmembrane helices predicted for FT SpyM50038 by TMHMM2.0 at aa 5-23, 27-49, 69-90, 130-152, FT 165-184, 194-216, 236-258, 262-284, 297-319, 324-346 and FT 367-389" FT /type="TMHMM" FT CDS 58139..60781 FT /EC_number="1.1.1.1" FT /EC_number="1.2.1.10" FT /MGAS10270_orthologue="MGAS10270_Spy0042" FT /MGAS10394_orthologue="M6_Spy0088" FT /MGAS10750_orthologue="MGAS10750_Spy0041" FT /MGAS2096_orthologue="MGAS2096_Spy0041" FT /MGAS315_orthologue="adh2" FT /MGAS5005_orthologue="M5005_Spy0039" FT /MGAS6180_orthologue="M28_Spy0039" FT /MGAS8232_orthologue="adhE" FT /MGAS9429_orthologue="MGAS9429_Spy0040" FT /SSI_1_orthologue="SPs0037" FT /class="3.5.4" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00037.out" FT /gene="adhE" FT /product="aldehyde-alcohol dehydrogenase 2 [includes: FT alcohol dehydrogenase; acetaldehyde dehydrogenase]" FT /systematic_id="SpyM50039" FT misc_feature 59546..60721 FT /colour=9 FT /domain="HMMPfam:PF00465;Iron-containing alcohol FT dehydrogenase;4.2e-139;codon 470-861" FT /id="SpyM50039" FT /label=HMMPfam FT /note="HMMPfam hit to PF00465, Iron-containing alcohol FT dehydrogenase, score 4.2e-139" FT misc_feature 60068..60154 FT /colour=8 FT /note="PS00913 Iron-containing alcohol dehydrogenases FT signature 1." FT misc_feature 60326..60388 FT /colour=8 FT /note="PS00060 Iron-containing alcohol dehydrogenases FT signature 2." FT CDS 61033..62049 FT /EC_number="1.1.1.1" FT /M1_GAS_orthologue="SPy0044" FT /MGAS10270_orthologue="MGAS10270_Spy0043" FT /MGAS10394_orthologue="M6_Spy0090" FT /MGAS10750_orthologue="MGAS10750_Spy0042" FT /MGAS315_orthologue="adh1" FT /MGAS5005_orthologue="M5005_Spy0040" FT /MGAS6180_orthologue="M28_Spy0040" FT /MGAS8232_orthologue="adhP" FT /MGAS9429_orthologue="MGAS9429_Spy0041" FT /SSI_1_orthologue="SPs0038" FT /class="3.5.4" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00038.out" FT /gene="adhP" FT /product="alcohol dehydrogenase" FT /systematic_id="SpyM50040" FT misc_feature 61054..62040 FT /colour=9 FT /domain="HMMPfam:PF00107;Zinc-binding FT dehydrogenase;1.2e-108;codon 8-336" FT /id="SpyM50040" FT /label=HMMPfam FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 1.2e-108" FT misc_feature 61135..61152 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 61204..61248 FT /colour=8 FT /note="PS00059 Zinc-containing alcohol dehydrogenases FT signature." FT CDS 62437..63726 FT /M1_GAS_orthologue="SPy0045" FT /MGAS10270_orthologue="MGAS10270_Spy0044" FT /MGAS10394_orthologue="M6_Spy0091" FT /MGAS10750_orthologue="MGAS10750_Spy0043" FT /MGAS2096_orthologue="MGAS2096_Spy0045" FT /MGAS315_orthologue="SpyM3_0038" FT /MGAS6180_orthologue="M28_Spy0041" FT /MGAS8232_orthologue="spyM18_0048" FT /MGAS9429_orthologue="MGAS9429_Spy0042" FT /SSI_1_orthologue="SPs0039" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00039.out" FT /product="multi antimicrobial extrusion (MATE) family FT transporter" FT /systematic_id="SpyM50041" FT misc_feature 62476..62958 FT /colour=9 FT /domain="HMMPfam:PF01554;MatE;4.1e-28;codon 14-174" FT /id="SpyM50041" FT /label=HMMPfam FT /note="HMMPfam hit to PF01554, MatE, score 4.1e-28" FT misc_feature join(62527..62595,62605..62658,62695..62754,62812..62880,62917..62976,62989..63057,63157..63216,63244..63303,63340..63408,63451..63519,63580..63648) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="31,53" FT /coord="57,74" FT /coord="87,106" FT /coord="126,148" FT /coord="161,180" FT /coord="185,207" FT /coord="241,260" FT /coord="270,289" FT /coord="302,324" FT /coord="339,361" FT /coord="382,404" FT /id="SpyM50041" FT /note="11 probable transmembrane helices predicted for FT SpyM50041 by TMHMM2.0 at aa 31-53, 57-74, 87-106, 126-148, FT 161-180, 185-207, 241-260, 270-289, 302-324, 339-361 and FT 382-404" FT /type="TMHMM" FT misc_feature 63118..63603 FT /colour=9 FT /domain="HMMPfam:PF01554;MatE;2.3e-30;codon 228-389" FT /id="SpyM50041" FT /label=HMMPfam FT /note="HMMPfam hit to PF01554, MatE, score 2.3e-30" FT repeat_unit 63716..63730 FT /colour=2 FT /note="direct repeat" FT repeat_region 63730..64794 FT /colour=0 FT /note="IS1239" FT CDS join(63830..64591,64590..64823) FT /class="5.1.4" FT /cluster="Spy_40:0000 9" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01809.out" FT /note="Similar to Streptococcus pyogenes insertion FT sequence IS1239 putative transposase SWALL:Q54534 FT (EMBL:U11799) (326 aa) fasta scores: E(): 4.3e-114, 93.49% FT id in 323 aa. CDS has a frameshift mutation after codon FT 254" FT /product="insertion sequence IS1239 putative transposase FT (pseudogene)" FT /pseudo FT /similarity="fasta; SWALL:Q54534 (EMBL:U11799); FT Streptococcus pyogenes; insertion sequence is1239 putative FT transposase; ; length 326 aa; id=93.49%; ungapped FT id=93.78%; E()=4.3e-114; ; 323 aa overlap; query 1-322 aa; FT subject 1-323 aa" FT /systematic_id="SpyM50042" FT misc_feature 64337..64771 FT /colour=9 FT /domain="HMMPfam:PF00665;Integrase core FT domain;2.3e-10;codon 170-314" FT /id="SpyM50042" FT /label=HMMPfam FT /note="HMMPfam hit to PF00665, Integrase core domain, FT score 2.3e-10" FT repeat_unit 64796..64810 FT /colour=2 FT /note="direct repeat" FT CDS 65004..65312 FT /M1_GAS_orthologue="SPy0047" FT /MGAS10270_orthologue="MGAS10270_Spy0045" FT /MGAS10394_orthologue="M6_Spy0092" FT /MGAS10750_orthologue="MGAS10750_Spy0044" FT /MGAS2096_orthologue="MGAS2096_Spy0046" FT /MGAS315_orthologue="rpsJ" FT /MGAS5005_orthologue="M5005_Spy0043" FT /MGAS6180_orthologue="M28_Spy0042" FT /MGAS8232_orthologue="rpsJ" FT /MGAS9429_orthologue="MGAS9429_Spy0043" FT /SSI_1_orthologue="SPs0040" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00041.out" FT /gene="rpsJ" FT /product="30S ribosomal protein S10" FT /systematic_id="SpyM50043" FT misc_feature 65016..65303 FT /colour=9 FT /domain="HMMPfam:PF00338;Ribosomal protein FT S10p/S20e;4.7e-57;codon 5-100" FT /id="SpyM50043" FT /label=HMMPfam FT /note="HMMPfam hit to PF00338, Ribosomal protein FT S10p/S20e, score 4.7e-57" FT misc_feature 65088..65135 FT /colour=8 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 65560..66186 FT /M1_GAS_orthologue="SPy0049" FT /MGAS10270_orthologue="MGAS10270_Spy0046" FT /MGAS10394_orthologue="M6_Spy0093" FT /MGAS2096_orthologue="MGAS2096_Spy0047" FT /MGAS315_orthologue="rplC" FT /MGAS5005_orthologue="M5005_Spy0044" FT /MGAS6180_orthologue="M28_Spy0043" FT /MGAS8232_orthologue="rplC" FT /MGAS9429_orthologue="MGAS9429_Spy0044" FT /SSI_1_orthologue="SPs0042" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00042.out" FT /gene="rplC" FT /product="50S ribosomal protein L3" FT /systematic_id="SpyM50044" FT misc_feature 65584..66162 FT /colour=9 FT /domain="HMMPfam:PF00297;Ribosomal protein FT L3;5.9e-90;codon 9-201" FT /id="SpyM50044" FT /label=HMMPfam FT /note="HMMPfam hit to PF00297, Ribosomal protein L3, score FT 5.9e-90" FT misc_feature 65857..65928 FT /colour=8 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 66210..66833 FT /M1_GAS_orthologue="SPy0050" FT /MGAS10270_orthologue="MGAS10270_Spy0047" FT /MGAS10394_orthologue="M6_Spy0094" FT /MGAS315_orthologue="rplD" FT /MGAS5005_orthologue="M5005_Spy0045" FT /MGAS6180_orthologue="M28_Spy0044" FT /MGAS8232_orthologue="rplD" FT /MGAS9429_orthologue="MGAS9429_Spy0045" FT /SSI_1_orthologue="SPs0043" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00043.out" FT /gene="rplD" FT /product="50S ribosomal protein L4" FT /systematic_id="SpyM50045" FT misc_feature 66255..66824 FT /colour=9 FT /domain="HMMPfam:PF00573;Ribosomal protein L4/L1 FT family;2.7e-72;codon 16-205" FT /id="SpyM50045" FT /label=HMMPfam FT /note="HMMPfam hit to PF00573, Ribosomal protein L4/L1 FT family, score 2.7e-72" FT CDS 66833..67129 FT /M1_GAS_orthologue="SPy0051" FT /MGAS10270_orthologue="MGAS10270_Spy0048" FT /MGAS10394_orthologue="M6_Spy0095" FT /MGAS10750_orthologue="MGAS10750_Spy0049" FT /MGAS2096_orthologue="MGAS2096_Spy0050" FT /MGAS315_orthologue="rplW" FT /MGAS5005_orthologue="M5005_Spy0046" FT /MGAS6180_orthologue="M28_Spy0045" FT /MGAS8232_orthologue="rplW" FT /MGAS9429_orthologue="MGAS9429_Spy0046" FT /SSI_1_orthologue="SPs0044" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00044.out" FT /gene="rplW" FT /product="50S ribosomal protein L23" FT /systematic_id="SpyM50046" FT misc_feature 66842..67117 FT /colour=9 FT /domain="HMMPfam:PF00276;Ribosomal protein FT L23;1.3e-31;codon 4-95" FT /id="SpyM50046" FT /label=HMMPfam FT /note="HMMPfam hit to PF00276, Ribosomal protein L23, FT score 1.3e-31" FT misc_feature 67061..67108 FT /colour=8 FT /note="PS00050 Ribosomal protein L23 signature." FT CDS 67147..67980 FT /M1_GAS_orthologue="SPy0052" FT /MGAS10270_orthologue="MGAS10270_Spy0049" FT /MGAS10394_orthologue="M6_Spy0096" FT /MGAS10750_orthologue="MGAS10750_Spy0050" FT /MGAS2096_orthologue="MGAS2096_Spy0051" FT /MGAS315_orthologue="rplB" FT /MGAS5005_orthologue="M5005_Spy0047" FT /MGAS6180_orthologue="M28_Spy0046" FT /MGAS8232_orthologue="rplB" FT /MGAS9429_orthologue="MGAS9429_Spy0047" FT /SSI_1_orthologue="SPs0045" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00045.out" FT /gene="rplB" FT /product="50S ribosomal protein L2" FT /systematic_id="SpyM50047" FT misc_feature 67270..67500 FT /colour=9 FT /domain="HMMPfam:PF00181;Ribosomal Proteins L2, RNA FT binding dom;3.3e-47;codon 42-118" FT /id="SpyM50047" FT /label=HMMPfam FT /note="HMMPfam hit to PF00181, Ribosomal Proteins L2, RNA FT binding dom, score 3.3e-47" FT misc_feature 67516..67905 FT /colour=9 FT /domain="HMMPfam:PF03947;Ribosomal Proteins L2, C-terminal FT doma;8.6e-88;codon 124-253" FT /id="SpyM50047" FT /label=HMMPfam FT /note="HMMPfam hit to PF03947, Ribosomal Proteins L2, FT C-terminal doma, score 8.6e-88" FT misc_feature 67798..67833 FT /colour=8 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 68119..68397 FT /M1_GAS_orthologue="SPy0053" FT /MGAS10270_orthologue="MGAS10270_Spy0050" FT /MGAS10394_orthologue="M6_Spy0097" FT /MGAS10750_orthologue="MGAS10750_Spy0051" FT /MGAS2096_orthologue="MGAS2096_Spy0052" FT /MGAS315_orthologue="rpsS" FT /MGAS5005_orthologue="M5005_Spy0048" FT /MGAS6180_orthologue="M28_Spy0047" FT /MGAS8232_orthologue="rpsS" FT /MGAS9429_orthologue="MGAS9429_Spy0048" FT /SSI_1_orthologue="SPs0046" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00046.out" FT /gene="rpsS" FT /product="30S ribosomal protein S19" FT /systematic_id="SpyM50048" FT misc_feature 68125..68367 FT /colour=9 FT /domain="HMMPfam:PF00203;Ribosomal protein FT S19;2.9e-51;codon 21-101" FT /id="SpyM50048" FT /label=HMMPfam FT /note="HMMPfam hit to PF00203, Ribosomal protein S19, FT score 2.9e-51" FT misc_feature 68275..68349 FT /colour=8 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 68413..68757 FT /M1_GAS_orthologue="SPy0055" FT /MGAS10270_orthologue="MGAS10270_Spy0051" FT /MGAS10394_orthologue="M6_Spy0098" FT /MGAS10750_orthologue="MGAS10750_Spy0052" FT /MGAS2096_orthologue="MGAS2096_Spy0053" FT /MGAS315_orthologue="rplV" FT /MGAS5005_orthologue="M5005_Spy0049" FT /MGAS6180_orthologue="M28_Spy0048" FT /MGAS8232_orthologue="rplV" FT /MGAS9429_orthologue="MGAS9429_Spy0049" FT /SSI_1_orthologue="SPs0047" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00047.out" FT /gene="rplV" FT /product="50S ribosomal protein L22" FT /systematic_id="SpyM50049" FT misc_feature 68437..68751 FT /colour=9 FT /domain="HMMPfam:PF00237;Ribosomal protein FT L22p/L17e;2.1e-60;codon 9-113" FT /id="SpyM50049" FT /label=HMMPfam FT /note="HMMPfam hit to PF00237, Ribosomal protein FT L22p/L17e, score 2.1e-60" FT misc_feature 68671..68745 FT /colour=8 FT /note="PS00464 Ribosomal protein L22 signature." FT CDS 68770..69423 FT /M1_GAS_orthologue="SPy0056" FT /MGAS10270_orthologue="MGAS10270_Spy0052" FT /MGAS10394_orthologue="M6_Spy0099" FT /MGAS10750_orthologue="MGAS10750_Spy0053" FT /MGAS2096_orthologue="MGAS2096_Spy0054" FT /MGAS315_orthologue="rpsC" FT /MGAS5005_orthologue="M5005_Spy0050" FT /MGAS6180_orthologue="M28_Spy0049" FT /MGAS8232_orthologue="rpsC" FT /MGAS9429_orthologue="MGAS9429_Spy0050" FT /SSI_1_orthologue="SPs0048" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00048.out" FT /gene="rpsC" FT /product="30S ribosomal protein S3" FT /systematic_id="SpyM50050" FT misc_feature 68770..68952 FT /colour=9 FT /domain="HMMPfam:PF00417;Ribosomal protein S3, N-terminal FT domai;4.3e-32;codon 1-61" FT /id="SpyM50050" FT /label=HMMPfam FT /note="HMMPfam hit to PF00417, Ribosomal protein S3, FT N-terminal domai, score 4.3e-32" FT misc_feature 68953..69117 FT /colour=9 FT /domain="HMMPfam:PF07650;KH domain;1.7e-22;codon 62-116" FT /id="SpyM50050" FT /label=HMMPfam FT /note="HMMPfam hit to PF07650, KH domain, score 1.7e-22" FT misc_feature 69121..69372 FT /colour=9 FT /domain="HMMPfam:PF00189;Ribosomal protein S3, C-terminal FT domai;2.3e-50;codon 118-201" FT /id="SpyM50050" FT /label=HMMPfam FT /note="HMMPfam hit to PF00189, Ribosomal protein S3, FT C-terminal domai, score 2.3e-50" FT misc_feature 69253..69357 FT /colour=8 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 69427..69840 FT /M1_GAS_orthologue="SPy0057" FT /MGAS10270_orthologue="MGAS10270_Spy0053" FT /MGAS10394_orthologue="M6_Spy0100" FT /MGAS10750_orthologue="MGAS10750_Spy0054" FT /MGAS2096_orthologue="MGAS2096_Spy0055" FT /MGAS315_orthologue="rplP" FT /MGAS5005_orthologue="M5005_Spy0051" FT /MGAS6180_orthologue="M28_Spy0050" FT /MGAS8232_orthologue="rplP" FT /MGAS9429_orthologue="MGAS9429_Spy0051" FT /SSI_1_orthologue="SPs0049" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00049.out" FT /gene="rplP" FT /product="50S ribosomal protein L16" FT /systematic_id="SpyM50051" FT misc_feature 69427..69822 FT /colour=9 FT /domain="HMMPfam:PF00252;Ribosomal protein FT L16;2.5e-82;codon 1-132" FT /id="SpyM50051" FT /label=HMMPfam FT /note="HMMPfam hit to PF00252, Ribosomal protein L16, FT score 2.5e-82" FT misc_feature 69601..69636 FT /colour=8 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 69670..69705 FT /colour=8 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 69850..70056 FT /M1_GAS_orthologue="SPy0059" FT /MGAS10270_orthologue="MGAS10270_Spy0054" FT /MGAS10750_orthologue="MGAS10750_Spy0055" FT /MGAS2096_orthologue="MGAS2096_Spy0056" FT /MGAS315_orthologue="rpmC" FT /MGAS5005_orthologue="M5005_Spy0052" FT /MGAS6180_orthologue="M28_Spy0051" FT /MGAS8232_orthologue="rpmC" FT /MGAS9429_orthologue="MGAS9429_Spy0052" FT /SSI_1_orthologue="SPs0050" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00050.out" FT /gene="rpmC" FT /product="50S ribosomal protein L29" FT /systematic_id="SpyM50052" FT misc_feature 69877..70050 FT /colour=9 FT /domain="HMMPfam:PF00831;Ribosomal L29 FT protein;4.5e-29;codon 10-67" FT /id="SpyM50052" FT /label=HMMPfam FT /note="HMMPfam hit to PF00831, Ribosomal L29 protein, FT score 4.5e-29" FT CDS 70082..70342 FT /M1_GAS_orthologue="SPy0060" FT /MGAS10270_orthologue="MGAS10270_Spy0055" FT /MGAS10394_orthologue="M6_Spy0102" FT /MGAS10750_orthologue="MGAS10750_Spy0056" FT /MGAS2096_orthologue="MGAS2096_Spy0057" FT /MGAS315_orthologue="rpsQ" FT /MGAS5005_orthologue="M5005_Spy0053" FT /MGAS6180_orthologue="M28_Spy0052" FT /MGAS8232_orthologue="rpsQ" FT /MGAS9429_orthologue="MGAS9429_Spy0053" FT /SSI_1_orthologue="SPs0051" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00051.out" FT /gene="rpsQ" FT /product="30S ribosomal protein S17" FT /systematic_id="SpyM50053" FT misc_feature 70112..70318 FT /colour=9 FT /domain="HMMPfam:PF00366;Ribosomal protein FT S17;5.7e-37;codon 11-79" FT /id="SpyM50053" FT /label=HMMPfam FT /note="HMMPfam hit to PF00366, Ribosomal protein S17, FT score 5.7e-37" FT misc_feature 70250..70288 FT /colour=8 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS 70367..70735 FT /M1_GAS_orthologue="SPy0061" FT /MGAS10270_orthologue="MGAS10270_Spy0056" FT /MGAS10394_orthologue="M6_Spy0103" FT /MGAS10750_orthologue="MGAS10750_Spy0057" FT /MGAS2096_orthologue="MGAS2096_Spy0058" FT /MGAS315_orthologue="rplN" FT /MGAS5005_orthologue="M5005_Spy0054" FT /MGAS6180_orthologue="M28_Spy0053" FT /MGAS8232_orthologue="rplN" FT /MGAS9429_orthologue="MGAS9429_Spy0054" FT /SSI_1_orthologue="SPs0052" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00052.out" FT /gene="rplN" FT /product="50S ribosomal protein L14" FT /systematic_id="SpyM50054" FT misc_feature 70367..70732 FT /colour=9 FT /domain="HMMPfam:PF00238;Ribosomal protein FT L14p/L23e;7.2e-78;codon 1-122" FT /id="SpyM50054" FT /label=HMMPfam FT /note="HMMPfam hit to PF00238, Ribosomal protein FT L14p/L23e, score 7.2e-78" FT misc_feature 70544..70624 FT /colour=8 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 70814..71119 FT /M1_GAS_orthologue="SPy0062" FT /MGAS10270_orthologue="MGAS10270_Spy0057" FT /MGAS10394_orthologue="M6_Spy0104" FT /MGAS10750_orthologue="MGAS10750_Spy0059" FT /MGAS2096_orthologue="MGAS2096_Spy0059" FT /MGAS315_orthologue="rplX" FT /MGAS5005_orthologue="M5005_Spy0055" FT /MGAS6180_orthologue="M28_Spy0054" FT /MGAS8232_orthologue="rplX" FT /MGAS9429_orthologue="MGAS9429_Spy0055" FT /SSI_1_orthologue="SPs0053" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00053.out" FT /gene="rplX" FT /product="50S ribosomal protein L24" FT /systematic_id="SpyM50055" FT misc_feature 70820..70921 FT /colour=9 FT /domain="HMMPfam:PF00467;KOW motif;1.2e-09;codon 3-36" FT /id="SpyM50055" FT /label=HMMPfam FT /note="HMMPfam hit to PF00467, KOW motif, score 1.2e-09" FT misc_feature 70829..70882 FT /colour=8 FT /note="PS01108 Ribosomal protein L24 signature." FT CDS 71143..71685 FT /M1_GAS_orthologue="SPy0063" FT /MGAS10270_orthologue="MGAS10270_Spy0058" FT /MGAS10394_orthologue="M6_Spy0105" FT /MGAS10750_orthologue="MGAS10750_Spy0060" FT /MGAS2096_orthologue="MGAS2096_Spy0060" FT /MGAS315_orthologue="rplE" FT /MGAS5005_orthologue="M5005_Spy0056" FT /MGAS6180_orthologue="M28_Spy0055" FT /MGAS8232_orthologue="rplE" FT /MGAS9429_orthologue="MGAS9429_Spy0056" FT /SSI_1_orthologue="SPs0054" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00054.out" FT /gene="rplE" FT /product="50S ribosomal protein L5" FT /systematic_id="SpyM50056" FT misc_feature 71215..71385 FT /colour=9 FT /domain="HMMPfam:PF00281;Ribosomal protein FT L5;6.6e-30;codon 25-81" FT /id="SpyM50056" FT /label=HMMPfam FT /note="HMMPfam hit to PF00281, Ribosomal protein L5, score FT 6.6e-30" FT misc_feature 71314..71364 FT /colour=8 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 71395..71679 FT /colour=9 FT /domain="HMMPfam:PF00673;ribosomal L5P family FT C-terminus;1.7e-52;codon 85-179" FT /id="SpyM50056" FT /label=HMMPfam FT /note="HMMPfam hit to PF00673, ribosomal L5P family FT C-terminus, score 1.7e-52" FT CDS 71701..71886 FT /M1_GAS_orthologue="SPy0064" FT /MGAS10270_orthologue="MGAS10270_Spy0059" FT /MGAS10394_orthologue="M6_Spy0106" FT /MGAS10750_orthologue="MGAS10750_Spy0061" FT /MGAS315_orthologue="rpsN.1" FT /MGAS5005_orthologue="M5005_Spy0057" FT /MGAS6180_orthologue="M28_Spy0056" FT /MGAS8232_orthologue="rpsN" FT /MGAS9429_orthologue="MGAS9429_Spy0057" FT /SSI_1_orthologue="SPs0055" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00055.out" FT /gene="rpsN" FT /product="30S ribosomal protein S14" FT /systematic_id="SpyM50057" FT misc_feature 71713..71880 FT /colour=9 FT /domain="HMMPfam:PF00253;Ribosomal protein FT S14p/S29e;3e-19;codon 5-60" FT /id="SpyM50057" FT /label=HMMPfam FT /note="HMMPfam hit to PF00253, Ribosomal protein FT S14p/S29e, score 3e-19" FT misc_feature 71767..71835 FT /colour=8 FT /note="PS00527 Ribosomal protein S14 signature." FT CDS 72037..72435 FT /M1_GAS_orthologue="SPy0065" FT /MGAS10270_orthologue="MGAS10270_Spy0060" FT /MGAS10394_orthologue="M6_Spy0107" FT /MGAS10750_orthologue="MGAS10750_Spy0062" FT /MGAS2096_orthologue="MGAS2096_Spy0061" FT /MGAS315_orthologue="rpsH" FT /MGAS5005_orthologue="M5005_Spy0058" FT /MGAS6180_orthologue="M28_Spy0057" FT /MGAS8232_orthologue="rpsH" FT /MGAS9429_orthologue="MGAS9429_Spy0058" FT /SSI_1_orthologue="SPs0056" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00056.out" FT /gene="rpsH" FT /product="30S ribosomal protein S8" FT /systematic_id="SpyM50058" FT misc_feature 72049..72432 FT /colour=9 FT /domain="HMMPfam:PF00410;Ribosomal protein FT S8;1.6e-75;codon 5-132" FT /id="SpyM50058" FT /label=HMMPfam FT /note="HMMPfam hit to PF00410, Ribosomal protein S8, score FT 1.6e-75" FT misc_feature 72340..72393 FT /colour=8 FT /note="PS00053 Ribosomal protein S8 signature." FT CDS 72638..73174 FT /M1_GAS_orthologue="SPy0066" FT /MGAS10270_orthologue="MGAS10270_Spy0061" FT /MGAS10394_orthologue="M6_Spy0108" FT /MGAS10750_orthologue="MGAS10750_Spy0063" FT /MGAS2096_orthologue="MGAS2096_Spy0062" FT /MGAS315_orthologue="rplF" FT /MGAS5005_orthologue="M5005_Spy0059" FT /MGAS6180_orthologue="M28_Spy0058" FT /MGAS8232_orthologue="rplF" FT /MGAS9429_orthologue="MGAS9429_Spy0059" FT /SSI_1_orthologue="SPs0057" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00057.out" FT /gene="rplF" FT /product="50S ribosomal protein L6" FT /systematic_id="SpyM50059" FT misc_feature 72668..72883 FT /colour=9 FT /domain="HMMPfam:PF00347;Ribosomal protein FT L6;2.4e-24;codon 11-82" FT /id="SpyM50059" FT /label=HMMPfam FT /note="HMMPfam hit to PF00347, Ribosomal protein L6, score FT 2.4e-24" FT misc_feature 72905..73132 FT /colour=9 FT /domain="HMMPfam:PF00347;Ribosomal protein FT L6;1.1e-29;codon 90-165" FT /id="SpyM50059" FT /label=HMMPfam FT /note="HMMPfam hit to PF00347, Ribosomal protein L6, score FT 1.1e-29" FT misc_feature 73097..73123 FT /colour=8 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 73279..73635 FT /M1_GAS_orthologue="SPy0067" FT /MGAS10270_orthologue="MGAS10270_Spy0062" FT /MGAS10394_orthologue="M6_Spy0109" FT /MGAS10750_orthologue="MGAS10750_Spy0064" FT /MGAS2096_orthologue="MGAS2096_Spy0063" FT /MGAS315_orthologue="rplR" FT /MGAS5005_orthologue="M5005_Spy0060" FT /MGAS6180_orthologue="M28_Spy0059" FT /MGAS8232_orthologue="rplR" FT /MGAS9429_orthologue="MGAS9429_Spy0060" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00058.out" FT /gene="rplR" FT /product="50S ribosomal protein L18" FT /systematic_id="SpyM50060" FT misc_feature 73294..73632 FT /colour=9 FT /domain="HMMPfam:PF00861;Ribosomal L18p/L5e FT family;9.9e-57;codon 6-118" FT /id="SpyM50060" FT /label=HMMPfam FT /note="HMMPfam hit to PF00861, Ribosomal L18p/L5e family, FT score 9.9e-57" FT CDS 73654..74148 FT /M1_GAS_orthologue="SPy0069" FT /MGAS10270_orthologue="MGAS10270_Spy0063" FT /MGAS10394_orthologue="M6_Spy0110" FT /MGAS10750_orthologue="MGAS10750_Spy0065" FT /MGAS2096_orthologue="MGAS2096_Spy0064" FT /MGAS315_orthologue="rpsE" FT /MGAS5005_orthologue="M5005_Spy0061" FT /MGAS6180_orthologue="M28_Spy0060" FT /MGAS8232_orthologue="rpsE" FT /MGAS9429_orthologue="MGAS9429_Spy0061" FT /SSI_1_orthologue="SPs0059" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00059.out" FT /gene="rpsE" FT /product="30S ribosomal protein S5" FT /systematic_id="SpyM50061" FT misc_feature 73678..73878 FT /colour=9 FT /domain="HMMPfam:PF00333;Ribosomal protein S5, N-terminal FT domai;5e-42;codon 9-75" FT /id="SpyM50061" FT /label=HMMPfam FT /note="HMMPfam hit to PF00333, Ribosomal protein S5, FT N-terminal domai, score 5e-42" FT misc_feature 73732..73830 FT /colour=8 FT /note="PS00585 Ribosomal protein S5 signature." FT misc_feature 73903..74124 FT /colour=9 FT /domain="HMMPfam:PF03719;Ribosomal protein S5, C-terminal FT domai;8.2e-35;codon 84-157" FT /id="SpyM50061" FT /label=HMMPfam FT /note="HMMPfam hit to PF03719, Ribosomal protein S5, FT C-terminal domai, score 8.2e-35" FT CDS 74163..74345 FT /M1_GAS_orthologue="SPy0071" FT /MGAS10270_orthologue="MGAS10270_Spy0064" FT /MGAS10394_orthologue="M6_Spy0111" FT /MGAS10750_orthologue="MGAS10750_Spy0066" FT /MGAS2096_orthologue="MGAS2096_Spy0065" FT /MGAS315_orthologue="rpmD" FT /MGAS5005_orthologue="M5005_Spy0062" FT /MGAS6180_orthologue="M28_Spy0061" FT /MGAS8232_orthologue="rpmD" FT /MGAS9429_orthologue="MGAS9429_Spy0062" FT /SSI_1_orthologue="SPs0060" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00060.out" FT /gene="rpmD" FT /product="50S ribosomal protein L30" FT /systematic_id="SpyM50062" FT misc_feature 74166..74324 FT /colour=9 FT /domain="HMMPfam:PF00327;Ribosomal protein FT L30p/L7e;5.2e-15;codon 2-54" FT /id="SpyM50062" FT /label=HMMPfam FT /note="HMMPfam hit to PF00327, Ribosomal protein L30p/L7e, FT score 5.2e-15" FT misc_feature 74226..74324 FT /colour=8 FT /note="PS00634 Ribosomal protein L30 signature." FT CDS 74560..75000 FT /M1_GAS_orthologue="SPy0072" FT /MGAS10270_orthologue="MGAS10270_Spy0065" FT /MGAS10394_orthologue="M6_Spy0112" FT /MGAS10750_orthologue="MGAS10750_Spy0067" FT /MGAS2096_orthologue="MGAS2096_Spy0066" FT /MGAS315_orthologue="rplO" FT /MGAS5005_orthologue="M5005_Spy0063" FT /MGAS6180_orthologue="M28_Spy0062" FT /MGAS8232_orthologue="rplO" FT /MGAS9429_orthologue="MGAS9429_Spy0063" FT /SSI_1_orthologue="SPs0061" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00061.out" FT /gene="rplO" FT /product="50S ribosomal protein L15" FT /systematic_id="SpyM50063" FT misc_feature 74560..74865 FT /colour=9 FT /domain="HMMPfam:PF01305;Ribosomal protein L15 amino FT terminal re;4.8e-58;codon 1-102" FT /id="SpyM50063" FT /label=HMMPfam FT /note="HMMPfam hit to PF01305, Ribosomal protein L15 amino FT terminal re, score 4.8e-58" FT misc_feature 74887..74979 FT /colour=8 FT /note="PS00475 Ribosomal protein L15 signature." FT misc_feature 74887..74982 FT /colour=9 FT /domain="HMMPfam:PF00256;Ribosomal protein FT L15;4.2e-11;codon 110-141" FT /id="SpyM50063" FT /label=HMMPfam FT /note="HMMPfam hit to PF00256, Ribosomal protein L15, FT score 4.2e-11" FT CDS 75017..76321 FT /M1_GAS_orthologue="SPy0073" FT /MGAS10270_orthologue="MGAS10270_Spy0066" FT /MGAS10394_orthologue="M6_Spy0113" FT /MGAS10750_orthologue="MGAS10750_Spy0068" FT /MGAS2096_orthologue="MGAS2096_Spy0067" FT /MGAS315_orthologue="secY" FT /MGAS5005_orthologue="M5005_Spy0064" FT /MGAS6180_orthologue="M28_Spy0063" FT /MGAS8232_orthologue="secY" FT /MGAS9429_orthologue="MGAS9429_Spy0064" FT /SSI_1_orthologue="SPs0062" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00062.out" FT /gene="secY" FT /product="preprotein translocase SecY subunit" FT /systematic_id="SpyM50064" FT misc_feature 75017..75142 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.857" FT /colour=3 FT /coord="42,43" FT /id="SpyM50064" FT /note="Signal peptide predicted for SpyM50064 by SignalP FT 2.0 HMM (Signal peptide probability 0.935) with cleavage FT site probability 0.857 between residues 42 and 43" FT /signal="0.935" FT /type="signalp" FT misc_feature join(75074..75142,75212..75280,75365..75433,75461..75520,75539..75607,75650..75718,75815..75883,75926..75994,76118..76186,76199..76258) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="20,42" FT /coord="66,88" FT /coord="117,139" FT /coord="149,168" FT /coord="175,197" FT /coord="212,234" FT /coord="267,289" FT /coord="304,326" FT /coord="368,390" FT /coord="395,414" FT /id="SpyM50064" FT /note="10 probable transmembrane helices predicted for FT SpyM50064 by TMHMM2.0 at aa 20-42, 66-88, 117-139, FT 149-168, 175-197, 212-234, 267-289, 304-326, 368-390 and FT 395-414" FT /type="TMHMM" FT misc_feature 75221..75280 FT /colour=8 FT /note="PS00755 Protein secY signature 1." FT misc_feature 75221..76264 FT /colour=9 FT /domain="HMMPfam:PF00344;eubacterial secY FT protein;3e-161;codon 69-416" FT /id="SpyM50064" FT /label=HMMPfam FT /note="HMMPfam hit to PF00344, eubacterial secY protein, FT score 3e-161" FT misc_feature 75512..75568 FT /colour=8 FT /note="PS00756 Protein secY signature 2." FT misc_feature 75536..75592 FT /colour=8 FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS 76471..77109 FT /EC_number="2.7.4.3" FT /M1_GAS_orthologue="SPy0074" FT /MGAS10270_orthologue="MGAS10270_Spy0068" FT /MGAS10394_orthologue="M6_Spy0114" FT /MGAS10750_orthologue="MGAS10750_Spy0069" FT /MGAS2096_orthologue="MGAS2096_Spy0068" FT /MGAS315_orthologue="adk" FT /MGAS5005_orthologue="M5005_Spy0065" FT /MGAS6180_orthologue="M28_Spy0064" FT /MGAS8232_orthologue="adk" FT /MGAS9429_orthologue="MGAS9429_Spy0065" FT /SSI_1_orthologue="SPs0063" FT /class="3.3.15" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00063.out" FT /gene="adk" FT /product="adenylate kinase" FT /systematic_id="SpyM50065" FT misc_feature 76483..77031 FT /colour=9 FT /domain="HMMPfam:PF00406;Adenylate kinase;1.3e-85;codon FT 5-187" FT /id="SpyM50065" FT /label=HMMPfam FT /note="HMMPfam hit to PF00406, Adenylate kinase, score FT 1.3e-85" FT misc_feature 76714..76749 FT /colour=8 FT /note="PS00113 Adenylate kinase signature." FT CDS 77227..77445 FT /M1_GAS_orthologue="SPy0075" FT /MGAS10270_orthologue="MGAS10270_Spy0069" FT /MGAS10750_orthologue="MGAS10750_Spy0070" FT /MGAS2096_orthologue="MGAS2096_Spy0069" FT /MGAS315_orthologue="infA" FT /MGAS5005_orthologue="M5005_Spy0066" FT /MGAS6180_orthologue="M28_Spy0065" FT /MGAS8232_orthologue="infA" FT /MGAS9429_orthologue="MGAS9429_Spy0066" FT /class="2.2.10" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00064.out" FT /gene="infA" FT /product="translation initiation factor IF-1" FT /systematic_id="SpyM50066" FT misc_feature 77230..77442 FT /colour=9 FT /domain="HMMPfam:PF00575;S1 RNA binding FT domain;2.9e-13;codon 20-90" FT /id="SpyM50066" FT /label=HMMPfam FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, FT score 2.9e-13" FT CDS 77471..77587 FT /M1_GAS_orthologue="SPy0076" FT /MGAS10394_orthologue="M6_Spy0116" FT /MGAS315_orthologue="rpsJ" FT /MGAS8232_orthologue="rpsJ" FT /SSI_1_orthologue="SPs0065" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.01804.out" FT /gene="rpmJ" FT /product="50S ribosomal protein L36" FT /systematic_id="SpyM50066A" FT misc_feature 77471..77584 FT /colour=9 FT /domain="HMMPfam:PF00444;Ribosomal protein FT L36;2.2e-17;codon 1-38" FT /id="SpyM50066A" FT /label=HMMPfam FT /note="HMMPfam hit to PF00444, Ribosomal protein L36, FT score 2.2e-17" FT CDS 77605..77970 FT /M1_GAS_orthologue="SPy0077" FT /MGAS10270_orthologue="MGAS10270_Spy0071" FT /MGAS10394_orthologue="M6_Spy0117" FT /MGAS10750_orthologue="MGAS10750_Spy0072" FT /MGAS2096_orthologue="MGAS2096_Spy0071" FT /MGAS315_orthologue="rpsM" FT /MGAS5005_orthologue="M5005_Spy0068" FT /MGAS6180_orthologue="M28_Spy0067" FT /MGAS8232_orthologue="rpsM" FT /MGAS9429_orthologue="MGAS9429_Spy0068" FT /SSI_1_orthologue="SPs0066" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00065.out" FT /gene="rpsM" FT /product="30S ribosomal protein S13" FT /systematic_id="SpyM50067" FT misc_feature 77611..77928 FT /colour=9 FT /domain="HMMPfam:PF00416;Ribosomal protein FT S13/S18;5.4e-55;codon 3-108" FT /id="SpyM50067" FT /label=HMMPfam FT /note="HMMPfam hit to PF00416, Ribosomal protein S13/S18, FT score 5.4e-55" FT misc_feature 77863..77904 FT /colour=8 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 77988..78371 FT /M1_GAS_orthologue="SPy0078" FT /MGAS10270_orthologue="MGAS10270_Spy0072" FT /MGAS10394_orthologue="M6_Spy0118" FT /MGAS10750_orthologue="MGAS10750_Spy0073" FT /MGAS2096_orthologue="MGAS2096_Spy0072" FT /MGAS315_orthologue="rpsK" FT /MGAS5005_orthologue="M5005_Spy0069" FT /MGAS6180_orthologue="M28_Spy0068" FT /MGAS8232_orthologue="rpsK" FT /MGAS9429_orthologue="MGAS9429_Spy0069" FT /SSI_1_orthologue="SPs0067" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00066.out" FT /gene="rpsK" FT /product="30S ribosomal protein S11" FT /systematic_id="SpyM50068" FT misc_feature 78036..78365 FT /colour=9 FT /domain="HMMPfam:PF00411;Ribosomal protein S11;2e-72;codon FT 17-126" FT /id="SpyM50068" FT /label=HMMPfam FT /note="HMMPfam hit to PF00411, Ribosomal protein S11, FT score 2e-72" FT misc_feature 78270..78338 FT /colour=8 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 78417..79355 FT /EC_number="2.7.7.6" FT /M1_GAS_orthologue="SPy0080" FT /MGAS10270_orthologue="MGAS10270_Spy0073" FT /MGAS10394_orthologue="M6_Spy0119" FT /MGAS10750_orthologue="MGAS10750_Spy0074" FT /MGAS2096_orthologue="MGAS2096_Spy0073" FT /MGAS315_orthologue="rpoA" FT /MGAS5005_orthologue="M5005_Spy0070" FT /MGAS6180_orthologue="M28_Spy0069" FT /MGAS8232_orthologue="rpoA" FT /MGAS9429_orthologue="MGAS9429_Spy0070" FT /SSI_1_orthologue="SPs0068" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00067.out" FT /gene="rpoA" FT /product="DNA-directed RNA polymerase alpha chain" FT /systematic_id="SpyM50069" FT misc_feature 78456..79088 FT /colour=9 FT /domain="HMMPfam:PF01193;RNA polymerase Rpb3/Rpb11 FT dimerisation;9.6e-22;codon 14-224" FT /id="SpyM50069" FT /label=HMMPfam FT /note="HMMPfam hit to PF01193, RNA polymerase Rpb3/Rpb11 FT dimerisation, score 9.6e-22" FT misc_feature 78576..78923 FT /colour=9 FT /domain="HMMPfam:PF01000;RNA polymerase Rpb3/RpoA insert FT domain;6.3e-56;codon 54-169" FT /id="SpyM50069" FT /label=HMMPfam FT /note="HMMPfam hit to PF01000, RNA polymerase Rpb3/RpoA FT insert domain, score 6.3e-56" FT misc_feature 79122..79325 FT /colour=9 FT /domain="HMMPfam:PF03118;Bacterial RNA polymerase, alpha FT chain C;1.2e-31;codon 236-303" FT /id="SpyM50069" FT /label=HMMPfam FT /note="HMMPfam hit to PF03118, Bacterial RNA polymerase, FT alpha chain C, score 1.2e-31" FT CDS 79370..79756 FT /MGAS10270_orthologue="MGAS10270_Spy0074" FT /MGAS10394_orthologue="M6_Spy0120" FT /MGAS10750_orthologue="MGAS10750_Spy0075" FT /MGAS2096_orthologue="MGAS2096_Spy0074" FT /MGAS315_orthologue="rplQ" FT /MGAS5005_orthologue="M5005_Spy0071" FT /MGAS6180_orthologue="M28_Spy0070" FT /MGAS8232_orthologue="rplQ" FT /MGAS9429_orthologue="MGAS9429_Spy0071" FT /SSI_1_orthologue="SPs0069" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00068.out" FT /gene="rplQ" FT /product="50S ribosomal protein L17" FT /systematic_id="SpyM50070" FT misc_feature 79415..79753 FT /colour=9 FT /domain="HMMPfam:PF01196;Ribosomal protein FT L17;8.5e-62;codon 16-128" FT /id="SpyM50070" FT /label=HMMPfam FT /note="HMMPfam hit to PF01196, Ribosomal protein L17, FT score 8.5e-62" FT misc_feature 79457..79525 FT /colour=8 FT /note="PS01167 Ribosomal protein L17 signature." FT repeat_unit 80266..80280 FT /colour=2 FT /note="direct repeat" FT repeat_region 80280..81349 FT /colour=0 FT /note="IS1239" FT CDS 80380..81369 FT /class="5.1.4" FT /cluster="Spy_40:0000 9" FT /colour=12 FT /fasta_file="fasta/SP_new.tab.seq.00069.out" FT /note="Similar to Streptococcus pyogenes insertion FT sequence IS1239 putative transposase SWALL:Q54534 FT (EMBL:U11799) (326 aa) fasta scores: E(): 1.3e-123, 98.14% FT id in 323 aa" FT /product="insertion sequence IS1239 putative transposase" FT /similarity="fasta; SWALL:Q54534 (EMBL:U11799); FT Streptococcus pyogenes; insertion sequence is1239 putative FT transposase; ; length 326 aa; id=98.14%; ungapped FT id=98.14%; E()=1.3e-123; ; 323 aa overlap; query 1-323 aa; FT subject 1-323 aa" FT /systematic_id="SpyM50071" FT misc_feature 80461..80526 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1555.000, SD 4.48 at aa 28-49, sequence FT RSNREIARLLGKAPQTIHNEIK" FT misc_feature 80887..81324 FT /colour=9 FT /domain="HMMPfam:PF00665;Integrase core FT domain;3.9e-18;codon 170-315" FT /id="SpyM50071" FT /label=HMMPfam FT /note="HMMPfam hit to PF00665, Integrase core domain, FT score 3.9e-18" FT repeat_unit 81352..81366 FT /colour=2 FT /note="direct repeat" FT rRNA 81668..83174 FT /label=16s rRNA FT /note="16s rRNA" FT tRNA 83261..83333 FT /anticodon=(pos:83294..83296,aa:Ala) FT /gene="tRNA-Ala" FT /note="tRNA Ala anticodon TGC, Cove score 73.15" FT /product="transfer RNA-Ala" FT rRNA 83632..86532 FT /label=23s rRNA FT /note="23s rRNA" FT rRNA 86620..86735 FT /label=5s rRNA FT /note="5s rRNA" FT tRNA 86753..86825 FT /anticodon=(pos:86786..86788,aa:Val) FT /gene="tRNA-Val" FT /note="tRNA Val anticodon TAC, Cove score 68.42" FT /product="transfer RNA-Val" FT tRNA 86831..86901 FT /anticodon=(pos:86863..86865,aa:Gly) FT /gene="tRNA-Gly" FT /note="tRNA Gly anticodon TCC, Cove score 69.41" FT /product="transfer RNA-Gly" FT tRNA 86936..87009 FT /anticodon=(pos:86970..86972,aa:Ile) FT /gene="tRNA-Ile" FT /note="tRNA Ile anticodon GAT, Cove score 80.30" FT /product="transfer RNA-Ile" FT tRNA 87032..87103 FT /anticodon=(pos:87065..87067,aa:Glu) FT /gene="tRNA-Glu" FT /note="tRNA Glu anticodon TTC, Cove score 66.12" FT /product="transfer RNA-Glu" FT tRNA 87114..87203 FT /anticodon=(pos:87150..87152,aa:Ser) FT /gene="tRNA-Ser" FT /note="tRNA Ser anticodon TGA, Cove score 37.00" FT /product="transfer RNA-Ser" FT tRNA 87213..87286 FT /anticodon=(pos:87247..87249,aa:Met) FT /gene="tRNA-Met" FT /note="tRNA Met anticodon CAT, Cove score 66.24" FT /product="transfer RNA-Met" FT tRNA 87307..87379 FT /anticodon=(pos:87340..87342,aa:Phe) FT /gene="tRNA-Phe" FT /note="tRNA Phe anticodon GAA, Cove score 64.99" FT /product="transfer RNA-Phe" FT tRNA 87399..87479 FT /anticodon=(pos:87433..87435,aa:Tyr) FT /gene="tRNA-Tyr" FT /note="tRNA Tyr anticodon GTA, Cove score 55.90" FT /product="transfer RNA-Tyr" FT tRNA 87486..87556 FT /anticodon=(pos:87518..87520,aa:Trp) FT /gene="tRNA-Trp" FT /note="tRNA Trp anticodon CCA, Cove score 51.88" FT /product="transfer RNA-Trp" FT tRNA 87568..87640 FT /anticodon=(pos:87601..87603,aa:His) FT /gene="tRNA-His" FT /note="tRNA His anticodon GTG, Cove score 61.82" FT /product="transfer RNA-His" FT tRNA 87649..87720 FT /anticodon=(pos:87681..87683,aa:Gln) FT /gene="tRNA-Gln" FT /note="tRNA Gln anticodon TTG, Cove score 54.64" FT /product="transfer RNA-Gln" FT tRNA 87740..87823 FT /anticodon=(pos:87774..87776,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon CAA, Cove score 62.17" FT /product="transfer RNA-Leu" FT CDS join(88083..88217,88225..88275) FT /class="0.0.0" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01814.out" FT /note="Identical to Streptococcus pyogenes MGAS10394 FT hypothetical protein SWALL:Q5XEA6 (EMBL:CP000003) (61 aa) FT fasta scores: E(): 1.5e-27, 100% id in 61 aa.CDS contains FT a possible frameshift after codon 45" FT /product="hypothetical protein (pseudogene)" FT /pseudo FT /similarity="fasta; SWALL:Q5XEA6 (EMBL:CP000003); FT Streptococcus pyogenes MGAS10394; hypothetical protein; ; FT length 61 aa; id=100%; ungapped id=100%; E()=1.5e-27; ; 61 FT aa overlap; query 1-61 aa; subject 1-61 aa" FT /systematic_id="SpyM50071A" FT CDS join(88691..88753,88757..88879,88883..89218,89222..89470,89470..89529) FT /EC_number="2.7.1.148" FT /class="7.0.0" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01816.out" FT /gene="ispE" FT /note="Similar to Escherichia coli FT 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase ispE FT SWALL:ISPE_ECOLI (SWALL:P62615) (283 aa) fasta scores: FT E(): 1.5e-11, 28.09% id in 267 aa. CDS contains 3 nonsense FT mutations after codons 21, 62 and 174 which are opal, FT ochre and opal respectively, and a frameshift mutation FT after codon 257" FT /product="putative FT 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase FT (pseudogene)" FT /pseudo FT /similarity="fasta; with=UniProt:ISPE_ECOLI (EMBL:B47706); FT Escherichia coli.; ispE; FT 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC FT 2.7.1.148) (CMK) FT (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol FT kinase).; length=283; id 28.090%; ungapped id 31.250%; FT E()=1.5e-11; 267 aa overlap; query 10-265; subject 9-259" FT /systematic_id="SpyM50072" FT misc_feature 88934..89461 FT /colour=9 FT /domain="HMMPfam:PF00288;GHMP kinases putative ATP-binding FT protei;1.2e-23;codon 83-258" FT /id="SpyM50072" FT /label=HMMPfam FT /note="HMMPfam hit to PF00288, GHMP kinases putative FT ATP-binding protei, score 1.2e-23" FT CDS 89598..90041 FT /M1_GAS_orthologue="SPy0092" FT /MGAS10270_orthologue="MGAS10270_Spy0079" FT /MGAS10394_orthologue="M6_Spy0125" FT /MGAS10750_orthologue="MGAS10750_Spy0084" FT /MGAS2096_orthologue="MGAS2096_Spy0080" FT /MGAS315_orthologue="adcR" FT /MGAS5005_orthologue="M5005_Spy0077" FT /MGAS6180_orthologue="M28_Spy0075" FT /MGAS8232_orthologue="adcR" FT /MGAS9429_orthologue="MGAS9429_Spy0077" FT /SSI_1_orthologue="SPs0070" FT /class="6.3.07" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00071.out" FT /product="MarR-family regulatory protein" FT /systematic_id="SpyM50075" FT misc_feature 89703..90020 FT /colour=9 FT /domain="HMMPfam:PF01047;MarR family;5.8e-15;codon 36-141" FT /id="SpyM50075" FT /label=HMMPfam FT /note="HMMPfam hit to PF01047, MarR family, score 5.8e-15" FT misc_feature 89751..89816 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 2008.000, SD 6.03 at aa 52-73, sequence FT LTNTDLAKALNISQAAVTKAIK" FT CDS 90045..90764 FT /M1_GAS_orthologue="SPy0093" FT /MGAS10270_orthologue="MGAS10270_Spy0080" FT /MGAS10394_orthologue="M6_Spy0126" FT /MGAS10750_orthologue="MGAS10750_Spy0085" FT /MGAS2096_orthologue="MGAS2096_Spy0081" FT /MGAS315_orthologue="adcC" FT /MGAS5005_orthologue="M5005_Spy0078" FT /MGAS6180_orthologue="M28_Spy0076" FT /MGAS8232_orthologue="adrC" FT /MGAS9429_orthologue="MGAS9429_Spy0078" FT /SSI_1_orthologue="SPs0071" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00072.out" FT /product="ABC transporter ATP-binding protein" FT /systematic_id="SpyM50076" FT misc_feature 90129..90689 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;1.7e-43;codon FT 29-215" FT /id="SpyM50076" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-43" FT misc_feature 90456..90500 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS 90757..91572 FT /M1_GAS_orthologue="SPy0094" FT /MGAS10270_orthologue="MGAS10270_Spy0081" FT /MGAS10394_orthologue="M6_Spy0127" FT /MGAS10750_orthologue="MGAS10750_Spy0086" FT /MGAS2096_orthologue="MGAS2096_Spy0082" FT /MGAS315_orthologue="adcB" FT /MGAS5005_orthologue="M5005_Spy0079" FT /MGAS6180_orthologue="M28_Spy0077" FT /MGAS8232_orthologue="adrB" FT /MGAS9429_orthologue="MGAS9429_Spy0079" FT /SSI_1_orthologue="SPs0072" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00073.out" FT /product="ABC transporter permease protein" FT /systematic_id="SpyM50077" FT misc_feature 90772..91548 FT /colour=9 FT /domain="HMMPfam:PF00950;ABC 3 transport FT family;1.6e-98;codon 8-266" FT /id="SpyM50077" FT /label=HMMPfam FT /note="HMMPfam hit to PF00950, ABC 3 transport family, FT score 1.6e-98" FT misc_feature join(90793..90855,90916..90984,91012..91071,91156..91224,91282..91350,91411..91479,91489..91548) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="15,35" FT /coord="56,78" FT /coord="88,107" FT /coord="136,158" FT /coord="178,200" FT /coord="221,243" FT /coord="247,266" FT /id="SpyM50077" FT /note="7 probable transmembrane helices predicted for FT SpyM50077 by TMHMM2.0 at aa 15-35, 56-78, 88-107, 136-158, FT 178-200, 221-243 and 247-266" FT /type="TMHMM" FT CDS complement(join(91612..91980,91980..91994)) FT /EC_number="3.6.1.17" FT /M1_GAS_orthologue="SPy0095" FT /MGAS10270_orthologue="MGAS10270_Spy0082" FT /MGAS10394_orthologue="M6_Spy0128" FT /MGAS10750_orthologue="MGAS10750_Spy0087" FT /MGAS2096_orthologue="MGAS2096_Spy0083" FT /MGAS315_orthologue="SpyM3_0072" FT /MGAS5005_orthologue="M5005_Spy0080" FT /MGAS6180_orthologue="M28_Spy0078" FT /MGAS8232_orthologue="spyM18_0095" FT /MGAS9429_orthologue="MGAS9429_Spy0080" FT /SSI_1_orthologue="SPs0073" FT /class="7.0.0" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01821.out" FT /note="CDS contains a frameshift mutation after codon 4. FT Frameshift occurs at a poly T pentamer" FT /product="putative histidine triad (HIT) protein FT (pseudogene)" FT /pseudo FT /systematic_id="SpyM50078" FT misc_feature complement(91684..91986) FT /colour=9 FT /domain="HMMPfam:PF01230;HIT domain;1.4e-05;codon 1-101" FT /id="SpyM50078" FT /label=HMMPfam FT /note="HMMPfam hit to PF01230, HIT domain, score 1.4e-05" FT CDS complement(92045..93301) FT /EC_number="6.1.1.1" FT /M1_GAS_orthologue="SPy0096" FT /MGAS10270_orthologue="MGAS10270_Spy0083" FT /MGAS10394_orthologue="M6_Spy0129" FT /MGAS10750_orthologue="MGAS10750_Spy0088" FT /MGAS2096_orthologue="MGAS2096_Spy0084" FT /MGAS315_orthologue="tyrS" FT /MGAS5005_orthologue="M5005_Spy0081" FT /MGAS6180_orthologue="M28_Spy0079" FT /MGAS8232_orthologue="tyrS" FT /MGAS9429_orthologue="MGAS9429_Spy0081" FT /SSI_1_orthologue="SPs0074" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00075.out" FT /gene="tyrS" FT /product="putative tyrosyl-tRNA synthetase" FT /systematic_id="SpyM50079" FT misc_feature complement(92105..92248) FT /colour=9 FT /domain="HMMPfam:PF01479;S4 domain;6.7e-08;codon 352-399" FT /id="SpyM50079" FT /label=HMMPfam FT /note="HMMPfam hit to PF01479, S4 domain, score 6.7e-08" FT misc_feature complement(92306..92347) FT /colour=8 FT /note="PS00287 Cysteine proteases inhibitors signature." FT misc_feature complement(92333..93226) FT /colour=9 FT /domain="HMMPfam:PF00579;tRNA synthetases class I (W and FT Y);2.5e-107;codon 26-323" FT /id="SpyM50079" FT /label=HMMPfam FT /note="HMMPfam hit to PF00579, tRNA synthetases class I (W FT and Y), score 2.5e-107" FT misc_feature complement(93155..93187) FT /colour=8 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 93405..95705 FT /M1_GAS_orthologue="SPy0097" FT /MGAS10270_orthologue="MGAS10270_Spy0084" FT /MGAS10394_orthologue="M6_Spy0130" FT /MGAS10750_orthologue="MGAS10750_Spy0089" FT /MGAS2096_orthologue="MGAS2096_Spy0085" FT /MGAS315_orthologue="pbp1B" FT /MGAS5005_orthologue="M5005_Spy0082" FT /MGAS6180_orthologue="M28_Spy0080" FT /MGAS8232_orthologue="pbp" FT /MGAS9429_orthologue="MGAS9429_Spy0082" FT /SSI_1_orthologue="SPs0075" FT /class="4.1.9" FT /cluster="Spy_40:0012 3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00076.out" FT /gene="pbp1B" FT /product="putative penicillin-binding protein 1B" FT /systematic_id="SpyM50080" FT misc_feature 93495..93563 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /id="SpyM50080" FT /note="1 probable transmembrane helix predicted for FT SpyM50080 by TMHMM2.0 at aa 13-35" FT /type="TMHMM" FT misc_feature 93645..94166 FT /colour=9 FT /domain="HMMPfam:PF00912;Transglycosylase;6.8e-81;codon FT 63-236" FT /id="SpyM50080" FT /label=HMMPfam FT /note="HMMPfam hit to PF00912, Transglycosylase, score FT 6.8e-81" FT misc_feature 94593..95447 FT /colour=9 FT /domain="HMMPfam:PF00905;Penicillin binding protein FT transpeptid;3.3e-14;codon 379-663" FT /id="SpyM50080" FT /label=HMMPfam FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptid, score 3.3e-14" FT CDS 95969..99535 FT /EC_number="2.7.7.6" FT /M1_GAS_orthologue="SPy0098" FT /MGAS10270_orthologue="MGAS10270_Spy0085" FT /MGAS10394_orthologue="M6_Spy0131" FT /MGAS10750_orthologue="MGAS10750_Spy0090" FT /MGAS2096_orthologue="MGAS2096_Spy0086" FT /MGAS315_orthologue="rpoB" FT /MGAS5005_orthologue="M5005_Spy0083" FT /MGAS6180_orthologue="M28_Spy0081" FT /MGAS8232_orthologue="ropB" FT /SSI_1_orthologue="SPs0076" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00077.out" FT /gene="rpoB" FT /product="DNA-directed RNA polymerase beta chain" FT /systematic_id="SpyM50081" FT misc_feature 96050..97375 FT /colour=9 FT /domain="HMMPfam:PF04563;RNA polymerase beta FT subunit;7.6e-16;codon 28-469" FT /id="SpyM50081" FT /label=HMMPfam FT /note="HMMPfam hit to PF04563, RNA polymerase beta FT subunit, score 7.6e-16" FT misc_feature 96386..96952 FT /colour=9 FT /domain="HMMPfam:PF04561;RNA polymerase Rpb2, FT domain;9e-12;codon 140-328" FT /id="SpyM50081" FT /label=HMMPfam FT /note="HMMPfam hit to PF04561, RNA polymerase Rpb2, FT domain, score 9e-12" FT misc_feature 97376..97594 FT /colour=9 FT /domain="HMMPfam:PF04565;RNA polymerase Rpb2, FT domain;7.1e-41;codon 470-542" FT /id="SpyM50081" FT /label=HMMPfam FT /note="HMMPfam hit to PF04565, RNA polymerase Rpb2, FT domain, score 7.1e-41" FT misc_feature 97997..99163 FT /colour=9 FT /domain="HMMPfam:PF00562;RNA polymerase Rpb2, FT domain;7.7e-246;codon 677-1065" FT /id="SpyM50081" FT /label=HMMPfam FT /note="HMMPfam hit to PF00562, RNA polymerase Rpb2, FT domain, score 7.7e-246" FT misc_feature 98720..98758 FT /colour=8 FT /note="PS01166 RNA polymerases beta chain signature." FT misc_feature 99167..99397 FT /colour=9 FT /domain="HMMPfam:PF04560;RNA polymerase Rpb2, FT domain;3.4e-49;codon 1067-1143" FT /id="SpyM50081" FT /label=HMMPfam FT /note="HMMPfam hit to PF04560, RNA polymerase Rpb2, FT domain, score 3.4e-49" FT CDS 99626..103267 FT /EC_number="2.7.7.6" FT /M1_GAS_orthologue="SPy0099" FT /MGAS10270_orthologue="MGAS10270_Spy0086" FT /MGAS10394_orthologue="M6_Spy0132" FT /MGAS10750_orthologue="MGAS10750_Spy0091" FT /MGAS2096_orthologue="MGAS2096_Spy0087" FT /MGAS315_orthologue="rpoC" FT /MGAS5005_orthologue="M5005_Spy0084" FT /MGAS6180_orthologue="M28_Spy0082" FT /MGAS8232_orthologue="ropC" FT /MGAS9429_orthologue="MGAS9429_Spy0085" FT /SSI_1_orthologue="SPs0077" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00078.out" FT /gene="rpoC" FT /product="DNA-directed RNA polymerase beta' chain" FT /systematic_id="SpyM50082" FT misc_feature 99635..100621 FT /colour=9 FT /domain="HMMPfam:PF04997;RNA polymerase Rpb1, FT domain;7.2e-144;codon 4-332" FT /id="SpyM50082" FT /label=HMMPfam FT /note="HMMPfam hit to PF04997, RNA polymerase Rpb1, FT domain, score 7.2e-144" FT misc_feature 100625..101053 FT /colour=9 FT /domain="HMMPfam:PF00623;RNA polymerase Rpb1, FT domain;1.5e-83;codon 334-476" FT /id="SpyM50082" FT /label=HMMPfam FT /note="HMMPfam hit to PF00623, RNA polymerase Rpb1, FT domain, score 1.5e-83" FT misc_feature 101060..101617 FT /colour=9 FT /domain="HMMPfam:PF04983;RNA polymerase Rpb1, FT domain;4.3e-73;codon 479-664" FT /id="SpyM50082" FT /label=HMMPfam FT /note="HMMPfam hit to PF04983, RNA polymerase Rpb1, FT domain, score 4.3e-73" FT misc_feature 101690..101932 FT /colour=9 FT /domain="HMMPfam:PF05000;RNA polymerase Rpb1, FT domain;2.1e-24;codon 689-769" FT /id="SpyM50082" FT /label=HMMPfam FT /note="HMMPfam hit to PF05000, RNA polymerase Rpb1, FT domain, score 2.1e-24" FT misc_feature 101936..103042 FT /colour=9 FT /domain="HMMPfam:PF04998;RNA polymerase Rpb1, FT domain;1e-67;codon 771-1139" FT /id="SpyM50082" FT /label=HMMPfam FT /note="HMMPfam hit to PF04998, RNA polymerase Rpb1, FT domain, score 1e-67" FT CDS 103419..103784 FT /M1_GAS_orthologue="SPy0100" FT /MGAS10270_orthologue="MGAS10270_Spy0087" FT /MGAS10394_orthologue="M6_Spy0133" FT /MGAS10750_orthologue="MGAS10750_Spy0092" FT /MGAS2096_orthologue="MGAS2096_Spy0088" FT /MGAS315_orthologue="SpyM3_0077" FT /MGAS5005_orthologue="M5005_Spy0085" FT /MGAS6180_orthologue="M28_Spy0083" FT /MGAS8232_orthologue="spyM18_0101" FT /MGAS9429_orthologue="MGAS9429_Spy0086" FT /SSI_1_orthologue="SPs0078" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00079.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50083" FT misc_feature 103419..103781 FT /colour=9 FT /domain="HMMPfam:PF06279;Protein of unknown function FT (DUF1033);5.7e-85;codon 1-121" FT /id="SpyM50083" FT /label=HMMPfam FT /note="HMMPfam hit to PF06279, Protein of unknown function FT (DUF1033), score 5.7e-85" FT CDS 103877..104815 FT /M1_GAS_orthologue="SPy0101" FT /MGAS10270_orthologue="MGAS10270_Spy0088" FT /MGAS10394_orthologue="M6_Spy0134" FT /MGAS10750_orthologue="MGAS10750_Spy0093" FT /MGAS2096_orthologue="MGAS2096_Spy0089" FT /MGAS315_orthologue="comYA" FT /MGAS5005_orthologue="M5005_Spy0086" FT /MGAS6180_orthologue="M28_Spy0084" FT /MGAS8232_orthologue="spyM18_0102" FT /MGAS9429_orthologue="MGAS9429_Spy0087" FT /SSI_1_orthologue="SPs0079" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00080.out" FT /product="putative competence protein" FT /systematic_id="SpyM50084" FT misc_feature 103877..104686 FT /colour=9 FT /domain="HMMPfam:PF00437;Type II/IV secretion system FT protein;1.6e-27;codon 1-270" FT /id="SpyM50084" FT /label=HMMPfam FT /note="HMMPfam hit to PF00437, Type II/IV secretion system FT protein, score 1.6e-27" FT misc_feature 104291..104314 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 104465..104509 FT /colour=8 FT /note="PS00662 Bacterial type II secretion system protein FT E signature." FT CDS 104799..105785 FT /M1_GAS_orthologue="SPy0102" FT /MGAS10270_orthologue="MGAS10270_Spy0089" FT /MGAS10394_orthologue="M6_Spy0135" FT /MGAS10750_orthologue="MGAS10750_Spy0094" FT /MGAS2096_orthologue="MGAS2096_Spy0090" FT /MGAS315_orthologue="comYB" FT /MGAS5005_orthologue="M5005_Spy0087" FT /MGAS6180_orthologue="M28_Spy0085" FT /MGAS8232_orthologue="spyM18_0103" FT /MGAS9429_orthologue="MGAS9429_Spy0088" FT /SSI_1_orthologue="SPs0080" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00081.out" FT /note="Possible alternate translational start site" FT /product="putative competence protein" FT /systematic_id="SpyM50085" FT misc_feature 104799..104879 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.816" FT /colour=3 FT /coord="27,28" FT /id="SpyM50085" FT /note="Signal peptide predicted for SpyM50085 by SignalP FT 2.0 HMM (Signal peptide probability 0.920) with cleavage FT site probability 0.816 between residues 27 and 28" FT /signal="0.920" FT /type="signalp" FT misc_feature 104832..105191 FT /colour=9 FT /domain="HMMPfam:PF00482;Bacterial type II secretion FT system protein F;3.4e-14;codon 12-131" FT /id="SpyM50085" FT /label=HMMPfam FT /note="HMMPfam hit to PF00482, Bacterial type II secretion FT system protein F, score 3.4e-14" FT misc_feature join(105117..105185,105228..105296,105693..105761) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="107,129" FT /coord="144,166" FT /coord="299,321" FT /id="SpyM50085" FT /note="3 probable transmembrane helices predicted for FT SpyM50085 by TMHMM2.0 at aa 107-129, 144-166 and 299-321" FT /type="TMHMM" FT misc_feature 105390..105755 FT /colour=9 FT /domain="HMMPfam:PF00482;Bacterial type II secretion FT system protein F;1.7e-17;codon 198-319" FT /id="SpyM50085" FT /label=HMMPfam FT /note="HMMPfam hit to PF00482, Bacterial type II secretion FT system protein F, score 1.7e-17" FT CDS 105787..106113 FT /M1_GAS_orthologue="SPy0103" FT /MGAS10270_orthologue="MGAS10270_Spy0090" FT /MGAS10394_orthologue="M6_Spy0136" FT /MGAS10750_orthologue="MGAS10750_Spy0095" FT /MGAS2096_orthologue="MGAS2096_Spy0091" FT /MGAS315_orthologue="comYC" FT /MGAS5005_orthologue="M5005_Spy0088" FT /MGAS6180_orthologue="M28_Spy0086" FT /MGAS8232_orthologue="spyM18_0105" FT /MGAS9429_orthologue="MGAS9429_Spy0089" FT /SSI_1_orthologue="SPs0081" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00082.out" FT /gene="comYC" FT /product="putative competence protein" FT /systematic_id="SpyM50086" FT misc_feature 105787..105909 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.534" FT /colour=3 FT /coord="41,42" FT /id="SpyM50086" FT /note="Signal peptide predicted for SpyM50086 by SignalP FT 2.0 HMM (Signal peptide probability 0.995) with cleavage FT site probability 0.534 between residues 41 and 42" FT /signal="0.995" FT /type="signalp" FT misc_feature 105826..105888 FT /colour=8 FT /note="PS00409 Prokaryotic N-terminal methylation site." FT misc_feature 105829..105897 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="15,37" FT /id="SpyM50086" FT /note="1 probable transmembrane helix predicted for FT SpyM50086 by TMHMM2.0 at aa 15-37" FT /type="TMHMM" FT CDS 106088..106516 FT /M1_GAS_orthologue="SPy0104" FT /MGAS10270_orthologue="MGAS10270_Spy0091" FT /MGAS10394_orthologue="M6_Spy0137" FT /MGAS10750_orthologue="MGAS10750_Spy0096" FT /MGAS2096_orthologue="MGAS2096_Spy0092" FT /MGAS315_orthologue="SpyM3_0081" FT /MGAS6180_orthologue="M28_Spy0087" FT /MGAS8232_orthologue="spyM18_0106" FT /MGAS9429_orthologue="MGAS9429_Spy0090" FT /SSI_1_orthologue="SPs0082" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00083.out" FT /product="putative competence protein" FT /systematic_id="SpyM50087" FT misc_feature 106088..106204 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.449" FT /colour=3 FT /coord="39,40" FT /id="SpyM50087" FT /note="Signal peptide predicted for SpyM50087 by SignalP FT 2.0 HMM (Signal peptide probability 0.980) with cleavage FT site probability 0.449 between residues 39 and 40" FT /signal="0.980" FT /type="signalp" FT misc_feature 106115..106183 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="10,32" FT /id="SpyM50087" FT /note="1 probable transmembrane helix predicted for FT SpyM50087 by TMHMM2.0 at aa 10-32" FT /type="TMHMM" FT CDS 106521..106757 FT /M1_GAS_orthologue="SPy0105" FT /MGAS10270_orthologue="MGAS10270_Spy0092" FT /MGAS10394_orthologue="M6_Spy0138" FT /MGAS10750_orthologue="MGAS10750_Spy0097" FT /MGAS2096_orthologue="MGAS2096_Spy0093" FT /MGAS315_orthologue="SpyM3_0082" FT /MGAS5005_orthologue="M5005_Spy0090" FT /MGAS6180_orthologue="M28_Spy0088" FT /MGAS8232_orthologue="spyM18_0107" FT /MGAS9429_orthologue="MGAS9429_Spy0091" FT /SSI_1_orthologue="SPs0083" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00084.out" FT /product="putative exported protein" FT /systematic_id="SpyM50088" FT misc_feature 106521..106589 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.813" FT /colour=3 FT /coord="23,24" FT /id="SpyM50088" FT /note="Signal peptide predicted for SpyM50088 by SignalP FT 2.0 HMM (Signal peptide probability 0.943) with cleavage FT site probability 0.813 between residues 23 and 24" FT /signal="0.943" FT /type="signalp" FT CDS 106750..107184 FT /M1_GAS_orthologue="SPy0106" FT /MGAS10270_orthologue="MGAS10270_Spy0093" FT /MGAS10394_orthologue="M6_Spy0139" FT /MGAS10750_orthologue="MGAS10750_Spy0098" FT /MGAS2096_orthologue="MGAS2096_Spy0094" FT /MGAS315_orthologue="comYD" FT /MGAS5005_orthologue="M5005_Spy0091" FT /MGAS6180_orthologue="M28_Spy0089" FT /MGAS8232_orthologue="spyM18_0108" FT /MGAS9429_orthologue="MGAS9429_Spy0092" FT /SSI_1_orthologue="SPs0084" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00085.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50089" FT misc_feature 106783..106851 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="12,34" FT /id="SpyM50089" FT /note="1 probable transmembrane helix predicted for FT SpyM50089 by TMHMM2.0 at aa 12-34" FT /type="TMHMM" FT CDS 107168..107494 FT /M1_GAS_orthologue="SPy0107" FT /MGAS10270_orthologue="MGAS10270_Spy0094" FT /MGAS10394_orthologue="M6_Spy0140" FT /MGAS10750_orthologue="MGAS10750_Spy0099" FT /MGAS2096_orthologue="MGAS2096_Spy0095" FT /MGAS315_orthologue="SpyM3_0084" FT /MGAS5005_orthologue="M5005_Spy0092" FT /MGAS6180_orthologue="M28_Spy0090" FT /MGAS8232_orthologue="spyM18_0109" FT /MGAS9429_orthologue="MGAS9429_Spy0093" FT /SSI_1_orthologue="SPs0085" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00086.out" FT /product="putative exported protein" FT /systematic_id="SpyM50090" FT misc_feature 107168..107272 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.518" FT /colour=3 FT /coord="35,36" FT /id="SpyM50090" FT /note="Signal peptide predicted for SpyM50090 by SignalP FT 2.0 HMM (Signal peptide probability 0.993) with cleavage FT site probability 0.518 between residues 35 and 36" FT /signal="0.993" FT /type="signalp" FT misc_feature 107195..107263 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="10,32" FT /id="SpyM50090" FT /note="1 probable transmembrane helix predicted for FT SpyM50090 by TMHMM2.0 at aa 10-32" FT /type="TMHMM" FT CDS 107592..108545 FT /M1_GAS_orthologue="SPy0108" FT /MGAS10270_orthologue="MGAS10270_Spy0095" FT /MGAS10394_orthologue="M6_Spy0141" FT /MGAS10750_orthologue="MGAS10750_Spy0100" FT /MGAS2096_orthologue="MGAS2096_Spy0096" FT /MGAS315_orthologue="SpyM3_0085" FT /MGAS5005_orthologue="M5005_Spy0093" FT /MGAS6180_orthologue="M28_Spy0091" FT /MGAS8232_orthologue="spyM18_0110" FT /MGAS9429_orthologue="MGAS9429_Spy0094" FT /SSI_1_orthologue="SPs0086" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00087.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50091" FT CDS 108604..109800 FT /EC_number="2.7.2.1" FT /M1_GAS_orthologue="SPy0109" FT /MGAS10270_orthologue="MGAS10270_Spy0096" FT /MGAS10394_orthologue="M6_Spy0142" FT /MGAS10750_orthologue="MGAS10750_Spy0101" FT /MGAS2096_orthologue="MGAS2096_Spy0097" FT /MGAS315_orthologue="ackA" FT /MGAS5005_orthologue="M5005_Spy0094" FT /MGAS6180_orthologue="M28_Spy0092" FT /MGAS8232_orthologue="spyM18_0111" FT /MGAS9429_orthologue="MGAS9429_Spy0095" FT /SSI_1_orthologue="SPs0087" FT /class="3.3.15" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00088.out" FT /gene="ackA" FT /product="acetate kinase" FT /systematic_id="SpyM50092" FT misc_feature 108610..109770 FT /colour=9 FT /domain="HMMPfam:PF00871;Acetokinase family;7.9e-200;codon FT 3-389" FT /id="SpyM50092" FT /label=HMMPfam FT /note="HMMPfam hit to PF00871, Acetokinase family, score FT 7.9e-200" FT misc_feature 109207..109260 FT /colour=8 FT /note="PS01076 Acetate and butyrate kinases family FT signature 2." FT CDS 109987..110295 FT /M1_GAS_orthologue="SPy0110" FT /MGAS10394_orthologue="M6_Spy0143" FT /MGAS10750_orthologue="MGAS10750_Spy0102" FT /MGAS2096_orthologue="MGAS2096_Spy0098" FT /MGAS315_orthologue="SpyM3_0087" FT /MGAS5005_orthologue="M5005_Spy0095" FT /MGAS6180_orthologue="M28_Spy0093" FT /MGAS8232_orthologue="spyM18_0112" FT /MGAS9429_orthologue="MGAS9429_Spy0096" FT /SSI_1_orthologue="SPs0088" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00089.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50093" FT misc_feature join(110077..110145,110173..110217) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="31,53" FT /coord="63,77" FT /id="SpyM50093" FT /note="2 probable transmembrane helices predicted for FT SpyM50093 by TMHMM2.0 at aa 31-53 and 63-77" FT /type="TMHMM" FT CDS complement(110378..111148) FT /EC_number="1.5.1.2" FT /M1_GAS_orthologue="SPy0112" FT /MGAS10270_orthologue="MGAS10270_Spy0098" FT /MGAS10394_orthologue="M6_Spy0144" FT /MGAS10750_orthologue="MGAS10750_Spy0103" FT /MGAS2096_orthologue="MGAS2096_Spy0099" FT /MGAS315_orthologue="proC" FT /MGAS5005_orthologue="M5005_Spy0096" FT /MGAS6180_orthologue="M28_Spy0094" FT /MGAS8232_orthologue="spyM18_0113" FT /MGAS9429_orthologue="MGAS9429_Spy0097" FT /SSI_1_orthologue="SPs0089" FT /class="3.1.16" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00090.out" FT /gene="proC" FT /product="putative pyrroline-5-carboxylate reductase" FT /systematic_id="SpyM50094" FT misc_feature complement(110426..111148) FT /colour=9 FT /domain="HMMPfam:PF01089;Delta 1-pyrroline-5-carboxylate FT reductase;1.4e-64;codon 1-241" FT /id="SpyM50094" FT /label=HMMPfam FT /note="HMMPfam hit to PF01089, Delta FT 1-pyrroline-5-carboxylate reductase, score 1.4e-64" FT CDS complement(111196..112263) FT /EC_number="3.4.11.7" FT /M1_GAS_orthologue="SPy0115" FT /MGAS10270_orthologue="MGAS10270_Spy0099" FT /MGAS10394_orthologue="M6_Spy0145" FT /MGAS10750_orthologue="MGAS10750_Spy0104" FT /MGAS2096_orthologue="MGAS2096_Spy0100" FT /MGAS315_orthologue="pepA" FT /MGAS5005_orthologue="M5005_Spy0097" FT /MGAS6180_orthologue="M28_Spy0095" FT /MGAS8232_orthologue="spyM18_0115" FT /MGAS9429_orthologue="MGAS9429_Spy0098" FT /SSI_1_orthologue="SPs0090" FT /class="2.1.4" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00091.out" FT /gene="pepA" FT /product="putative glutamyl-aminopeptidase" FT /systematic_id="SpyM50095" FT misc_feature complement(111256..112131) FT /colour=9 FT /domain="HMMPfam:PF05343;M42 glutamyl FT aminopeptidase;1.4e-136;codon 45-336" FT /id="SpyM50095" FT /label=HMMPfam FT /note="HMMPfam hit to PF05343, M42 glutamyl FT aminopeptidase, score 1.4e-136" FT misc_feature complement(112177..112263) FT /colour=8 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(112373..112537) FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.01822.out" FT /note="Identical to Streptococcus pyogenes MGAS10394 FT hypothetical protein. UniProt:Q5XE82 (EMBL:CP000003) (54 FT aa) fasta scores: E()=7.8e-20, 100.000% id in 54 aa" FT /product="hypothetical protein" FT /similarity="fasta; with=UniProt:Q5XE82 (EMBL:CP000003); FT Streptococcus pyogenes MGAS10394.; Hypothetical protein.; FT length=54; id 100.000%; ungapped id 100.000%; E()=7.8e-20; FT 54 aa overlap; query 1-54; subject 1-54" FT /systematic_id="SpyM50095A" FT CDS 112728..113012 FT /M1_GAS_orthologue="SPy0117" FT /MGAS10270_orthologue="MGAS10270_Spy0101" FT /MGAS10394_orthologue="M6_Spy0148" FT /MGAS10750_orthologue="MGAS10750_Spy0106" FT /MGAS2096_orthologue="MGAS2096_Spy0102" FT /MGAS315_orthologue="SpyM3_0090" FT /MGAS5005_orthologue="M5005_Spy0099" FT /MGAS6180_orthologue="M28_Spy0097" FT /MGAS8232_orthologue="spyM18_0117" FT /MGAS9429_orthologue="MGAS9429_Spy0100" FT /SSI_1_orthologue="SPs0092" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00092.out" FT /product="putative exported protein" FT /systematic_id="SpyM50096" FT misc_feature 112728..112805 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.629" FT /colour=3 FT /coord="26,27" FT /id="SpyM50096" FT /note="Signal peptide predicted for SpyM50096 by SignalP FT 2.0 HMM (Signal peptide probability 0.774) with cleavage FT site probability 0.629 between residues 26 and 27" FT /signal="0.774" FT /type="signalp" FT misc_feature 112743..112802 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="6,25" FT /id="SpyM50096" FT /note="1 probable transmembrane helix predicted for FT SpyM50096 by TMHMM2.0 at aa 6-25" FT /type="TMHMM" FT CDS 113009..113326 FT /MGAS10270_orthologue="MGAS10270_Spy0102" FT /MGAS10394_orthologue="M6_Spy0149" FT /MGAS10750_orthologue="MGAS10750_Spy0107" FT /MGAS2096_orthologue="MGAS2096_Spy0103" FT /MGAS315_orthologue="trx.1" FT /MGAS5005_orthologue="M5005_Spy0100" FT /MGAS6180_orthologue="M28_Spy0098" FT /MGAS8232_orthologue="trxA" FT /MGAS9429_orthologue="MGAS9429_Spy0101" FT /SSI_1_orthologue="SPs0093" FT /class="3.2.15" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00093.out" FT /product="putative thioredoxin" FT /systematic_id="SpyM50097" FT misc_feature 113009..113293 FT /colour=9 FT /domain="HMMPfam:PF00085;Thioredoxin;4.8e-06;codon 1-95" FT /id="SpyM50097" FT /label=HMMPfam FT /note="HMMPfam hit to PF00085, Thioredoxin, score 4.8e-06" FT CDS 113344..113970 FT /MGAS10270_orthologue="MGAS10270_Spy0103" FT /MGAS10394_orthologue="M6_Spy0150" FT /MGAS10750_orthologue="MGAS10750_Spy0108" FT /MGAS2096_orthologue="MGAS2096_Spy0104" FT /MGAS315_orthologue="SpyM3_0092" FT /MGAS5005_orthologue="M5005_Spy0101" FT /MGAS6180_orthologue="M28_Spy0099" FT /MGAS8232_orthologue="pheT1" FT /MGAS9429_orthologue="MGAS9429_Spy0102" FT /SSI_1_orthologue="SPs0094" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00094.out" FT /product="putative tRNA-binding protein" FT /systematic_id="SpyM50098" FT misc_feature 113629..113940 FT /colour=9 FT /domain="HMMPfam:PF01588;Putative tRNA binding FT domain;2.6e-24;codon 96-199" FT /id="SpyM50098" FT /label=HMMPfam FT /note="HMMPfam hit to PF01588, Putative tRNA binding FT domain, score 2.6e-24" FT CDS 114121..114516 FT /MGAS10270_orthologue="MGAS10270_Spy0104" FT /MGAS10394_orthologue="M6_Spy0151" FT /MGAS10750_orthologue="MGAS10750_Spy0109" FT /MGAS2096_orthologue="MGAS2096_Spy0105" FT /MGAS315_orthologue="ssb.1" FT /MGAS5005_orthologue="M5005_Spy0102" FT /MGAS6180_orthologue="M28_Spy0100" FT /MGAS8232_orthologue="ssb" FT /MGAS9429_orthologue="MGAS9429_Spy0103" FT /SSI_1_orthologue="SPs0095" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00095.out" FT /product="putative single stranded DNA-binding protein" FT /systematic_id="SpyM50099" FT misc_feature 114124..114429 FT /colour=9 FT /domain="HMMPfam:PF00436;Single-strand binding protein FT family;1.7e-29;codon 2-103" FT /id="SpyM50099" FT /label=HMMPfam FT /note="HMMPfam hit to PF00436, Single-strand binding FT protein family, score 1.7e-29" FT CDS complement(114776..115417) FT /EC_number="2.7.1.76" FT /M1_GAS_orthologue="SPy0121" FT /MGAS10270_orthologue="MGAS10270_Spy0105" FT /MGAS10394_orthologue="M6_Spy0152" FT /MGAS10750_orthologue="MGAS10750_Spy0110" FT /MGAS2096_orthologue="MGAS2096_Spy0106" FT /MGAS315_orthologue="SpyM3_0094" FT /MGAS5005_orthologue="M5005_Spy0103" FT /MGAS6180_orthologue="M28_Spy0101" FT /MGAS8232_orthologue="spyM18_0121" FT /MGAS9429_orthologue="MGAS9429_Spy0104" FT /SSI_1_orthologue="SPs0096" FT /class="3.7.1" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00096.out" FT /product="putative deoxyadenosine kinase protein" FT /systematic_id="SpyM50100" FT misc_feature complement(114803..115261) FT /colour=9 FT /domain="HMMPfam:PF01712;Deoxynucleoside FT kinase;2.3e-52;codon 53-205" FT /id="SpyM50100" FT /label=HMMPfam FT /note="HMMPfam hit to PF01712, Deoxynucleoside kinase, FT score 2.3e-52" FT misc_feature complement(115376..115399) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(115437..116414) FT /M1_GAS_orthologue="SPy0122" FT /MGAS10270_orthologue="MGAS10270_Spy0106" FT /MGAS10394_orthologue="M6_Spy0153" FT /MGAS10750_orthologue="MGAS10750_Spy0111" FT /MGAS2096_orthologue="MGAS2096_Spy0107" FT /MGAS315_orthologue="SpyM3_0095" FT /MGAS5005_orthologue="M5005_Spy0104" FT /MGAS6180_orthologue="M28_Spy0102" FT /MGAS8232_orthologue="spyM18_0122" FT /MGAS9429_orthologue="MGAS9429_Spy0105" FT /SSI_1_orthologue="SPs0097" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00097.out" FT /product="putative tRNA-dihydrouridine synthase" FT /systematic_id="SpyM50101" FT misc_feature complement(115440..116357) FT /colour=9 FT /domain="HMMPfam:PF01207;Dihydrouridine synthase FT (Dus);4.1e-100;codon 20-325" FT /id="SpyM50101" FT /label=HMMPfam FT /note="HMMPfam hit to PF01207, Dihydrouridine synthase FT (Dus), score 4.1e-100" FT misc_feature complement(116055..116111) FT /colour=8 FT /note="PS01136 Uncharacterized protein family UPF0034 FT signature." FT CDS complement(116401..117273) FT /M1_GAS_orthologue="SPy0123" FT /MGAS10270_orthologue="MGAS10270_Spy0107" FT /MGAS10394_orthologue="M6_Spy0154" FT /MGAS10750_orthologue="MGAS10750_Spy0112" FT /MGAS2096_orthologue="MGAS2096_Spy0108" FT /MGAS315_orthologue="SpyM3_0096" FT /MGAS5005_orthologue="M5005_Spy0105" FT /MGAS6180_orthologue="M28_Spy0103" FT /MGAS8232_orthologue="spyM18_0123" FT /MGAS9429_orthologue="MGAS9429_Spy0106" FT /SSI_1_orthologue="SPs0098" FT /class="1.3.1" FT /colour=0 FT /fasta_file="fasta/SP_new.tab.seq.00098.out" FT /product="33 kDa chaperonin (heat shock protein 33 FT homolog)" FT /systematic_id="SpyM50102" FT misc_feature complement(116437..117273) FT /colour=9 FT /domain="HMMPfam:PF01430;Hsp33 protein;1.3e-156;codon FT 1-279" FT /id="SpyM50102" FT /label=HMMPfam FT /note="HMMPfam hit to PF01430, Hsp33 protein, score FT 1.3e-156" FT CDS complement(117399..118934) FT /M1_GAS_orthologue="SPy0124" FT /MGAS10270_orthologue="MGAS10270_Spy0108" FT /MGAS10394_orthologue="M6_Spy0156" FT /MGAS10750_orthologue="MGAS10750_Spy0113" FT /MGAS2096_orthologue="MGAS2096_Spy0109" FT /MGAS315_orthologue="nra" FT /MGAS5005_orthologue="M5005_Spy0106" FT /MGAS6180_orthologue="M28_Spy0104" FT /MGAS9429_orthologue="MGAS9429_Spy0107" FT /SSI_1_orthologue="SPs0099" FT /class="6.5.0" FT /cluster="Spy_40:0020 2" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00099.out" FT /gene="rofA" FT /product="RofA transcriptional regulator" FT /systematic_id="SpyM50103" FT misc_feature complement(117834..118622) FT /colour=9 FT /domain="HMMPfam:PF07003;RofA transcriptional FT regulator;1.5e-166;codon 105-367" FT /id="SpyM50103" FT /label=HMMPfam FT /note="HMMPfam hit to PF07003, RofA transcriptional FT regulator, score 1.5e-166" FT misc_feature complement(118761..118826) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1169.000, SD 3.17 at aa 37-58, sequence FT IIFSHVAKQTGLTAVQLKYYCK" FT CDS 119366..120937 FT /MGAS8232_orthologue="cbp" FT /class="4.1.8" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00100.out" FT /note="CDS contains a putative sortase processing motif FT (VPXTG) after codon 486" FT /product="putative surface-anchored protein" FT /systematic_id="SpyM50104" FT misc_feature 119366..119500 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.785" FT /colour=3 FT /coord="45,46" FT /id="SpyM50104" FT /note="Signal peptide predicted for SpyM50104 by SignalP FT 2.0 HMM (Signal peptide probability 0.998) with cleavage FT site probability 0.785 between residues 45 and 46" FT /signal="0.998" FT /type="signalp" FT misc_feature join(119426..119494,120854..120913) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /coord="497,516" FT /id="SpyM50104" FT /note="2 probable transmembrane helices predicted for FT SpyM50104 by TMHMM2.0 at aa 21-43 and 497-516" FT /type="TMHMM" FT misc_feature 119579..119776 FT /colour=9 FT /domain="HMMPfam:PF05738;Cna protein B-type FT domain;6.3e-09;codon 72-137" FT /id="SpyM50104" FT /label=HMMPfam FT /note="HMMPfam hit to PF05738, Cna protein B-type domain, FT score 6.3e-09" FT CDS 120930..121451 FT /MGAS2096_orthologue="MGAS2096_Spy0114" FT /MGAS315_orthologue="SpyM3_0099" FT /MGAS5005_orthologue="M5005_Spy0108" FT /MGAS6180_orthologue="M28_Spy0108" FT /MGAS8232_orthologue="lepA" FT /MGAS9429_orthologue="MGAS9429_Spy0112" FT /SSI_1_orthologue="SPs0101" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00101.out" FT /product="putative signal peptidase" FT /systematic_id="SpyM50105" FT misc_feature 120990..121058 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /id="SpyM50105" FT /note="1 probable transmembrane helix predicted for FT SpyM50105 by TMHMM2.0 at aa 21-43" FT /type="TMHMM" FT CDS 121458..122516 FT /M1_GAS_orthologue="SPy0128" FT /MGAS2096_orthologue="MGAS2096_Spy0115" FT /MGAS315_orthologue="SpyM3_0100" FT /MGAS5005_orthologue="M5005_Spy0109" FT /MGAS6180_orthologue="M28_Spy0109" FT /MGAS8232_orthologue="spyM18_0128" FT /MGAS9429_orthologue="MGAS9429_Spy0113" FT /SSI_1_orthologue="SPs0102" FT /class="4.1.8" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00102.out" FT /note="CDS contains a putative sortase processing motif FT (QVXTG) after codon 319" FT /product="putative surface-anchored protein" FT /systematic_id="SpyM50106" FT misc_feature 121458..121556 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.993" FT /colour=3 FT /coord="33,34" FT /id="SpyM50106" FT /note="Signal peptide predicted for SpyM50106 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.993 between residues 33 and 34" FT /signal="1.000" FT /type="signalp" FT misc_feature 121563..121586 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 122427..122495 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="324,346" FT /id="SpyM50106" FT /note="1 probable transmembrane helix predicted for FT SpyM50106 by TMHMM2.0 at aa 324-346" FT /type="TMHMM" FT CDS 122517..123257 FT /M1_GAS_orthologue="SPy0129" FT /MGAS2096_orthologue="MGAS2096_Spy0116" FT /MGAS315_orthologue="SpyM3_0101" FT /MGAS5005_orthologue="M5005_Spy0110" FT /MGAS6180_orthologue="M28_Spy0110" FT /MGAS8232_orthologue="spyM18_0129" FT /MGAS9429_orthologue="MGAS9429_Spy0114" FT /SSI_1_orthologue="SPs0103" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.01808.out" FT /gene="srtB" FT /note="Possible alternate translational start site" FT /product="sortase B" FT /systematic_id="SpyM50107" FT misc_feature 122577..122645 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /id="SpyM50107" FT /note="1 probable transmembrane helix predicted for FT SpyM50107 by TMHMM2.0 at aa 21-43" FT /type="TMHMM" FT misc_feature 122700..123248 FT /colour=9 FT /domain="HMMPfam:PF07170;Sortase B;1.6e-126;codon 62-244" FT /id="SpyM50107" FT /label=HMMPfam FT /note="HMMPfam hit to PF07170, Sortase B, score 1.6e-126" FT CDS 123274..123861 FT /M1_GAS_orthologue="SPy0130" FT /MGAS2096_orthologue="MGAS2096_Spy0117" FT /MGAS315_orthologue="SpyM3_0102" FT /MGAS5005_orthologue="M5005_Spy0111" FT /MGAS6180_orthologue="M28_Spy0111" FT /MGAS8232_orthologue="spyM18_0130" FT /MGAS9429_orthologue="MGAS9429_Spy0115" FT /SSI_1_orthologue="SPs0104" FT /class="" FT /class="4.1.8" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00104.out" FT /fasta_file="fasta/SP_new.tab.seq.00102.out" FT /note="CDS contains a putative sortase processing motif FT (LPXAG) after codon 161" FT /product="putative surface-anchored protein" FT /systematic_id="SpyM50106" FT misc_feature 123274..123351 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.985" FT /colour=3 FT /coord="26,27" FT /id="SpyM50108" FT /note="Signal peptide predicted for SpyM50108 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.985 between residues 26 and 27" FT /signal="1.000" FT /type="signalp" FT misc_feature join(123292..123351,123784..123837) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /coord="171,188" FT /id="SpyM50108" FT /note="2 probable transmembrane helices predicted for FT SpyM50108 by TMHMM2.0 at aa 7-26 and 171-188" FT /type="TMHMM" FT CDS complement(124021..125226) FT /MGAS10270_orthologue="MGAS10270_Spy1411" FT /MGAS2096_orthologue="MGAS2096_Spy0118" FT /MGAS315_orthologue="SpyM3_0103" FT /MGAS6180_orthologue="M28_Spy0112" FT /MGAS8232_orthologue="spyM18_0131" FT /MGAS9429_orthologue="MGAS9429_Spy0116" FT /class="6.3.02" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00105.out" FT /product="AraC family regulatory protein" FT /systematic_id="SpyM50109" FT misc_feature complement(124042..124173) FT /colour=9 FT /domain="HMMPfam:PF00165;Bacterial regulatory FT helix-turn-helix protei;2.6e-06;codon 363-406" FT /id="SpyM50109" FT /label=HMMPfam FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix protei, score 2.6e-06" FT misc_feature complement(124189..124329) FT /colour=9 FT /domain="HMMPfam:PF00165;Bacterial regulatory FT helix-turn-helix protei;2.5e-08;codon 311-357" FT /id="SpyM50109" FT /label=HMMPfam FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix protei, score 2.5e-08" FT misc_feature complement(124225..124290) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1574.000, SD 4.55 at aa 324-345, sequence FT LKVSDIAKRLYVSESHLRSVFK" FT CDS 125608..127698 FT /MGAS10394_orthologue="M6_Spy0157" FT /MGAS315_orthologue="SpyM3_0104" FT /MGAS8232_orthologue="prtF2l" FT /SSI_1_orthologue="SPs0106" FT /class="4.1.8" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00106.out" FT /note="CDS contains a putative sortase processing motif FT (LPXTG) after codon 657" FT /product="protein F2 like fibronectin-binding protein" FT /systematic_id="SpyM50110" FT misc_feature 125608..125718 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.905" FT /colour=3 FT /coord="37,38" FT /id="SpyM50110" FT /note="Signal peptide predicted for SpyM50110 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.905 between residues 37 and 38" FT /signal="1.000" FT /type="signalp" FT misc_feature join(125641..125709,127609..127668) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="12,34" FT /coord="668,687" FT /id="SpyM50110" FT /note="2 probable transmembrane helices predicted for FT SpyM50110 by TMHMM2.0 at aa 12-34 and 668-687" FT /type="TMHMM" FT misc_feature 126901..127038 FT /colour=9 FT /domain="HMMPfam:PF02986;Fibronectin binding FT repeat;0.43;codon 432-477" FT /id="SpyM50110" FT /label=HMMPfam FT /note="HMMPfam hit to PF02986, Fibronectin binding repeat, FT score 0.43" FT misc_feature 127039..127239 FT /colour=9 FT /domain="HMMPfam:PF05738;Cna protein B-type FT domain;1.8e-18;codon 478-544" FT /id="SpyM50110" FT /label=HMMPfam FT /note="HMMPfam hit to PF05738, Cna protein B-type domain, FT score 1.8e-18" FT misc_feature 127303..127407 FT /colour=9 FT /domain="HMMPfam:PF02986;Fibronectin binding FT repeat;0.00021;codon 566-600" FT /id="SpyM50110" FT /label=HMMPfam FT /note="HMMPfam hit to PF02986, Fibronectin binding repeat, FT score 0.00021" FT misc_feature 127411..127524 FT /colour=9 FT /domain="HMMPfam:PF02986;Fibronectin binding FT repeat;1e-19;codon 602-639" FT /id="SpyM50110" FT /label=HMMPfam FT /note="HMMPfam hit to PF02986, Fibronectin binding repeat, FT score 1e-19" FT misc_feature 127579..127596 FT /colour=8 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT CDS complement(127964..128629) FT /M1_GAS_orthologue="SPy0136" FT /MGAS10270_orthologue="MGAS10270_Spy0118" FT /MGAS10394_orthologue="M6_Spy0162" FT /MGAS10750_orthologue="MGAS10750_Spy0121" FT /MGAS2096_orthologue="MGAS2096_Spy0120" FT /MGAS315_orthologue="SpyM3_0105" FT /MGAS5005_orthologue="M5005_Spy0115" FT /MGAS8232_orthologue="spyM18_0133" FT /MGAS9429_orthologue="MGAS9429_Spy0118" FT /SSI_1_orthologue="SPs0107" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00107.out" FT /product="putative exported protein" FT /systematic_id="SpyM50111" FT misc_feature complement(128549..128629) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.794" FT /colour=3 FT /coord="27,28" FT /id="SpyM50111" FT /note="Signal peptide predicted for SpyM50111 by SignalP FT 2.0 HMM (Signal peptide probability 0.988) with cleavage FT site probability 0.794 between residues 27 and 28" FT /signal="0.988" FT /type="signalp" FT CDS 128982..130388 FT /M1_GAS_orthologue="SPy0137" FT /MGAS10270_orthologue="MGAS10270_Spy0119" FT /MGAS10394_orthologue="M6_Spy0163" FT /MGAS10750_orthologue="MGAS10750_Spy0122" FT /MGAS2096_orthologue="MGAS2096_Spy0121" FT /MGAS315_orthologue="atoE" FT /MGAS5005_orthologue="M5005_Spy0116" FT /MGAS6180_orthologue="M28_Spy0115" FT /MGAS8232_orthologue="spyM18_0134" FT /MGAS9429_orthologue="MGAS9429_Spy0119" FT /SSI_1_orthologue="SPs0108" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00108.out" FT /product="putative short-chain fatty acids transporter" FT /systematic_id="SpyM50112" FT misc_feature 128982..129131 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.610" FT /colour=3 FT /coord="50,51" FT /id="SpyM50112" FT /note="Signal peptide predicted for SpyM50112 by SignalP FT 2.0 HMM (Signal peptide probability 0.809) with cleavage FT site probability 0.610 between residues 50 and 51" FT /signal="0.809" FT /type="signalp" FT misc_feature 128988..130385 FT /colour=9 FT /domain="HMMPfam:PF02667;Short chain fatty acid FT transporter;1.1e-47;codon 3-468" FT /id="SpyM50112" FT /label=HMMPfam FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter, score 1.1e-47" FT misc_feature join(129042..129110,129174..129242,129303..129371,129594..129662,129789..129857,129978..130046,130065..130133,130314..130382) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /coord="65,87" FT /coord="108,130" FT /coord="205,227" FT /coord="270,292" FT /coord="333,355" FT /coord="362,384" FT /coord="445,467" FT /id="SpyM50112" FT /note="8 probable transmembrane helices predicted for FT SpyM50112 by TMHMM2.0 at aa 21-43, 65-87, 108-130, FT 205-227, 270-292, 333-355, 362-384 and 445-467" FT /type="TMHMM" FT CDS complement(130457..131368) FT /MGAS10270_orthologue="MGAS10270_Spy0120" FT /MGAS10750_orthologue="MGAS10750_Spy0123" FT /MGAS2096_orthologue="MGAS2096_Spy0122" FT /MGAS315_orthologue="SpyM3_0107" FT /MGAS6180_orthologue="M28_Spy0116" FT /MGAS8232_orthologue="spyM18_0135" FT /MGAS9429_orthologue="MGAS9429_Spy0120" FT /SSI_1_orthologue="SPs0109" FT /class="6.3.06" FT /cluster="Spy_40:0021 2" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00109.out" FT /product="LysR family regulatory protein" FT /systematic_id="SpyM50113" FT misc_feature complement(130472..131107) FT /colour=9 FT /domain="HMMPfam:PF03466;LysR substrate binding FT domain;3.8e-11;codon 88-299" FT /id="SpyM50113" FT /label=HMMPfam FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 3.8e-11" FT misc_feature complement(130742..130774) FT /colour=8 FT /note="PS00284 Serpins signature." FT misc_feature complement(131177..131362) FT /colour=9 FT /domain="HMMPfam:PF00126;Bacterial regulatory FT helix-turn-helix;1e-13;codon 3-64" FT /id="SpyM50113" FT /label=HMMPfam FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix, score 1e-13" FT misc_feature complement(131225..131317) FT /colour=8 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(131255..131320) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1880.000, SD 5.59 at aa 17-38, sequence FT FNLTKAAQKSHISQPALSSYIK" FT CDS 131489..132673 FT /M1_GAS_orthologue="SPy0140" FT /MGAS10270_orthologue="MGAS10270_Spy0121" FT /MGAS10394_orthologue="M6_Spy0166" FT /MGAS10750_orthologue="MGAS10750_Spy0124" FT /MGAS2096_orthologue="MGAS2096_Spy0123" FT /MGAS315_orthologue="SpyM3_0108" FT /MGAS5005_orthologue="M5005_Spy0119" FT /MGAS6180_orthologue="M28_Spy0117" FT /MGAS8232_orthologue="spyM18_0136" FT /MGAS9429_orthologue="MGAS9429_Spy0121" FT /SSI_1_orthologue="SPs0110" FT /class="3.4.3" FT /cluster="Spy_40:0022 2" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00110.out" FT /gene="atoB1" FT /note="Similar to SpyM50447, 64.872% identity (64.872% FT ungapped) in 390 aa overlap" FT /product="acetyl-CoA acetyltransferase 1" FT /systematic_id="SpyM50114" FT misc_feature 131492..132283 FT /colour=9 FT /domain="HMMPfam:PF00108;Thiolase, N-terminal FT domain;2.1e-151;codon 2-265" FT /id="SpyM50114" FT /label=HMMPfam FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal FT domain, score 2.1e-151" FT misc_feature 132302..132670 FT /colour=9 FT /domain="HMMPfam:PF02803;Thiolase, C-terminal FT domain;1.1e-74;codon 272-394" FT /id="SpyM50114" FT /label=HMMPfam FT /note="HMMPfam hit to PF02803, Thiolase, C-terminal FT domain, score 1.1e-74" FT misc_feature 132509..132559 FT /colour=8 FT /note="PS00737 Thiolases signature 2." FT misc_feature 132614..132655 FT /colour=8 FT /note="PS00099 Thiolases active site." FT CDS 132685..133344 FT /M1_GAS_orthologue="SPy0141" FT /MGAS10270_orthologue="MGAS10270_Spy0122" FT /MGAS10394_orthologue="M6_Spy0167" FT /MGAS10750_orthologue="MGAS10750_Spy0125" FT /MGAS2096_orthologue="MGAS2096_Spy0124" FT /MGAS315_orthologue="atoD.2" FT /MGAS5005_orthologue="M5005_Spy0120" FT /MGAS6180_orthologue="M28_Spy0118" FT /MGAS8232_orthologue="spyM18_0137" FT /MGAS9429_orthologue="MGAS9429_Spy0122" FT /SSI_1_orthologue="SPs0111" FT /class="3.4.3" FT /cluster="Spy_40:0023 2" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00111.out" FT /gene="atoD1" FT /note="Similar to SpyM50446, 74.057% identity (74.057% FT ungapped) in 212 aa overlap" FT /product="acetate CoA-transferase alpha subunit 1" FT /systematic_id="SpyM50115" FT misc_feature 132700..133335 FT /colour=9 FT /domain="HMMPfam:PF01144;Coenzyme A FT transferase;3.5e-82;codon 6-217" FT /id="SpyM50115" FT /label=HMMPfam FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 3.5e-82" FT misc_feature 132736..132783 FT /colour=8 FT /note="PS01273 CoA transferases signature 1." FT CDS 133347..133994 FT /M1_GAS_orthologue="SPy0142" FT /MGAS10270_orthologue="MGAS10270_Spy0123" FT /MGAS10394_orthologue="M6_Spy0168" FT /MGAS10750_orthologue="MGAS10750_Spy0126" FT /MGAS2096_orthologue="MGAS2096_Spy0125" FT /MGAS315_orthologue="SpyM3_0110" FT /MGAS5005_orthologue="M5005_Spy0121" FT /MGAS6180_orthologue="M28_Spy0119" FT /MGAS8232_orthologue="spyM18_0138" FT /MGAS9429_orthologue="MGAS9429_Spy0123" FT /SSI_1_orthologue="SPs0112" FT /class="3.4.3" FT /cluster="Spy_40:0024 2" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00112.out" FT /gene="atoA1" FT /note="Similar to SpyM50445, 68.571% identity (68.900% FT ungapped) in 210 aa overlap" FT /product="acetate CoA-transferase beta subunit 1" FT /systematic_id="SpyM50116" FT misc_feature 133377..133961 FT /colour=9 FT /domain="HMMPfam:PF01144;Coenzyme A FT transferase;3.6e-45;codon 11-205" FT /id="SpyM50116" FT /label=HMMPfam FT /note="HMMPfam hit to PF01144, Coenzyme A transferase, FT score 3.6e-45" FT misc_feature 133494..133520 FT /colour=8 FT /note="PS01274 CoA transferases signature 2." FT CDS complement(134116..134796) FT /M1_GAS_orthologue="SPy0144" FT /MGAS10270_orthologue="MGAS10270_Spy0124" FT /MGAS10394_orthologue="M6_Spy0169" FT /MGAS10750_orthologue="MGAS10750_Spy0127" FT /MGAS2096_orthologue="MGAS2096_Spy0127" FT /MGAS315_orthologue="SpyM3_0111" FT /MGAS5005_orthologue="M5005_Spy0122" FT /MGAS6180_orthologue="M28_Spy0120" FT /MGAS8232_orthologue="spyM18_0140" FT /MGAS9429_orthologue="MGAS9429_Spy0124" FT /SSI_1_orthologue="SPs0113" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00113.out" FT /product="putative DNA-binding protein" FT /systematic_id="SpyM50117" FT misc_feature complement(134137..134202) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1700.000, SD 4.98 at aa 199-220, sequence FT GAVSKVADILCISEPSVYRYLK" FT CDS 134970..135335 FT /M1_GAS_orthologue="SPy0145" FT /MGAS10270_orthologue="MGAS10270_Spy0125" FT /MGAS10394_orthologue="M6_Spy0170" FT /MGAS10750_orthologue="MGAS10750_Spy0128" FT /MGAS2096_orthologue="MGAS2096_Spy0128" FT /MGAS315_orthologue="SpyM3_0112" FT /MGAS5005_orthologue="M5005_Spy0123" FT /MGAS6180_orthologue="M28_Spy0121" FT /MGAS8232_orthologue="spyM18_0141" FT /MGAS9429_orthologue="MGAS9429_Spy0125" FT /SSI_1_orthologue="SPs0114" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00114.out" FT /product="Endoribonuclease L-PSP family protein" FT /systematic_id="SpyM50118" FT misc_feature 134970..135323 FT /colour=9 FT /domain="HMMPfam:PF01042;Endoribonuclease FT L-PSP;3.3e-37;codon 1-118" FT /id="SpyM50118" FT /label=HMMPfam FT /note="HMMPfam hit to PF01042, Endoribonuclease L-PSP, FT score 3.3e-37" FT CDS 135372..136391 FT /M1_GAS_orthologue="SPy0146" FT /MGAS10270_orthologue="MGAS10270_Spy0126" FT /MGAS10394_orthologue="M6_Spy0171" FT /MGAS10750_orthologue="MGAS10750_Spy0129" FT /MGAS2096_orthologue="MGAS2096_Spy0129" FT /MGAS315_orthologue="SpyM3_0113" FT /MGAS5005_orthologue="M5005_Spy0124" FT /MGAS6180_orthologue="M28_Spy0122" FT /MGAS8232_orthologue="spyM18_0142" FT /MGAS9429_orthologue="MGAS9429_Spy0126" FT /SSI_1_orthologue="SPs0115" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00115.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50119" FT misc_feature 135372..135476 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.270" FT /colour=3 FT /coord="35,36" FT /id="SpyM50119" FT /note="Signal peptide predicted for SpyM50119 by SignalP FT 2.0 HMM (Signal peptide probability 0.923) with cleavage FT site probability 0.270 between residues 35 and 36" FT /signal="0.923" FT /type="signalp" FT misc_feature join(135381..135437,135450..135503,135561..135629,135648..135716,135759..135827,135864..135932,135975..136043,136131..136190,136275..136343) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="4,22" FT /coord="27,44" FT /coord="64,86" FT /coord="93,115" FT /coord="130,152" FT /coord="165,187" FT /coord="202,224" FT /coord="254,273" FT /coord="302,324" FT /id="SpyM50119" FT /note="9 probable transmembrane helices predicted for FT SpyM50119 by TMHMM2.0 at aa 4-22, 27-44, 64-86, 93-115, FT 130-152, 165-187, 202-224, 254-273 and 302-324" FT /type="TMHMM" FT CDS 136840..137163 FT /M1_GAS_orthologue="SPy0147" FT /MGAS10270_orthologue="MGAS10270_Spy0127" FT /MGAS10394_orthologue="M6_Spy0172" FT /MGAS10750_orthologue="MGAS10750_Spy0130" FT /MGAS2096_orthologue="MGAS2096_Spy0130" FT /MGAS315_orthologue="SpyM3_0114" FT /MGAS5005_orthologue="M5005_Spy0125" FT /MGAS6180_orthologue="M28_Spy0123" FT /MGAS8232_orthologue="spyM18_0143" FT /MGAS9429_orthologue="MGAS9429_Spy0127" FT /SSI_1_orthologue="SPs0116" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00116.out" FT /product="hypothetical protein" FT /systematic_id="SpyM50120" FT CDS 137153..139153 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0148" FT /MGAS10270_orthologue="MGAS10270_Spy0128" FT /MGAS10394_orthologue="M6_Spy0173" FT /MGAS10750_orthologue="MGAS10750_Spy0131" FT /MGAS2096_orthologue="MGAS2096_Spy0131" FT /MGAS315_orthologue="ntpI" FT /MGAS5005_orthologue="M5005_Spy0126" FT /MGAS6180_orthologue="M28_Spy0124" FT /MGAS8232_orthologue="spyM18_0144" FT /MGAS9429_orthologue="MGAS9429_Spy0128" FT /SSI_1_orthologue="SPs0117" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00117.out" FT /gene="ntpI" FT /product="V-type sodium ATP synthase subunit I" FT /systematic_id="SpyM50121" FT misc_feature 137216..139105 FT /colour=9 FT /domain="HMMPfam:PF01496;V-type ATPase 116kDa subunit FT family;3e-18;codon 22-651" FT /id="SpyM50121" FT /label=HMMPfam FT /note="HMMPfam hit to PF01496, V-type ATPase 116kDa FT subunit family, score 3e-18" FT misc_feature join(138320..138388,138407..138475,138518..138586,138611..138679,138707..138775,138788..138856,138866..138934,138953..139021) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="390,412" FT /coord="419,441" FT /coord="456,478" FT /coord="487,509" FT /coord="519,541" FT /coord="546,568" FT /coord="572,594" FT /coord="601,623" FT /id="SpyM50121" FT /note="8 probable transmembrane helices predicted for FT SpyM50121 by TMHMM2.0 at aa 390-412, 419-441, 456-478, FT 487-509, 519-541, 546-568, 572-594 and 601-623" FT /type="TMHMM" FT CDS 139155..139634 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0149" FT /MGAS10270_orthologue="MGAS10270_Spy0129" FT /MGAS10394_orthologue="M6_Spy0174" FT /MGAS10750_orthologue="MGAS10750_Spy0132" FT /MGAS2096_orthologue="MGAS2096_Spy0132" FT /MGAS315_orthologue="ntpK" FT /MGAS5005_orthologue="M5005_Spy0127" FT /MGAS6180_orthologue="M28_Spy0125" FT /MGAS8232_orthologue="spyM18_0145" FT /MGAS9429_orthologue="MGAS9429_Spy0129" FT /SSI_1_orthologue="SPs0118" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00118.out" FT /gene="ntpK" FT /product="V-type sodium ATP synthase subunit K" FT /systematic_id="SpyM50122" FT misc_feature 139155..139259 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.548" FT /colour=3 FT /coord="35,36" FT /id="SpyM50122" FT /note="Signal peptide predicted for SpyM50122 by SignalP FT 2.0 HMM (Signal peptide probability 0.933) with cleavage FT site probability 0.548 between residues 35 and 36" FT /signal="0.933" FT /type="signalp" FT misc_feature join(139197..139265,139326..139394,139422..139481,139551..139619) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="15,37" FT /coord="58,80" FT /coord="90,109" FT /coord="133,155" FT /id="SpyM50122" FT /note="4 probable transmembrane helices predicted for FT SpyM50122 by TMHMM2.0 at aa 15-37, 58-80, 90-109 and FT 133-155" FT /type="TMHMM" FT misc_feature 139200..139397 FT /colour=9 FT /domain="HMMPfam:PF00137;ATP synthase subunit FT C;6.5e-05;codon 16-81" FT /id="SpyM50122" FT /label=HMMPfam FT /note="HMMPfam hit to PF00137, ATP synthase subunit C, FT score 6.5e-05" FT misc_feature 139428..139625 FT /colour=9 FT /domain="HMMPfam:PF00137;ATP synthase subunit FT C;6.2e-09;codon 92-157" FT /id="SpyM50122" FT /label=HMMPfam FT /note="HMMPfam hit to PF00137, ATP synthase subunit C, FT score 6.2e-09" FT CDS 139702..140286 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0150" FT /MGAS10270_orthologue="MGAS10270_Spy0130" FT /MGAS10394_orthologue="M6_Spy0175" FT /MGAS10750_orthologue="MGAS10750_Spy0133" FT /MGAS2096_orthologue="MGAS2096_Spy0133" FT /MGAS315_orthologue="ntpE" FT /MGAS5005_orthologue="M5005_Spy0128" FT /MGAS6180_orthologue="M28_Spy0126" FT /MGAS8232_orthologue="spyM18_0146" FT /MGAS9429_orthologue="MGAS9429_Spy0130" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00119.out" FT /gene="ntpE" FT /product="V-type sodium ATP synthase subunit E" FT /systematic_id="SpyM50123" FT misc_feature 139852..139917 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 980.000, SD 2.52 at aa 51-72, sequence FT KELKALEQQFQVAQQQLKNQER" FT CDS 140302..141300 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0151" FT /MGAS10270_orthologue="MGAS10270_Spy0131" FT /MGAS10394_orthologue="M6_Spy0176" FT /MGAS10750_orthologue="MGAS10750_Spy0134" FT /MGAS2096_orthologue="MGAS2096_Spy0134" FT /MGAS315_orthologue="ntpC" FT /MGAS5005_orthologue="M5005_Spy0129" FT /MGAS6180_orthologue="M28_Spy0127" FT /MGAS8232_orthologue="spyM18_0147" FT /MGAS9429_orthologue="MGAS9429_Spy0131" FT /SSI_1_orthologue="SPs0120" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00120.out" FT /gene="ntpC" FT /product="V-type sodium ATP synthase subunit C" FT /systematic_id="SpyM50124" FT misc_feature 140320..141288 FT /colour=9 FT /domain="HMMPfam:PF01992;ATP synthase (C/AC39) FT subunit;9.2e-09;codon 7-329" FT /id="SpyM50124" FT /label=HMMPfam FT /note="HMMPfam hit to PF01992, ATP synthase (C/AC39) FT subunit, score 9.2e-09" FT CDS 141297..141617 FT /EC_number="3.6.3.15" FT /MGAS10270_orthologue="MGAS10270_Spy0132" FT /MGAS10394_orthologue="M6_Spy0177" FT /MGAS10750_orthologue="MGAS10750_Spy0135" FT /MGAS2096_orthologue="MGAS2096_Spy0135" FT /MGAS315_orthologue="ntpG" FT /MGAS5005_orthologue="M5005_Spy0130" FT /MGAS6180_orthologue="M28_Spy0128" FT /MGAS8232_orthologue="spyM18_0148" FT /MGAS9429_orthologue="MGAS9429_Spy0132" FT /SSI_1_orthologue="SPs0121" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00121.out" FT /product="V-type sodium ATP synthase subunit F" FT /systematic_id="SpyM50125" FT misc_feature 141318..141584 FT /colour=9 FT /domain="HMMPfam:PF01990;ATP synthase (F/14-kDa) FT subunit;2.5e-07;codon 8-96" FT /id="SpyM50125" FT /label=HMMPfam FT /note="HMMPfam hit to PF01990, ATP synthase (F/14-kDa) FT subunit, score 2.5e-07" FT CDS 141818..143593 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0154" FT /MGAS10270_orthologue="MGAS10270_Spy0133" FT /MGAS10394_orthologue="M6_Spy0178" FT /MGAS10750_orthologue="MGAS10750_Spy0136" FT /MGAS2096_orthologue="MGAS2096_Spy0136" FT /MGAS315_orthologue="ntpA" FT /MGAS5005_orthologue="M5005_Spy0131" FT /MGAS6180_orthologue="M28_Spy0129" FT /MGAS8232_orthologue="spyM18_0150" FT /MGAS9429_orthologue="MGAS9429_Spy0133" FT /SSI_1_orthologue="SPs0122" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00122.out" FT /gene="ntpA" FT /product="V-type sodium ATP synthase subunit A" FT /systematic_id="SpyM50126" FT misc_feature 141833..142021 FT /colour=9 FT /domain="HMMPfam:PF02874;ATP synthase alpha/beta family, FT beta-ba;1e-13;codon 6-68" FT /id="SpyM50126" FT /label=HMMPfam FT /note="HMMPfam hit to PF02874, ATP synthase alpha/beta FT family, beta-ba, score 1e-13" FT misc_feature 142451..143125 FT /colour=9 FT /domain="HMMPfam:PF00006;ATP synthase alpha/beta family, FT nucleot;1.6e-95;codon 212-436" FT /id="SpyM50126" FT /label=HMMPfam FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleot, score 1.6e-95" FT misc_feature 142514..142537 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 143096..143125 FT /colour=8 FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT misc_feature 143180..143578 FT /colour=9 FT /domain="HMMPfam:PF00306;ATP synthase alpha/beta chain, C FT termin;9.9e-36;codon 455-587" FT /id="SpyM50126" FT /label=HMMPfam FT /note="HMMPfam hit to PF00306, ATP synthase alpha/beta FT chain, C termin, score 9.9e-36" FT CDS 143594..145009 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0155" FT /MGAS10270_orthologue="MGAS10270_Spy0134" FT /MGAS10394_orthologue="M6_Spy0179" FT /MGAS10750_orthologue="MGAS10750_Spy0137" FT /MGAS2096_orthologue="MGAS2096_Spy0137" FT /MGAS315_orthologue="ntpB" FT /MGAS5005_orthologue="M5005_Spy0132" FT /MGAS6180_orthologue="M28_Spy0130" FT /MGAS8232_orthologue="spyM18_0151" FT /MGAS9429_orthologue="MGAS9429_Spy0134" FT /SSI_1_orthologue="SPs0123" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00123.out" FT /gene="ntpB" FT /product="V-type sodium ATP synthase subunit B" FT /systematic_id="SpyM50127" FT misc_feature 143621..143821 FT /colour=9 FT /domain="HMMPfam:PF02874;ATP synthase alpha/beta family, FT beta-ba;2.8e-13;codon 10-76" FT /id="SpyM50127" FT /label=HMMPfam FT /note="HMMPfam hit to PF02874, ATP synthase alpha/beta FT family, beta-ba, score 2.8e-13" FT misc_feature 143987..144646 FT /colour=9 FT /domain="HMMPfam:PF00006;ATP synthase alpha/beta family, FT nucleot;2.2e-97;codon 132-351" FT /id="SpyM50127" FT /label=HMMPfam FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleot, score 2.2e-97" FT misc_feature 144617..144646 FT /colour=8 FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT misc_feature 144695..144973 FT /colour=9 FT /domain="HMMPfam:PF00306;ATP synthase alpha/beta chain, C FT termin;3.4e-21;codon 368-460" FT /id="SpyM50127" FT /label=HMMPfam FT /note="HMMPfam hit to PF00306, ATP synthase alpha/beta FT chain, C termin, score 3.4e-21" FT CDS 145054..145680 FT /EC_number="3.6.3.15" FT /M1_GAS_orthologue="SPy0157" FT /MGAS10270_orthologue="MGAS10270_Spy0135" FT /MGAS10394_orthologue="M6_Spy0180" FT /MGAS10750_orthologue="MGAS10750_Spy0138" FT /MGAS2096_orthologue="MGAS2096_Spy0138" FT /MGAS315_orthologue="ntpD" FT /MGAS5005_orthologue="M5005_Spy0133" FT /MGAS6180_orthologue="M28_Spy0131" FT /MGAS8232_orthologue="spyM18_0153" FT /MGAS9429_orthologue="MGAS9429_Spy0135" FT /SSI_1_orthologue="SPs0124" FT /class="3.5.9" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00124.out" FT /gene="ntpD" FT /product="V-type sodium ATP synthase subunit D" FT /systematic_id="SpyM50128" FT misc_feature 145084..145674 FT /colour=9 FT /domain="HMMPfam:PF01813;ATP synthase subunit FT D;2.2e-57;codon 11-207" FT /id="SpyM50128" FT /label=HMMPfam FT /note="HMMPfam hit to PF01813, ATP synthase subunit D, FT score 2.2e-57" FT CDS complement(145800..147062) FT /M1_GAS_orthologue="SPy0158" FT /MGAS10270_orthologue="MGAS10270_Spy0136" FT /MGAS10394_orthologue="M6_Spy0181" FT /MGAS10750_orthologue="MGAS10750_Spy0139" FT /MGAS2096_orthologue="MGAS2096_Spy0139" FT /MGAS315_orthologue="SpyM3_0123" FT /MGAS5005_orthologue="M5005_Spy0134" FT /MGAS6180_orthologue="M28_Spy0132" FT /MGAS8232_orthologue="spyM18_0154" FT /MGAS9429_orthologue="MGAS9429_Spy0136" FT /SSI_1_orthologue="SPs0125" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00125.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50129" FT CDS complement(147075..147953) FT /M1_GAS_orthologue="SPy0159" FT /MGAS10270_orthologue="MGAS10270_Spy0137" FT /MGAS10394_orthologue="M6_Spy0182" FT /MGAS10750_orthologue="MGAS10750_Spy0140" FT /MGAS2096_orthologue="MGAS2096_Spy0140" FT /MGAS315_orthologue="SpyM3_0124" FT /MGAS5005_orthologue="M5005_Spy0135" FT /MGAS6180_orthologue="M28_Spy0133" FT /MGAS8232_orthologue="spyM18_0155" FT /MGAS9429_orthologue="MGAS9429_Spy0137" FT /SSI_1_orthologue="SPs0126" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00126.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50130" FT misc_feature complement(join(147783..147836,147849..147917)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /coord="40,57" FT /id="SpyM50130" FT /note="2 probable transmembrane helices predicted for FT SpyM50130 by TMHMM2.0 at aa 13-35 and 40-57" FT /type="TMHMM" FT misc_feature complement(147810..147953) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.641" FT /colour=3 FT /coord="48,49" FT /id="SpyM50130" FT /note="Signal peptide predicted for SpyM50130 by SignalP FT 2.0 HMM (Signal peptide probability 0.981) with cleavage FT site probability 0.641 between residues 48 and 49" FT /signal="0.981" FT /type="signalp" FT CDS 148391..149683 FT /EC_number="6.3.4.4" FT /M1_GAS_orthologue="SPy0160" FT /MGAS10270_orthologue="MGAS10270_Spy0138" FT /MGAS10394_orthologue="M6_Spy0183" FT /MGAS10750_orthologue="MGAS10750_Spy0141" FT /MGAS315_orthologue="purA" FT /MGAS5005_orthologue="M5005_Spy0136" FT /MGAS6180_orthologue="M28_Spy0134" FT /MGAS8232_orthologue="spyM18_0156" FT /MGAS9429_orthologue="MGAS9429_Spy0138" FT /SSI_1_orthologue="SPs0127" FT /class="3.3.11" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00127.out" FT /gene="purA" FT /product="adenylosuccinate synthetase" FT /systematic_id="SpyM50131" FT misc_feature 148397..149656 FT /colour=9 FT /domain="HMMPfam:PF00709;Adenylosuccinate FT synthetase;6e-277;codon 3-422" FT /id="SpyM50131" FT /label=HMMPfam FT /note="HMMPfam hit to PF00709, Adenylosuccinate FT synthetase, score 6e-277" FT misc_feature 148418..148441 FT /colour=8 FT /note="PS01266 Adenylosuccinate synthetase GTP-binding FT site." FT misc_feature 148781..148816 FT /colour=8 FT /note="PS00513 Adenylosuccinate synthetase active site." FT CDS 150010..151053 FT /M1_GAS_orthologue="SPy0163" FT /MGAS10270_orthologue="MGAS10270_Spy0139" FT /MGAS10394_orthologue="M6_Spy0184" FT /MGAS10750_orthologue="MGAS10750_Spy0142" FT /MGAS2096_orthologue="MGAS2096_Spy0143" FT /MGAS315_orthologue="SpyM3_0126" FT /MGAS5005_orthologue="M5005_Spy0137" FT /MGAS6180_orthologue="M28_Spy0135" FT /MGAS8232_orthologue="spyM18_0158" FT /MGAS9429_orthologue="MGAS9429_Spy0139" FT /SSI_1_orthologue="SPs0128" FT /class="4.1.7" FT /cluster="Spy_40:0025 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00128.out" FT /note="Similar to SpyM50856, 65.043% identity (65.607% FT ungapped) in 349 aa overlap" FT /product="basic lipoprotein" FT /systematic_id="SpyM50132" FT misc_feature 150010..150090 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.459" FT /colour=3 FT /coord="27,28" FT /id="SpyM50132" FT /note="Signal peptide predicted for SpyM50132 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.459 between residues 27 and 28" FT /signal="1.000" FT /type="signalp" FT misc_feature 150037..151050 FT /colour=9 FT /domain="HMMPfam:PF02608;Basic membrane FT protein;2.1e-84;codon 10-347" FT /id="SpyM50132" FT /label=HMMPfam FT /note="HMMPfam hit to PF02608, Basic membrane protein, FT score 2.1e-84" FT misc_feature 150040..150072 FT /colour=8 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 150613..150636 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 150685..150705 FT /colour=8 FT /note="PS00227 Tubulin subunits alpha, beta, and gamma FT signature." FT CDS 151227..151766 FT /M1_GAS_orthologue="SPy0164" FT /MGAS10270_orthologue="MGAS10270_Spy0140" FT /MGAS10394_orthologue="M6_Spy0185" FT /MGAS10750_orthologue="MGAS10750_Spy0144" FT /MGAS2096_orthologue="MGAS2096_Spy0145" FT /MGAS315_orthologue="nusG" FT /MGAS5005_orthologue="M5005_Spy0138" FT /MGAS6180_orthologue="M28_Spy0136" FT /MGAS8232_orthologue="spyM18_0159" FT /MGAS9429_orthologue="MGAS9429_Spy0140" FT /SSI_1_orthologue="SPs0129" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00129.out" FT /gene="nusG" FT /product="transcription antitermination factor" FT /systematic_id="SpyM50133" FT misc_feature 151242..151373 FT /colour=9 FT /domain="HMMPfam:PF02357;Transcription termination factor FT nusG;1.3e-17;codon 6-49" FT /id="SpyM50133" FT /label=HMMPfam FT /note="HMMPfam hit to PF02357, Transcription termination FT factor nusG, score 1.3e-17" FT misc_feature 151608..151709 FT /colour=9 FT /domain="HMMPfam:PF00467;KOW motif;1.1e-08;codon 128-161" FT /id="SpyM50133" FT /label=HMMPfam FT /note="HMMPfam hit to PF00467, KOW motif, score 1.1e-08" FT CDS 152138..153493 FT /EC_number="3.2.2.5" FT /M1_GAS_orthologue="SPy0165" FT /MGAS10270_orthologue="MGAS10270_Spy0141" FT /MGAS10394_orthologue="M6_Spy0186" FT /MGAS10750_orthologue="MGAS10750_Spy0145" FT /MGAS2096_orthologue="MGAS2096_Spy0146" FT /MGAS315_orthologue="nga" FT /MGAS5005_orthologue="M5005_Spy0139" FT /MGAS6180_orthologue="M28_Spy0137" FT /MGAS8232_orthologue="nga" FT /MGAS9429_orthologue="MGAS9429_Spy0141" FT /SSI_1_orthologue="SPs0130" FT /class="3.4.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00130.out" FT /gene="nga" FT /product="nicotine adenine dinucleotide glycohydrolase FT precursor" FT /systematic_id="SpyM50134" FT misc_feature 152138..152248 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.863" FT /colour=3 FT /coord="40,41" FT /id="SpyM50134" FT /note="Signal peptide predicted for SpyM50134 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.863 between residues 40 and 41" FT /signal="0.999" FT /type="signalp" FT misc_feature 152138..153475 FT /colour=9 FT /domain="HMMPfam:PF07461;Nicotine adenine dinucleotide FT glycohydrola;0;codon 4-449" FT /id="SpyM50134" FT /label=HMMPfam FT /note="HMMPfam hit to PF07461, Nicotine adenine FT dinucleotide glycohydrola, score 0" FT misc_feature 152186..152254 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="20,42" FT /id="SpyM50134" FT /note="1 probable transmembrane helix predicted for FT SpyM50134 by TMHMM2.0 at aa 20-42" FT /type="TMHMM" FT CDS 153627..153983 FT /M1_GAS_orthologue="SPy0166" FT /MGAS8232_orthologue="spyM18_0164" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00131.out" FT /product="hypothetical protein" FT /systematic_id="SpyM50135" FT CDS 153998..155722 FT /M1_GAS_orthologue="SPy0167" FT /MGAS10270_orthologue="MGAS10270_Spy0143" FT /MGAS10394_orthologue="M6_Spy0188" FT /MGAS10750_orthologue="MGAS10750_Spy0147" FT /MGAS2096_orthologue="MGAS2096_Spy0148" FT /MGAS315_orthologue="slo" FT /MGAS5005_orthologue="M5005_Spy0141" FT /MGAS6180_orthologue="M28_Spy0139" FT /MGAS8232_orthologue="slo" FT /MGAS9429_orthologue="MGAS9429_Spy0143" FT /SSI_1_orthologue="SPs0132" FT /class="5.1.5" FT /colour=0 FT /fasta_file="fasta/SP_new.tab.seq.00132.out" FT /gene="slo" FT /product="streptolysin O precursor (thiol-activated FT cytolysin)" FT /systematic_id="SpyM50136" FT misc_feature 153998..154099 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.965" FT /colour=3 FT /coord="34,35" FT /id="SpyM50136" FT /note="Signal peptide predicted for SpyM50136 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.965 between residues 34 and 35" FT /signal="1.000" FT /type="signalp" FT misc_feature 154034..154093 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,32" FT /id="SpyM50136" FT /note="1 probable transmembrane helix predicted for FT SpyM50136 by TMHMM2.0 at aa 13-32" FT /type="TMHMM" FT misc_feature 154319..155716 FT /colour=9 FT /domain="HMMPfam:PF01289;Thiol-activated cytolysin;0;codon FT 108-573" FT /id="SpyM50136" FT /label=HMMPfam FT /note="HMMPfam hit to PF01289, Thiol-activated cytolysin, FT score 0" FT misc_feature 155588..155623 FT /colour=8 FT /note="PS00481 Thiol-activated cytolysins signature." FT CDS complement(155861..156103) FT /M1_GAS_orthologue="SPy0169" FT /MGAS10270_orthologue="MGAS10270_Spy0145" FT /MGAS10394_orthologue="M6_Spy0189" FT /MGAS10750_orthologue="MGAS10750_Spy0149" FT /MGAS315_orthologue="SpyM3_0131" FT /MGAS8232_orthologue="spyM18_0166" FT /SSI_1_orthologue="SPs0133" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00133.out" FT /note="Similar to SpyM50138, 58.730% identity (72.549% FT ungapped) in 63 aa overlap" FT /product="putative exported protein" FT /systematic_id="SpyM50137" FT misc_feature complement(155984..156103) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.476" FT /colour=3 FT /coord="42,43" FT /id="SpyM50137" FT /note="Signal peptide predicted for SpyM50137 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.476 between residues 42 and 43" FT /signal="1.000" FT /type="signalp" FT misc_feature complement(156038..156091) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,24" FT /id="SpyM50137" FT /note="1 probable transmembrane helix predicted for FT SpyM50137 by TMHMM2.0 at aa 7-24" FT /type="TMHMM" FT CDS complement(156504..156671) FT /M1_GAS_orthologue="SPy0170" FT /MGAS10270_orthologue="MGAS10270_Spy0146" FT /MGAS10394_orthologue="M6_Spy0190" FT /MGAS10750_orthologue="MGAS10750_Spy0150" FT /MGAS2096_orthologue="MGAS2096_Spy0150" FT /MGAS315_orthologue="SpyM3_0132" FT /MGAS5005_orthologue="M5005_Spy0144" FT /MGAS6180_orthologue="M28_Spy0142" FT /MGAS8232_orthologue="spyM18_0167" FT /MGAS9429_orthologue="MGAS9429_Spy0146" FT /SSI_1_orthologue="SPs0134" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00134.out" FT /note="similar to SpyM50137, 58.730% identity (72.549% FT ungapped) in 63 aa overlap" FT /product="putative exported protein" FT /systematic_id="SpyM50138" FT misc_feature complement(156579..156671) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.996" FT /colour=3 FT /coord="31,32" FT /id="SpyM50138" FT /note="Signal peptide predicted for SpyM50138 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.996 between residues 31 and 32" FT /signal="1.000" FT /type="signalp" FT misc_feature complement(156585..156653) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,29" FT /id="SpyM50138" FT /note="1 probable transmembrane helix predicted for FT SpyM50138 by TMHMM2.0 at aa 7-29" FT /type="TMHMM" FT CDS complement(156856..157122) FT /M1_GAS_orthologue="SPy0171" FT /MGAS10270_orthologue="MGAS10270_Spy0147" FT /MGAS10394_orthologue="M6_Spy0191" FT /MGAS5005_orthologue="M5005_Spy0145" FT /MGAS6180_orthologue="M28_Spy0143" FT /MGAS8232_orthologue="spyM18_0168" FT /MGAS9429_orthologue="MGAS9429_Spy0147" FT /SSI_1_orthologue="SPs0135" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00135.out" FT /product="putative exported protein" FT /systematic_id="SpyM50139" FT misc_feature complement(157033..157122) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.632" FT /colour=3 FT /coord="30,31" FT /id="SpyM50139" FT /note="Signal peptide predicted for SpyM50139 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.632 between residues 30 and 31" FT /signal="0.999" FT /type="signalp" FT CDS 157606..158745 FT /EC_number="4.4.1.8" FT /M1_GAS_orthologue="SPy0172" FT /MGAS10270_orthologue="MGAS10270_Spy0148" FT /MGAS10394_orthologue="M6_Spy0192" FT /MGAS10750_orthologue="MGAS10750_Spy0152" FT /MGAS315_orthologue="metB" FT /MGAS5005_orthologue="M5005_Spy0146" FT /MGAS6180_orthologue="M28_Spy0144" FT /MGAS8232_orthologue="spyM18_0170" FT /MGAS9429_orthologue="MGAS9429_Spy0148" FT /SSI_1_orthologue="SPs0136" FT /class="3.1.14" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00136.out" FT /product="putative cystathionine beta-lyase" FT /systematic_id="SpyM50140" FT misc_feature 157615..158739 FT /colour=9 FT /domain="HMMPfam:PF01053;Cys/Met metabolism PLP-dependent FT enzy;3.6e-178;codon 4-378" FT /id="SpyM50140" FT /label=HMMPfam FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzy, score 3.6e-178" FT CDS 158957..161458 FT /EC_number="6.1.1.4" FT /M1_GAS_orthologue="SPy0173" FT /MGAS10270_orthologue="MGAS10270_Spy0149" FT /MGAS10394_orthologue="M6_Spy0193" FT /MGAS10750_orthologue="MGAS10750_Spy0153" FT /MGAS2096_orthologue="MGAS2096_Spy0154" FT /MGAS315_orthologue="leuS" FT /MGAS5005_orthologue="M5005_Spy0147" FT /MGAS6180_orthologue="M28_Spy0145" FT /MGAS8232_orthologue="leuS" FT /MGAS9429_orthologue="MGAS9429_Spy0149" FT /SSI_1_orthologue="SPs0137" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00137.out" FT /gene="leuS" FT /product="leucyl-tRNA synthetase" FT /systematic_id="SpyM50141" FT misc_feature 158990..160906 FT /colour=9 FT /domain="HMMPfam:PF00133;tRNA synthetases class I (I, L, M FT and V);6.6e-213;codon 12-650" FT /id="SpyM50141" FT /label=HMMPfam FT /note="HMMPfam hit to PF00133, tRNA synthetases class I FT (I, L, M and V), score 6.6e-213" FT misc_feature 159083..159115 FT /colour=8 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 161765..163198 FT /EC_number="2.7.1.69" FT /M1_GAS_orthologue="SPy0174" FT /MGAS10270_orthologue="MGAS10270_Spy0150" FT /MGAS10394_orthologue="M6_Spy0194" FT /MGAS10750_orthologue="MGAS10750_Spy0154" FT /MGAS2096_orthologue="MGAS2096_Spy0156" FT /MGAS315_orthologue="SpyM3_0135" FT /MGAS5005_orthologue="M5005_Spy0148" FT /MGAS6180_orthologue="M28_Spy0146" FT /MGAS8232_orthologue="spyM18_0173" FT /MGAS9429_orthologue="MGAS9429_Spy0150" FT /SSI_1_orthologue="SPs0138" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00138.out" FT /product="putative sugar-specific permease, SgaT/UlaA FT family" FT /systematic_id="SpyM50142" FT misc_feature 161777..163057 FT /colour=9 FT /domain="HMMPfam:PF04215;Putative sugar-specific permease, FT SgaT/UlaA;1.9e-263;codon 5-431" FT /id="SpyM50142" FT /label=HMMPfam FT /note="HMMPfam hit to PF04215, Putative sugar-specific FT permease, SgaT/UlaA, score 1.9e-263" FT misc_feature join(161807..161866,161885..161953,162065..162133,162158..162226,162242..162295,162473..162541,162584..162652,162779..162847,162857..162919,162956..163024,163067..163135) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="15,34" FT /coord="41,63" FT /coord="101,123" FT /coord="132,154" FT /coord="160,177" FT /coord="237,259" FT /coord="274,296" FT /coord="339,361" FT /coord="365,385" FT /coord="398,420" FT /coord="435,457" FT /id="SpyM50142" FT /note="11 probable transmembrane helices predicted for FT SpyM50142 by TMHMM2.0 at aa 15-34, 41-63, 101-123, FT 132-154, 160-177, 237-259, 274-296, 339-361, 365-385, FT 398-420 and 435-457" FT /type="TMHMM" FT CDS 163269..163547 FT /EC_number="2.7.1.69" FT /M1_GAS_orthologue="SPy0175" FT /MGAS10270_orthologue="MGAS10270_Spy0151" FT /MGAS10394_orthologue="M6_Spy0195" FT /MGAS10750_orthologue="MGAS10750_Spy0155" FT /MGAS2096_orthologue="MGAS2096_Spy0157" FT /MGAS315_orthologue="SpyM3_0136" FT /MGAS5005_orthologue="M5005_Spy0149" FT /MGAS6180_orthologue="M28_Spy0147" FT /MGAS8232_orthologue="spyM18_0174" FT /MGAS9429_orthologue="MGAS9429_Spy0151" FT /SSI_1_orthologue="SPs0139" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00139.out" FT /product="sugar phosphotransferase system (PTS), FT lactose/cellobiose-specific family, IIB component" FT /systematic_id="SpyM50143" FT misc_feature 163275..163544 FT /colour=9 FT /domain="HMMPfam:PF02302;PTS system, Lactose/Cellobiose FT specific IIB;1.4e-30;codon 3-92" FT /id="SpyM50143" FT /label=HMMPfam FT /note="HMMPfam hit to PF02302, PTS system, FT Lactose/Cellobiose specific IIB, score 1.4e-30" FT CDS 163670..164155 FT /EC_number="2.7.1.69" FT /M1_GAS_orthologue="SPy0176" FT /MGAS10270_orthologue="MGAS10270_Spy0152" FT /MGAS10394_orthologue="M6_Spy0196" FT /MGAS10750_orthologue="MGAS10750_Spy0156" FT /MGAS2096_orthologue="MGAS2096_Spy0158" FT /MGAS315_orthologue="SpyM3_0137" FT /MGAS5005_orthologue="M5005_Spy0150" FT /MGAS6180_orthologue="M28_Spy0148" FT /MGAS8232_orthologue="spyM18_0175" FT /MGAS9429_orthologue="MGAS9429_Spy0152" FT /SSI_1_orthologue="SPs0140" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00140.out" FT /product="sugar phosphotransferase system (PTS), IIA FT component" FT /systematic_id="SpyM50144" FT misc_feature 163685..164113 FT /colour=9 FT /domain="HMMPfam:PF00359;Phosphoenolpyruvate-dependent FT sugar phosph;1.3e-30;codon 6-148" FT /id="SpyM50144" FT /label=HMMPfam FT /note="HMMPfam hit to PF00359, FT Phosphoenolpyruvate-dependent sugar phosph, score 1.3e-30" FT CDS 164246..164908 FT /M1_GAS_orthologue="SPy0177" FT /MGAS10270_orthologue="MGAS10270_Spy0153" FT /MGAS10394_orthologue="M6_Spy0197" FT /MGAS10750_orthologue="MGAS10750_Spy0157" FT /MGAS2096_orthologue="MGAS2096_Spy0159" FT /MGAS315_orthologue="SpyM3_0138" FT /MGAS5005_orthologue="M5005_Spy0151" FT /MGAS6180_orthologue="M28_Spy0149" FT /MGAS8232_orthologue="spyM18_0176" FT /MGAS9429_orthologue="MGAS9429_Spy0153" FT /SSI_1_orthologue="SPs0141" FT /class="3.4.3" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00141.out" FT /product="putative hexulose-6-phosphate synthase" FT /systematic_id="SpyM50145" FT misc_feature 164258..164878 FT /colour=9 FT /domain="HMMPfam:PF00215;Orotidine 5'-phosphate FT decarboxylase / HUMP;1.9e-55;codon 5-211" FT /id="SpyM50145" FT /label=HMMPfam FT /note="HMMPfam hit to PF00215, Orotidine 5'-phosphate FT decarboxylase / HUMP, score 1.9e-55" FT CDS 164913..165776 FT /M1_GAS_orthologue="SPy0178" FT /MGAS10270_orthologue="MGAS10270_Spy0154" FT /MGAS10394_orthologue="M6_Spy0198" FT /MGAS10750_orthologue="MGAS10750_Spy0158" FT /MGAS2096_orthologue="MGAS2096_Spy0160" FT /MGAS315_orthologue="SpyM3_0139" FT /MGAS5005_orthologue="M5005_Spy0152" FT /MGAS6180_orthologue="M28_Spy0150" FT /MGAS8232_orthologue="spyM18_0177" FT /MGAS9429_orthologue="MGAS9429_Spy0154" FT /SSI_1_orthologue="SPs0142" FT /class="3.4.3" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00142.out" FT /product="putative hexulose-6-phosphate isomerase" FT /systematic_id="SpyM50146" FT misc_feature 164976..165611 FT /colour=9 FT /domain="HMMPfam:PF01261;Xylose isomerase-like TIM FT barrel;5.5e-46;codon 22-233" FT /id="SpyM50146" FT /label=HMMPfam FT /note="HMMPfam hit to PF01261, Xylose isomerase-like TIM FT barrel, score 5.5e-46" FT CDS 165778..166482 FT /EC_number="5.1.3.4" FT /M1_GAS_orthologue="SPy0179" FT /MGAS10270_orthologue="MGAS10270_Spy0155" FT /MGAS10394_orthologue="M6_Spy0199" FT /MGAS10750_orthologue="MGAS10750_Spy0159" FT /MGAS2096_orthologue="MGAS2096_Spy0161" FT /MGAS315_orthologue="araD" FT /MGAS5005_orthologue="M5005_Spy0153" FT /MGAS6180_orthologue="M28_Spy0151" FT /MGAS8232_orthologue="spyM18_0178" FT /MGAS9429_orthologue="MGAS9429_Spy0155" FT /SSI_1_orthologue="SPs0143" FT /class="3.4.3" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00143.out" FT /product="L-ribulose 5-phosphate 4-epimerase" FT /systematic_id="SpyM50147" FT misc_feature 165805..166437 FT /colour=9 FT /domain="HMMPfam:PF00596;Class II Aldolase and Adducin FT N-terminal;1.9e-99;codon 10-220" FT /id="SpyM50147" FT /label=HMMPfam FT /note="HMMPfam hit to PF00596, Class II Aldolase and FT Adducin N-terminal, score 1.9e-99" FT misc_feature 166297..166320 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 166540..166686 FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.01823.out" FT /note="No significant database matches" FT /note="Doubtful CDS" FT /product="hypothetical protein" FT /systematic_id="SpyM50147A" FT CDS 166807..168453 FT /M1_GAS_orthologue="SPy0181" FT /MGAS10270_orthologue="MGAS10270_Spy0157" FT /MGAS10394_orthologue="M6_Spy0201" FT /MGAS10750_orthologue="MGAS10750_Spy0161" FT /MGAS2096_orthologue="MGAS2096_Spy0163" FT /MGAS315_orthologue="SpyM3_0141" FT /MGAS5005_orthologue="M5005_Spy0155" FT /MGAS6180_orthologue="M28_Spy0153" FT /MGAS8232_orthologue="spyM18_0179" FT /MGAS9429_orthologue="MGAS9429_Spy0157" FT /SSI_1_orthologue="SPs0145" FT /class="6.5.0" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00144.out" FT /note="Possible alternate translational start site after FT codon 1" FT /product="putative transcriptional antiterminator" FT /systematic_id="SpyM50148" FT misc_feature 167413..167703 FT /colour=9 FT /domain="HMMPfam:PF00874;PRD domain;2.3e-14;codon 203-299" FT /id="SpyM50148" FT /label=HMMPfam FT /note="HMMPfam hit to PF00874, PRD domain, score 2.3e-14" FT misc_feature 167764..168036 FT /colour=9 FT /domain="HMMPfam:PF00874;PRD domain;1.3e-15;codon 320-410" FT /id="SpyM50148" FT /label=HMMPfam FT /note="HMMPfam hit to PF00874, PRD domain, score 1.3e-15" FT CDS 168706..169797 FT /M1_GAS_orthologue="SPy0182" FT /MGAS10270_orthologue="MGAS10270_Spy0158" FT /MGAS10394_orthologue="M6_Spy0202" FT /MGAS10750_orthologue="MGAS10750_Spy0162" FT /MGAS2096_orthologue="MGAS2096_Spy0164" FT /MGAS315_orthologue="SpyM3_0142" FT /MGAS5005_orthologue="M5005_Spy0156" FT /MGAS6180_orthologue="M28_Spy0154" FT /MGAS8232_orthologue="spyM18_0180" FT /MGAS9429_orthologue="MGAS9429_Spy0158" FT /SSI_1_orthologue="SPs0146" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00145.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50149" FT CDS 170285..171481 FT /M1_GAS_orthologue="SPy0183" FT /MGAS10270_orthologue="MGAS10270_Spy0159" FT /MGAS10394_orthologue="M6_Spy0203" FT /MGAS10750_orthologue="MGAS10750_Spy0163" FT /MGAS315_orthologue="opuAA" FT /MGAS5005_orthologue="M5005_Spy0157" FT /MGAS6180_orthologue="M28_Spy0155" FT /MGAS8232_orthologue="spyM18_0181" FT /MGAS9429_orthologue="MGAS9429_Spy0159" FT /SSI_1_orthologue="SPs0147" FT /class="1.5.5" FT /cluster="Spy_40:0003 4" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00146.out" FT /product="putative glycine betaine transport ATP-binding FT protein" FT /systematic_id="SpyM50150" FT misc_feature 170444..171007 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;1.2e-68;codon FT 54-241" FT /id="SpyM50150" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.2e-68" FT misc_feature 170465..170488 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 170777..170821 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT misc_feature 171116..171277 FT /colour=9 FT /domain="HMMPfam:PF00571;CBS domain;0.057;codon 278-331" FT /id="SpyM50150" FT /label=HMMPfam FT /note="HMMPfam hit to PF00571, CBS domain, score 0.057" FT misc_feature 171296..171454 FT /colour=9 FT /domain="HMMPfam:PF00571;CBS domain;0.0001;codon 338-390" FT /id="SpyM50150" FT /label=HMMPfam FT /note="HMMPfam hit to PF00571, CBS domain, score 0.0001" FT CDS 171497..173224 FT /M1_GAS_orthologue="SPy0184" FT /MGAS10270_orthologue="MGAS10270_Spy0160" FT /MGAS10394_orthologue="M6_Spy0204" FT /MGAS10750_orthologue="MGAS10750_Spy0164" FT /MGAS315_orthologue="opuABC" FT /MGAS5005_orthologue="M5005_Spy0158" FT /MGAS6180_orthologue="M28_Spy0156" FT /MGAS8232_orthologue="spyM18_0182" FT /MGAS9429_orthologue="MGAS9429_Spy0160" FT /SSI_1_orthologue="SPs0148" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00147.out" FT /product="putative glycine-betaine binding permease FT protein" FT /systematic_id="SpyM50151" FT misc_feature join(171638..171697,171710..171769,171788..171856,171926..171994,172139..172207,172250..172303,172364..172432) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="48,67" FT /coord="72,91" FT /coord="98,120" FT /coord="144,166" FT /coord="215,237" FT /coord="252,269" FT /coord="290,312" FT /id="SpyM50151" FT /note="7 probable transmembrane helices predicted for FT SpyM50151 by TMHMM2.0 at aa 48-67, 72-91, 98-120, 144-166, FT 215-237, 252-269 and 290-312" FT /type="TMHMM" FT misc_feature 171776..172342 FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;2.9e-32;codon 94-282" FT /id="SpyM50151" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 2.9e-32" FT misc_feature 172031..172117 FT /colour=8 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature 172463..173221 FT /colour=9 FT /domain="HMMPfam:PF04069;Substrate binding domain of FT ABC-type gly;5.1e-103;codon 323-575" FT /id="SpyM50151" FT /label=HMMPfam FT /note="HMMPfam hit to PF04069, Substrate binding domain of FT ABC-type gly, score 5.1e-103" FT CDS 173355..175997 FT /EC_number="2.7.7.7" FT /M1_GAS_orthologue="SPy0185" FT /MGAS10270_orthologue="MGAS10270_Spy0161" FT /MGAS10394_orthologue="M6_Spy0205" FT /MGAS10750_orthologue="MGAS10750_Spy0165" FT /MGAS2096_orthologue="MGAS2096_Spy0170" FT /MGAS315_orthologue="polA.1" FT /MGAS5005_orthologue="M5005_Spy0159" FT /MGAS6180_orthologue="M28_Spy0157" FT /MGAS8232_orthologue="spyM18_0184" FT /MGAS9429_orthologue="MGAS9429_Spy0161" FT /SSI_1_orthologue="SPs0149" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00148.out" FT /gene="polA" FT /gene="pol" FT /product="DNA polymerase I" FT /systematic_id="SpyM50152" FT misc_feature 173367..173885 FT /colour=9 FT /domain="HMMPfam:PF02739;5'-3' exonuclease, N-terminal FT resolvase-;2.7e-98;codon 5-177" FT /id="SpyM50152" FT /label=HMMPfam FT /note="HMMPfam hit to PF02739, 5'-3' exonuclease, FT N-terminal resolvase-, score 2.7e-98" FT misc_feature 173889..174191 FT /colour=9 FT /domain="HMMPfam:PF01367;5'-3' exonuclease, C-terminal SAM FT fold;1.1e-49;codon 179-279" FT /id="SpyM50152" FT /label=HMMPfam FT /note="HMMPfam hit to PF01367, 5'-3' exonuclease, FT C-terminal SAM fold, score 1.1e-49" FT misc_feature 174843..175991 FT /colour=9 FT /domain="HMMPfam:PF00476;DNA polymerase family FT A;3e-215;codon 497-879" FT /id="SpyM50152" FT /label=HMMPfam FT /note="HMMPfam hit to PF00476, DNA polymerase family A, FT score 3e-215" FT misc_feature 175470..175529 FT /colour=8 FT /note="PS00447 DNA polymerase family A signature." FT CDS 176175..176630 FT /M1_GAS_orthologue="SPy0186" FT /MGAS10270_orthologue="MGAS10270_Spy0162" FT /MGAS10394_orthologue="M6_Spy0206" FT /MGAS10750_orthologue="MGAS10750_Spy0166" FT /MGAS2096_orthologue="MGAS2096_Spy0171" FT /MGAS315_orthologue="SpyM3_0146" FT /MGAS5005_orthologue="M5005_Spy0160" FT /MGAS6180_orthologue="M28_Spy0158" FT /MGAS8232_orthologue="spyM18_0185" FT /MGAS9429_orthologue="MGAS9429_Spy0162" FT /SSI_1_orthologue="SPs0150" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00149.out" FT /product="putative CoA binding protein" FT /systematic_id="SpyM50153" FT misc_feature 176223..176552 FT /colour=9 FT /domain="HMMPfam:PF02629;CoA binding domain;6e-18;codon FT 17-126" FT /id="SpyM50153" FT /label=HMMPfam FT /note="HMMPfam hit to PF02629, CoA binding domain, score FT 6e-18" FT CDS 176682..177149 FT /M1_GAS_orthologue="SPy0187" FT /MGAS10270_orthologue="MGAS10270_Spy0163" FT /MGAS10394_orthologue="M6_Spy0207" FT /MGAS10750_orthologue="MGAS10750_Spy0167" FT /MGAS2096_orthologue="MGAS2096_Spy0172" FT /MGAS315_orthologue="spf" FT /MGAS5005_orthologue="M5005_Spy0161" FT /MGAS6180_orthologue="M28_Spy0159" FT /MGAS8232_orthologue="spyM18_0186" FT /MGAS9429_orthologue="MGAS9429_Spy0163" FT /SSI_1_orthologue="SPs0151" FT /class="6.5.0" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00150.out" FT /product="ferric uptake regulator family protein" FT /systematic_id="SpyM50154" FT misc_feature 176745..177104 FT /colour=9 FT /domain="HMMPfam:PF01475;Ferric uptake regulator FT family;1.6e-52;codon 22-141" FT /id="SpyM50154" FT /label=HMMPfam FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family, score 1.6e-52" FT CDS complement(177252..178115) FT /M1_GAS_orthologue="SPy0201" FT /MGAS10270_orthologue="MGAS10270_Spy0176" FT /MGAS10394_orthologue="M6_Spy0208" FT /MGAS10750_orthologue="MGAS10750_Spy0168" FT /MGAS2096_orthologue="MGAS2096_Spy0184" FT /MGAS315_orthologue="SpyM3_0148" FT /MGAS5005_orthologue="M5005_Spy0173" FT /MGAS6180_orthologue="M28_Spy0171" FT /MGAS8232_orthologue="spyM18_0187" FT /MGAS9429_orthologue="MGAS9429_Spy0175" FT /SSI_1_orthologue="SPs0152" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00151.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50155" FT misc_feature complement(177348..178115) FT /colour=9 FT /domain="HMMPfam:PF06161;Protein of unknown function FT (DUF975);1.2e-116;codon 1-256" FT /id="SpyM50155" FT /label=HMMPfam FT /note="HMMPfam hit to PF06161, Protein of unknown function FT (DUF975), score 1.2e-116" FT misc_feature complement(join(177369..177437,177495..177548,177609..177677,177705..177773,177891..177959,177987..178055)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,43" FT /coord="53,75" FT /coord="115,137" FT /coord="147,169" FT /coord="190,207" FT /coord="227,249" FT /id="SpyM50155" FT /note="6 probable transmembrane helices predicted for FT SpyM50155 by TMHMM2.0 at aa 21-43, 53-75, 115-137, FT 147-169, 190-207 and 227-249" FT /type="TMHMM" FT CDS 178152..178337 FT /MGAS10270_orthologue="MGAS10270_Spy0177" FT /MGAS10394_orthologue="M6_Spy0209" FT /MGAS10750_orthologue="MGAS10750_Spy0169" FT /MGAS2096_orthologue="MGAS2096_Spy0185" FT /MGAS5005_orthologue="M5005_Spy0174" FT /MGAS6180_orthologue="M28_Spy0172" FT /SSI_1_orthologue="SPs0153" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00152.out" FT /note="Doubtful CDS. No significant database matches" FT /product="hypothetical protein" FT /systematic_id="SpyM50156" FT CDS 178334..179476 FT /EC_number="2.4.2.29" FT /M1_GAS_orthologue="SPy0203" FT /MGAS10270_orthologue="MGAS10270_Spy0178" FT /MGAS10394_orthologue="M6_Spy0210" FT /MGAS10750_orthologue="MGAS10750_Spy0170" FT /MGAS2096_orthologue="MGAS2096_Spy0186" FT /MGAS315_orthologue="tgt" FT /MGAS5005_orthologue="M5005_Spy0175" FT /MGAS6180_orthologue="M28_Spy0173" FT /MGAS8232_orthologue="tgt" FT /MGAS9429_orthologue="MGAS9429_Spy0177" FT /SSI_1_orthologue="SPs0154" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00153.out" FT /gene="tgt" FT /product="queuine tRNA-ribosyltransferase" FT /systematic_id="SpyM50157" FT misc_feature 178727..179440 FT /colour=9 FT /domain="HMMPfam:PF01702;Queuine FT tRNA-ribosyltransferase;5.8e-147;codon 132-369" FT /id="SpyM50157" FT /label=HMMPfam FT /note="HMMPfam hit to PF01702, Queuine FT tRNA-ribosyltransferase, score 5.8e-147" FT CDS 179694..180005 FT /M1_GAS_orthologue="SPy0205" FT /MGAS10270_orthologue="MGAS10270_Spy0179" FT /MGAS10394_orthologue="M6_Spy0211" FT /MGAS10750_orthologue="MGAS10750_Spy0171" FT /MGAS2096_orthologue="MGAS2096_Spy0187" FT /MGAS315_orthologue="SpyM3_0150" FT /MGAS5005_orthologue="M5005_Spy0176" FT /MGAS6180_orthologue="M28_Spy0174" FT /MGAS8232_orthologue="spyM18_0191" FT /MGAS9429_orthologue="MGAS9429_Spy0178" FT /SSI_1_orthologue="SPs0155" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00154.out" FT /product="CHY zinc finger protein" FT /systematic_id="SpyM50158" FT misc_feature 179736..179954 FT /colour=9 FT /domain="HMMPfam:PF05495;CHY zinc finger;2.3e-33;codon FT 15-87" FT /id="SpyM50158" FT /label=HMMPfam FT /note="HMMPfam hit to PF05495, CHY zinc finger, score FT 2.3e-33" FT misc_feature 179805..179822 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 180009..180548 FT /M1_GAS_orthologue="SPy0207" FT /MGAS10270_orthologue="MGAS10270_Spy0180" FT /MGAS10394_orthologue="M6_Spy0212" FT /MGAS10750_orthologue="MGAS10750_Spy0172" FT /MGAS2096_orthologue="MGAS2096_Spy0188" FT /MGAS315_orthologue="SpyM3_0151" FT /MGAS5005_orthologue="M5005_Spy0177" FT /MGAS6180_orthologue="M28_Spy0175" FT /MGAS8232_orthologue="spyM18_0193" FT /MGAS9429_orthologue="MGAS9429_Spy0179" FT /SSI_1_orthologue="SPs0156" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00155.out" FT /product="BioY family protein" FT /systematic_id="SpyM50159" FT misc_feature 180009..180161 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.238" FT /colour=3 FT /coord="51,52" FT /id="SpyM50159" FT /note="Signal peptide predicted for SpyM50159 by SignalP FT 2.0 HMM (Signal peptide probability 0.880) with cleavage FT site probability 0.238 between residues 51 and 52" FT /signal="0.880" FT /type="signalp" FT misc_feature join(180027..180086,180096..180155,180174..180242,180270..180329,180348..180416,180444..180512) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /coord="30,49" FT /coord="56,78" FT /coord="88,107" FT /coord="114,136" FT /coord="146,168" FT /id="SpyM50159" FT /note="6 probable transmembrane helices predicted for FT SpyM50159 by TMHMM2.0 at aa 7-26, 30-49, 56-78, 88-107, FT 114-136 and 146-168" FT /type="TMHMM" FT misc_feature 180084..180530 FT /colour=9 FT /domain="HMMPfam:PF02632;BioY family;7e-21;codon 26-174" FT /id="SpyM50159" FT /label=HMMPfam FT /note="HMMPfam hit to PF02632, BioY family, score 7e-21" FT CDS 180688..181467 FT /M1_GAS_orthologue="SPy0208" FT /MGAS10270_orthologue="MGAS10270_Spy0181" FT /MGAS10394_orthologue="M6_Spy0213" FT /MGAS10750_orthologue="MGAS10750_Spy0173" FT /MGAS2096_orthologue="MGAS2096_Spy0191" FT /MGAS315_orthologue="SpyM3_0152" FT /MGAS5005_orthologue="M5005_Spy0178" FT /MGAS6180_orthologue="M28_Spy0176" FT /MGAS8232_orthologue="spyM18_0195" FT /MGAS9429_orthologue="MGAS9429_Spy0181" FT /SSI_1_orthologue="SPs0157" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00156.out" FT /product="metallo-beta-lactamase superfamily protein" FT /systematic_id="SpyM50160" FT misc_feature 180739..181326 FT /colour=9 FT /domain="HMMPfam:PF00753;Metallo-beta-lactamase FT superfamily;6.1e-16;codon 18-213" FT /id="SpyM50160" FT /label=HMMPfam FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 6.1e-16" FT CDS 181467..181940 FT /MGAS10270_orthologue="MGAS10270_Spy0182" FT /MGAS10394_orthologue="M6_Spy0214" FT /MGAS10750_orthologue="MGAS10750_Spy0174" FT /MGAS2096_orthologue="MGAS2096_Spy0192" FT /MGAS315_orthologue="SpyM3_0153" FT /MGAS5005_orthologue="M5005_Spy0179" FT /MGAS6180_orthologue="M28_Spy0177" FT /MGAS8232_orthologue="spyM18_0196" FT /MGAS9429_orthologue="MGAS9429_Spy0182" FT /SSI_1_orthologue="SPs0158" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00157.out" FT /product="putative deaminase" FT /systematic_id="SpyM50161" FT misc_feature 181482..181784 FT /colour=9 FT /domain="HMMPfam:PF00383;Cytidine and deoxycytidylate FT deaminase;1.3e-31;codon 7-107" FT /id="SpyM50161" FT /label=HMMPfam FT /note="HMMPfam hit to PF00383, Cytidine and FT deoxycytidylate deaminase, score 1.3e-31" FT misc_feature 181635..181748 FT /colour=8 FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS complement(182595..183827) FT /EC_number="3.2.1.-" FT /M1_GAS_orthologue="SPy0210" FT /MGAS10270_orthologue="MGAS10270_Spy0183" FT /MGAS10394_orthologue="M6_Spy0215" FT /MGAS10750_orthologue="MGAS10750_Spy0175" FT /MGAS2096_orthologue="MGAS2096_Spy0193" FT /MGAS315_orthologue="SpyM3_0154" FT /MGAS5005_orthologue="M5005_Spy0180" FT /MGAS6180_orthologue="M28_Spy0178" FT /MGAS8232_orthologue="spyM18_0197" FT /MGAS9429_orthologue="MGAS9429_Spy0183" FT /SSI_1_orthologue="SPs0159" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00158.out" FT /product="putative lipoprotein" FT /systematic_id="SpyM50162" FT misc_feature complement(183726..183827) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.522" FT /colour=3 FT /coord="34,35" FT /id="SpyM50162" FT /note="Signal peptide predicted for SpyM50162 by SignalP FT 2.0 HMM (Signal peptide probability 0.975) with cleavage FT site probability 0.522 between residues 34 and 35" FT /signal="0.975" FT /type="signalp" FT misc_feature complement(183753..183785) FT /colour=8 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 183869..183976 FT /MGAS10270_orthologue="MGAS10270_Spy0184" FT /MGAS10394_orthologue="M6_Spy0216" FT /MGAS10750_orthologue="MGAS10750_Spy0176" FT /MGAS2096_orthologue="MGAS2096_Spy0194" FT /MGAS5005_orthologue="M5005_Spy0181" FT /MGAS6180_orthologue="M28_Spy0179" FT /SSI_1_orthologue="SPs0160" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00159.out" FT /note="Doubtful CDS" FT /product="hypothetical protein" FT /systematic_id="SpyM50163" FT misc_RNA 184026..184127 FT /domain="Rfam:RF00169;SRP_bact;Score=61.20;positions 1 to FT 59" FT /note="Bacterial signal recognition particle RNA (RF00169) FT as predicted by Rfam, score 61.20" FT CDS complement(184223..185221) FT /class="5.1.4" FT /cluster="Spy_40:0000 9" FT /colour=12 FT /fasta_file="fasta/SP_new.tab.seq.00160.out" FT /product="insertion sequence IS1239 putative transposase" FT /similarity="fasta; with=UniProt:Q54534 (EMBL:SP11799); FT Streptococcus pyogenes.; Insertion sequence IS1239 FT putative transposase.; length=326; id 98.452%; ungapped id FT 98.452%; E()=3.7e-124; 323 aa overlap; query 1-323; FT subject 1-323" FT /systematic_id="SpyM50164" FT CDS join(184227..184235,185322..186017) FT /M1_GAS_orthologue="SPy0212" FT /MGAS10270_orthologue="MGAS10270_Spy0185" FT /MGAS2096_orthologue="MGAS2096_Spy0195" FT /MGAS315_orthologue="speG" FT /MGAS5005_orthologue="M5005_Spy0182" FT /MGAS6180_orthologue="M28_Spy0180" FT /MGAS8232_orthologue="speG" FT /MGAS9429_orthologue="MGAS9429_Spy0184" FT /SSI_1_orthologue="SPs0161" FT /class="5.1.5" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.00161.out" FT /gene="speG" FT /note="CDS is disrupted by the insertion of an IS element FT after codon 3" FT /product="exotoxin G precursor (pseudogene)" FT /pseudo FT /systematic_id="SpyM50165" FT repeat_unit complement(184236..184249) FT /colour=2 FT /note="direct repeat" FT repeat_region complement(184252..185321) FT /colour=0 FT /note="IS1239" FT misc_feature complement(184277..184714) FT /colour=9 FT /domain="HMMPfam:PF00665;Integrase core FT domain;3.9e-18;codon 170-315" FT /id="SpyM50164" FT /label=HMMPfam FT /note="HMMPfam hit to PF00665, Integrase core domain, FT score 3.9e-18" FT misc_feature complement(185075..185140) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1555.000, SD 4.48 at aa 28-49, sequence FT RSNREIARLLGKAPQTIHNEIK" FT repeat_unit complement(185322..185335) FT /colour=2 FT /note="direct repeat" FT misc_feature 185418..185663 FT /colour=9 FT /domain="HMMPfam:PF01123;Staphylococcal/Streptococcal FT toxin, O;2.8e-26;codon 42-123" FT /id="SpyM50165" FT /label=HMMPfam FT /note="HMMPfam hit to PF01123, FT Staphylococcal/Streptococcal toxin, O, score 2.8e-26" FT misc_feature 185682..186008 FT /colour=9 FT /domain="HMMPfam:PF02876;Staphylococcal/Streptococcal FT toxin, b;3.6e-19;codon 130-238" FT /id="SpyM50165" FT /label=HMMPfam FT /note="HMMPfam hit to PF02876, FT Staphylococcal/Streptococcal toxin, b, score 3.6e-19" FT CDS 186102..186221 FT /MGAS10270_orthologue="MGAS10270_Spy0186" FT /MGAS10394_orthologue="M6_Spy0218" FT /MGAS10750_orthologue="MGAS10750_Spy0178" FT /MGAS2096_orthologue="MGAS2096_Spy0196" FT /MGAS5005_orthologue="M5005_Spy0183" FT /MGAS6180_orthologue="M28_Spy0181" FT /MGAS8232_orthologue="spyM18_0202" FT /MGAS9429_orthologue="MGAS9429_Spy0185" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00162.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50166" FT misc_feature 186111..186164 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="4,21" FT /id="SpyM50166" FT /note="1 probable transmembrane helix predicted for FT SpyM50166 by TMHMM2.0 at aa 4-21" FT /type="TMHMM" FT CDS 186473..187822 FT /EC_number="5.3.1.9" FT /M1_GAS_orthologue="SPy0215" FT /MGAS10270_orthologue="MGAS10270_Spy0187" FT /MGAS10394_orthologue="M6_Spy0219" FT /MGAS10750_orthologue="MGAS10750_Spy0179" FT /MGAS2096_orthologue="MGAS2096_Spy0198" FT /MGAS315_orthologue="pgi" FT /MGAS5005_orthologue="M5005_Spy0185" FT /MGAS6180_orthologue="M28_Spy0183" FT /MGAS8232_orthologue="pgi" FT /MGAS9429_orthologue="MGAS9429_Spy0187" FT /SSI_1_orthologue="SPs0162" FT /class="3.5.5" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00163.out" FT /gene="pgi" FT /product="glucose-6-phosphate isomerase" FT /systematic_id="SpyM50167" FT misc_feature 186491..187810 FT /colour=9 FT /domain="HMMPfam:PF00342;Phosphoglucose FT isomerase;1.6e-147;codon 7-446" FT /id="SpyM50167" FT /label=HMMPfam FT /note="HMMPfam hit to PF00342, Phosphoglucose isomerase, FT score 1.6e-147" FT misc_feature 187079..187120 FT /colour=8 FT /note="PS00765 Phosphoglucose isomerase signature 1." FT CDS complement(188170..189678) FT /M1_GAS_orthologue="SPy0216" FT /MGAS10270_orthologue="MGAS10270_Spy0188" FT /MGAS10394_orthologue="M6_Spy0220" FT /MGAS2096_orthologue="MGAS2096_Spy0199" FT /MGAS315_orthologue="SpyM3_0157" FT /MGAS5005_orthologue="M5005_Spy0186" FT /MGAS6180_orthologue="M28_Spy0184" FT /MGAS8232_orthologue="spyM18_0205" FT /MGAS9429_orthologue="MGAS9429_Spy0188" FT /SSI_1_orthologue="SPs0163" FT /class="6.5.0" FT /cluster="Spy_40:0020 2" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00164.out" FT /product="putative regulatory protein-RofA related" FT /systematic_id="SpyM50168" FT misc_feature complement(188545..188577) FT /colour=8 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature complement(188617..189399) FT /colour=9 FT /domain="HMMPfam:PF07003;RofA transcriptional FT regulator;9.3e-152;codon 94-354" FT /id="SpyM50168" FT /label=HMMPfam FT /note="HMMPfam hit to PF07003, RofA transcriptional FT regulator, score 9.3e-152" FT misc_feature complement(188635..188682) FT /colour=8 FT /note="PS00225 Crystallins beta and gamma 'Greek key' FT motif signature." FT misc_feature complement(189307..189372) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 993.000, SD 2.57 at aa 103-124, sequence FT KSIAVYTRKQGISQSKAYRLIH" FT CDS 189983..190114 FT /SSI_1_orthologue="SPs0164" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00165.out" FT /note="Doubtful CDS. No significant database matches" FT /product="hypothetical protein" FT /systematic_id="SpyM50169" FT CDS 190231..190338 FT /MGAS10270_orthologue="MGAS10270_Spy0190" FT /MGAS10394_orthologue="M6_Spy0222" FT /MGAS10750_orthologue="MGAS10750_Spy0186" FT /MGAS2096_orthologue="MGAS2096_Spy0203" FT /MGAS5005_orthologue="M5005_Spy0190" FT /MGAS6180_orthologue="M28_Spy0185" FT /MGAS9429_orthologue="MGAS9429_Spy0192" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00166.out" FT /note="No significant database matches" FT /product="hypothetical protein" FT /systematic_id="SpyM50170" FT CDS 190366..191037 FT /MGAS10270_orthologue="MGAS10270_Spy0191" FT /MGAS10394_orthologue="M6_Spy0223" FT /MGAS10750_orthologue="MGAS10750_Spy0187" FT /MGAS2096_orthologue="MGAS2096_Spy0204" FT /MGAS315_orthologue="SpyM3_0159" FT /MGAS5005_orthologue="M5005_Spy0191" FT /MGAS6180_orthologue="M28_Spy0186" FT /MGAS8232_orthologue="spyM18_0208" FT /MGAS9429_orthologue="MGAS9429_Spy0193" FT /SSI_1_orthologue="SPs0165" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00167.out" FT /product="rhomboid family membrane protein" FT /systematic_id="SpyM50171" FT misc_feature 190366..190479 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.421" FT /colour=3 FT /coord="38,39" FT /id="SpyM50171" FT /note="Signal peptide predicted for SpyM50171 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.421 between residues 38 and 39" FT /signal="0.999" FT /type="signalp" FT misc_feature join(190402..190470,190546..190614,190651..190710,190720..190788,190822..190881,190891..190959,190978..191031) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /coord="61,83" FT /coord="96,115" FT /coord="119,141" FT /coord="153,172" FT /coord="176,198" FT /coord="205,222" FT /id="SpyM50171" FT /note="7 probable transmembrane helices predicted for FT SpyM50171 by TMHMM2.0 at aa 13-35, 61-83, 96-115, 119-141, FT 153-172, 176-198 and 205-222" FT /type="TMHMM" FT misc_feature 190519..190947 FT /colour=9 FT /domain="HMMPfam:PF01694;Rhomboid family;1.7e-44;codon FT 52-194" FT /id="SpyM50171" FT /label=HMMPfam FT /note="HMMPfam hit to PF01694, Rhomboid family, score FT 1.7e-44" FT misc_feature 190798..190821 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(191136..192035) FT /EC_number="2.7.7.9" FT /M1_GAS_orthologue="SPy0224" FT /MGAS10270_orthologue="MGAS10270_Spy0192" FT /MGAS10394_orthologue="M6_Spy0224" FT /MGAS10750_orthologue="MGAS10750_Spy0188" FT /MGAS2096_orthologue="MGAS2096_Spy0205" FT /MGAS315_orthologue="hasC.2" FT /MGAS5005_orthologue="M5005_Spy0192" FT /MGAS6180_orthologue="M28_Spy0187" FT /MGAS8232_orthologue="hasC2" FT /MGAS9429_orthologue="MGAS9429_Spy0194" FT /SSI_1_orthologue="SPs0166" FT /class="4.1.4" FT /cluster="Spy_40:0026 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00168.out" FT /gene="hasC2" FT /note="Similar to SpyM51826, 90.268% identity (90.268% FT ungapped) in 298 aa overlap" FT /product="UTP--glucose-1-phosphate uridylyltransferase 2" FT /systematic_id="SpyM50172" FT misc_feature complement(191211..192020) FT /colour=9 FT /domain="HMMPfam:PF00483;Nucleotidyl FT transferase;5.6e-21;codon 8-277" FT /id="SpyM50172" FT /label=HMMPfam FT /note="HMMPfam hit to PF00483, Nucleotidyl transferase, FT score 5.6e-21" FT misc_feature complement(191958..192035) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.960" FT /colour=3 FT /coord="28,29" FT /id="SpyM50172" FT /note="Signal peptide predicted for SpyM50172 by SignalP FT 2.0 HMM (Signal peptide probability 0.968) with cleavage FT site probability 0.960 between residues 28 and 29" FT /signal="0.968" FT /type="signalp" FT CDS complement(192068..193084) FT /EC_number="1.1.1.94" FT /M1_GAS_orthologue="SPy0226" FT /MGAS10270_orthologue="MGAS10270_Spy0193" FT /MGAS10394_orthologue="M6_Spy0225" FT /MGAS10750_orthologue="MGAS10750_Spy0189" FT /MGAS2096_orthologue="MGAS2096_Spy0206" FT /MGAS315_orthologue="gpdA" FT /MGAS6180_orthologue="M28_Spy0188" FT /MGAS8232_orthologue="gpdA" FT /MGAS9429_orthologue="MGAS9429_Spy0195" FT /SSI_1_orthologue="SPs0167" FT /class="2.2.07" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00169.out" FT /gene="gpsA" FT /gene="glyC" FT /product="glycerol-3-phosphate dehydrogenase [NAD(P)+]" FT /systematic_id="SpyM50173" FT misc_feature complement(192107..192541) FT /colour=9 FT /domain="HMMPfam:PF07479;NAD-dependent FT glycerol-3-phosphate deh;4.9e-72;codon 182-326" FT /id="SpyM50173" FT /label=HMMPfam FT /note="HMMPfam hit to PF07479, NAD-dependent FT glycerol-3-phosphate deh, score 4.9e-72" FT misc_feature complement(192542..193078) FT /colour=9 FT /domain="HMMPfam:PF01210;NAD-dependent FT glycerol-3-phosphate deh;5.9e-61;codon 3-181" FT /id="SpyM50173" FT /label=HMMPfam FT /note="HMMPfam hit to PF01210, NAD-dependent FT glycerol-3-phosphate deh, score 5.9e-61" FT CDS 193382..193831 FT /MGAS10270_orthologue="MGAS10270_Spy0194" FT /MGAS10394_orthologue="M6_Spy0226" FT /MGAS10750_orthologue="MGAS10750_Spy0190" FT /MGAS2096_orthologue="MGAS2096_Spy0207" FT /MGAS315_orthologue="SpyM3_0162" FT /MGAS5005_orthologue="M5005_Spy0195" FT /MGAS6180_orthologue="M28_Spy0189" FT /MGAS8232_orthologue="spyM18_0213" FT /MGAS9429_orthologue="MGAS9429_Spy0196" FT /SSI_1_orthologue="SPs0169" FT /class="6.3.07" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00170.out" FT /product="MarR family regulatory protein" FT /systematic_id="SpyM50174" FT misc_feature 193472..193789 FT /colour=9 FT /domain="HMMPfam:PF01047;MarR family;1.2e-09;codon 31-136" FT /id="SpyM50174" FT /label=HMMPfam FT /note="HMMPfam hit to PF01047, MarR family, score 1.2e-09" FT CDS 193824..195530 FT /M1_GAS_orthologue="SPy0229" FT /MGAS10270_orthologue="MGAS10270_Spy0195" FT /MGAS10394_orthologue="M6_Spy0227" FT /MGAS10750_orthologue="MGAS10750_Spy0191" FT /MGAS2096_orthologue="MGAS2096_Spy0208" FT /MGAS315_orthologue="SpyM3_0163" FT /MGAS5005_orthologue="M5005_Spy0196" FT /MGAS6180_orthologue="M28_Spy0190" FT /MGAS8232_orthologue="spyM18_0214" FT /MGAS9429_orthologue="MGAS9429_Spy0197" FT /SSI_1_orthologue="SPs0170" FT /class="1.5.0" FT /cluster="Spy_40:0004 4" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00171.out" FT /product="ABC transporter ATP-binding membrane protein" FT /systematic_id="SpyM50175" FT misc_feature 193824..193943 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.321" FT /colour=3 FT /coord="40,41" FT /id="SpyM50175" FT /note="Signal peptide predicted for SpyM50175 by SignalP FT 2.0 HMM (Signal peptide probability 0.600) with cleavage FT site probability 0.321 between residues 40 and 41" FT /signal="0.600" FT /type="signalp" FT misc_feature join(193857..193925,193989..194048,194109..194162,194190..194258,194277..194336,194511..194579,194616..194684) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="12,34" FT /coord="56,75" FT /coord="96,113" FT /coord="123,145" FT /coord="152,171" FT /coord="230,252" FT /coord="265,287" FT /id="SpyM50175" FT /note="7 probable transmembrane helices predicted for FT SpyM50175 by TMHMM2.0 at aa 12-34, 56-75, 96-113, 123-145, FT 152-171, 230-252 and 265-287" FT /type="TMHMM" FT misc_feature 193860..194672 FT /colour=9 FT /domain="HMMPfam:PF00664;ABC transporter transmembrane FT region;1.1e-24;codon 13-283" FT /id="SpyM50175" FT /label=HMMPfam FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 1.1e-24" FT misc_feature 194883..195437 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;2.5e-51;codon FT 354-538" FT /id="SpyM50175" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.5e-51" FT misc_feature 194904..194927 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 195216..195260 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS 195533..197317 FT /M1_GAS_orthologue="SPy0230" FT /MGAS10270_orthologue="MGAS10270_Spy0196" FT /MGAS10394_orthologue="M6_Spy0228" FT /MGAS10750_orthologue="MGAS10750_Spy0192" FT /MGAS2096_orthologue="MGAS2096_Spy0209" FT /MGAS315_orthologue="SpyM3_0164" FT /MGAS5005_orthologue="M5005_Spy0197" FT /MGAS6180_orthologue="M28_Spy0191" FT /MGAS8232_orthologue="spyM18_0215" FT /MGAS9429_orthologue="MGAS9429_Spy0198" FT /SSI_1_orthologue="SPs0171" FT /class="1.5.0" FT /cluster="Spy_40:0004 4" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00172.out" FT /product="ABC transporter ATP-binding membrane protein" FT /systematic_id="SpyM50176" FT misc_feature 195533..195652 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.339" FT /colour=3 FT /coord="41,42" FT /id="SpyM50176" FT /note="Signal peptide predicted for SpyM50176 by SignalP FT 2.0 HMM (Signal peptide probability 0.914) with cleavage FT site probability 0.339 between residues 41 and 42" FT /signal="0.914" FT /type="signalp" FT misc_feature join(195578..195631,195764..195832,195980..196039,196052..196120,196307..196375) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="17,34" FT /coord="79,101" FT /coord="151,170" FT /coord="175,197" FT /coord="260,282" FT /id="SpyM50176" FT /note="5 probable transmembrane helices predicted for FT SpyM50176 by TMHMM2.0 at aa 17-34, 79-101, 151-170, FT 175-197 and 260-282" FT /type="TMHMM" FT misc_feature 195620..196462 FT /colour=9 FT /domain="HMMPfam:PF00664;ABC transporter transmembrane FT region;5.7e-30;codon 31-311" FT /id="SpyM50176" FT /label=HMMPfam FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 5.7e-30" FT misc_feature 195635..195658 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 196673..197227 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;9.7e-56;codon FT 382-566" FT /id="SpyM50176" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 9.7e-56" FT misc_feature 196694..196717 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 197435..198202 FT /M1_GAS_orthologue="SPy0233" FT /MGAS10270_orthologue="MGAS10270_Spy0197" FT /MGAS10394_orthologue="M6_Spy0229" FT /MGAS10750_orthologue="MGAS10750_Spy0193" FT /MGAS2096_orthologue="MGAS2096_Spy0210" FT /MGAS315_orthologue="SpyM3_0165" FT /MGAS5005_orthologue="M5005_Spy0198" FT /MGAS6180_orthologue="M28_Spy0192" FT /MGAS8232_orthologue="spyM18_0218" FT /MGAS9429_orthologue="MGAS9429_Spy0199" FT /SSI_1_orthologue="SPs0172" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00173.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50177" FT misc_feature 197549..198148 FT /colour=9 FT /domain="HMMPfam:PF02677;Uncharacterized BCR, FT COG1636;4.2e-47;codon 39-238" FT /id="SpyM50177" FT /label=HMMPfam FT /note="HMMPfam hit to PF02677, Uncharacterized BCR, FT COG1636, score 4.2e-47" FT CDS 198312..198758 FT /EC_number="3.6.1.23" FT /M1_GAS_orthologue="SPy0235" FT /MGAS10270_orthologue="MGAS10270_Spy0198" FT /MGAS10394_orthologue="M6_Spy0230" FT /MGAS10750_orthologue="MGAS10750_Spy0194" FT /MGAS315_orthologue="dut" FT /MGAS5005_orthologue="M5005_Spy0199" FT /MGAS6180_orthologue="M28_Spy0193" FT /MGAS8232_orthologue="dut" FT /MGAS9429_orthologue="MGAS9429_Spy0200" FT /SSI_1_orthologue="SPs0173" FT /class="3.7.2" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00174.out" FT /product="deoxyuridine 5'-triphosphate FT nucleotidohydrolase" FT /systematic_id="SpyM50178" FT misc_feature 198354..198752 FT /colour=9 FT /domain="HMMPfam:PF00692;dUTPase;6.1e-17;codon 15-147" FT /id="SpyM50178" FT /label=HMMPfam FT /note="HMMPfam hit to PF00692, dUTPase, score 6.1e-17" FT CDS 198839..200200 FT /M1_GAS_orthologue="SPy0236" FT /MGAS10270_orthologue="MGAS10270_Spy0199" FT /MGAS10394_orthologue="M6_Spy0231" FT /MGAS10750_orthologue="MGAS10750_Spy0195" FT /MGAS2096_orthologue="MGAS2096_Spy0213" FT /MGAS315_orthologue="radA" FT /MGAS5005_orthologue="M5005_Spy0200" FT /MGAS6180_orthologue="M28_Spy0194" FT /MGAS8232_orthologue="radA" FT /MGAS9429_orthologue="MGAS9429_Spy0201" FT /SSI_1_orthologue="SPs0174" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00175.out" FT /gene="sms" FT /gene="radA" FT /product="putative DNA repair protein" FT /systematic_id="SpyM50179" FT misc_feature 199121..199144 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 200388..200885 FT /EC_number="4.2.1.1" FT /M1_GAS_orthologue="SPy0237" FT /MGAS10270_orthologue="MGAS10270_Spy0200" FT /MGAS10394_orthologue="M6_Spy0232" FT /MGAS10750_orthologue="MGAS10750_Spy0196" FT /MGAS315_orthologue="SpyM3_0168" FT /MGAS5005_orthologue="M5005_Spy0201" FT /MGAS6180_orthologue="M28_Spy0195" FT /MGAS8232_orthologue="spyM18_0221" FT /MGAS9429_orthologue="MGAS9429_Spy0202" FT /SSI_1_orthologue="SPs0175" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00176.out" FT /product="putative carbonic anhydrase" FT /systematic_id="SpyM50180" FT misc_feature 200457..200879 FT /colour=9 FT /domain="HMMPfam:PF00484;Carbonic anhydrase;9.1e-16;codon FT 25-165" FT /id="SpyM50180" FT /label=HMMPfam FT /note="HMMPfam hit to PF00484, Carbonic anhydrase, score FT 9.1e-16" FT CDS 201016..201726 FT /M1_GAS_orthologue="SPy0238" FT /MGAS10270_orthologue="MGAS10270_Spy0201" FT /MGAS10394_orthologue="M6_Spy0233" FT /MGAS10750_orthologue="MGAS10750_Spy0197" FT /MGAS2096_orthologue="MGAS2096_Spy0216" FT /MGAS315_orthologue="SpyM3_0169" FT /MGAS5005_orthologue="M5005_Spy0202" FT /MGAS6180_orthologue="M28_Spy0196" FT /MGAS8232_orthologue="spyM18_0222" FT /MGAS9429_orthologue="MGAS9429_Spy0203" FT /SSI_1_orthologue="SPs0176" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00177.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50181" FT misc_feature 201031..201708 FT /colour=9 FT /domain="HMMPfam:PF01987;Protein of unknown function FT DUF124;3e-91;codon 18-243" FT /id="SpyM50181" FT /label=HMMPfam FT /note="HMMPfam hit to PF01987, Protein of unknown function FT DUF124, score 3e-91" FT CDS 201908..203353 FT /EC_number="6.1.1.17" FT /M1_GAS_orthologue="SPy0239" FT /MGAS10270_orthologue="MGAS10270_Spy0202" FT /MGAS10394_orthologue="M6_Spy0234" FT /MGAS10750_orthologue="MGAS10750_Spy0198" FT /MGAS315_orthologue="gluS" FT /MGAS5005_orthologue="M5005_Spy0203" FT /MGAS6180_orthologue="M28_Spy0197" FT /MGAS8232_orthologue="gluS" FT /MGAS9429_orthologue="MGAS9429_Spy0204" FT /SSI_1_orthologue="SPs0177" FT /class="2.2.01" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00178.out" FT /gene="gltX" FT /product="glutamyl-tRNA synthetase" FT /systematic_id="SpyM50182" FT misc_feature 201917..202885 FT /colour=9 FT /domain="HMMPfam:PF00749;tRNA synthetases class I (E and FT Q), cata;2.7e-159;codon 4-326" FT /id="SpyM50182" FT /label=HMMPfam FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q), cata, score 2.7e-159" FT misc_feature 201938..201973 FT /colour=8 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 203748..205094 FT /EC_number="2.7.3.-" FT /M1_GAS_orthologue="SPy0242" FT /MGAS10270_orthologue="MGAS10270_Spy0204" FT /MGAS10394_orthologue="M6_Spy0235" FT /MGAS10750_orthologue="MGAS10750_Spy0199" FT /MGAS2096_orthologue="MGAS2096_Spy0219" FT /MGAS315_orthologue="SpyM3_0171" FT /MGAS5005_orthologue="M5005_Spy0204" FT /MGAS6180_orthologue="M28_Spy0198" FT /MGAS8232_orthologue="spyM18_0224" FT /MGAS9429_orthologue="MGAS9429_Spy0205" FT /SSI_1_orthologue="SPs0178" FT /class="6.1.1" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00179.out" FT /gene="fasB" FT /product="sensor histidine kinase" FT /systematic_id="SpyM50183" FT misc_feature join(203784..203852,203880..203948,203982..204050,204093..204161,204222..204290,204333..204392) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /coord="45,67" FT /coord="79,101" FT /coord="116,138" FT /coord="159,181" FT /coord="196,215" FT /id="SpyM50183" FT /note="6 probable transmembrane helices predicted for FT SpyM50183 by TMHMM2.0 at aa 13-35, 45-67, 79-101, 116-138, FT 159-181 and 196-215" FT /type="TMHMM" FT misc_feature 204651..204698 FT /colour=8 FT /note="PS00012 Phosphopantetheine attachment site." FT misc_feature 204762..205079 FT /colour=9 FT /domain="HMMPfam:PF02518;Histidine kinase-, DNA gyrase B-, FT and HSP90;1.3e-06;codon 339-444" FT /id="SpyM50183" FT /label=HMMPfam FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90, score 1.3e-06" FT CDS join(205091..205588,205591..206373) FT /EC_number="2.7.3.-" FT /MGAS10270_orthologue="MGAS10270_Spy0205" FT /MGAS10750_orthologue="MGAS10750_Spy0200" FT /MGAS2096_orthologue="MGAS2096_Spy0220" FT /MGAS315_orthologue="SpyM3_0173" FT /MGAS315_orthologue="SpyM3_0172" FT /MGAS5005_orthologue="M5005_Spy0205" FT /MGAS6180_orthologue="M28_Spy0199" FT /MGAS9429_orthologue="MGAS9429_Spy0206" FT /class="6.1.1" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01825.out" FT /note="Previously sequenced as Streptococcus pyogenes FT MGAS10394 putative histidine kinase FasC (ec 2.7.3.-). FT UniProt:Q5XDZ2 (EMBL:CP000003) (EC 2.7.3.- aa) fasta FT scores: E()=2.7e-150, 99.532% id in 427 aa. CDS contains a FT frameshift mutation after codon 166. Frameshift occurs at FT a poly T pentamer" FT /product="putative sensor kinase (pseudogene)" FT /pseudo FT /similarity="fasta; with=UniProt:Q5XDZ2 (EMBL:CP000003); FT Streptococcus pyogenes MGAS10394.; FasC (EC 2.7.3.-).; FT length=EC 2.7.3.-; id 99.532%; ungapped id 99.765%; FT E()=2.7e-150; 427 aa overlap; query 1-426; subject 1-427" FT /systematic_id="SpyM50184" FT misc_feature join(205100..205159,205193..205288,205331..205399,205436..205504,205547..205600) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="4,23" FT /coord="35,66" FT /coord="81,103" FT /coord="116,138" FT /coord="153,170" FT /id="SpyM50184" FT /note="5 probable transmembrane helices predicted for FT SpyM50184 by TMHMM2.0 at aa 4-23, 35-66, 81-103, 116-138 FT and 153-170" FT /type="TMHMM" FT CDS 206377..207117 FT /M1_GAS_orthologue="SPy0245" FT /MGAS10270_orthologue="MGAS10270_Spy0206" FT /MGAS10394_orthologue="M6_Spy0237" FT /MGAS10750_orthologue="MGAS10750_Spy0201" FT /MGAS2096_orthologue="MGAS2096_Spy0221" FT /MGAS315_orthologue="SpyM3_0174" FT /MGAS5005_orthologue="M5005_Spy0206" FT /MGAS6180_orthologue="M28_Spy0200" FT /MGAS8232_orthologue="spyM18_0227" FT /MGAS9429_orthologue="MGAS9429_Spy0207" FT /SSI_1_orthologue="SPs0179" FT /class="6.1.2" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00182.out" FT /gene="fasA" FT /note="Possible alternate translational start site" FT /product="response regulator protein" FT /systematic_id="SpyM50186" FT misc_feature 206380..206769 FT /colour=9 FT /domain="HMMPfam:PF00072;Response regulator receiver FT domain;1.4e-05;codon 2-131" FT /id="SpyM50186" FT /label=HMMPfam FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.4e-05" FT misc_feature 206821..207105 FT /colour=9 FT /domain="HMMPfam:PF04397;LytTr DNA-binding FT domain;1.2e-25;codon 149-243" FT /id="SpyM50186" FT /label=HMMPfam FT /note="HMMPfam hit to PF04397, LytTr DNA-binding domain, FT score 1.2e-25" FT misc_RNA 207230..207314 FT /note="Region contains putative fasX regulatory RNA" FT CDS 207657..208016 FT /EC_number="3.1.26.5" FT /M1_GAS_orthologue="SPy0246" FT /MGAS10270_orthologue="MGAS10270_Spy0207" FT /MGAS10394_orthologue="M6_Spy0238" FT /MGAS10750_orthologue="MGAS10750_Spy0202" FT /MGAS2096_orthologue="MGAS2096_Spy0222" FT /MGAS315_orthologue="rnpA" FT /MGAS5005_orthologue="M5005_Spy0207" FT /MGAS6180_orthologue="M28_Spy0201" FT /MGAS8232_orthologue="rnpA" FT /MGAS9429_orthologue="MGAS9429_Spy0208" FT /SSI_1_orthologue="SPs0180" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00183.out" FT /gene="rnpA" FT /product="ribonuclease P protein component" FT /systematic_id="SpyM50187" FT misc_feature 207657..207977 FT /colour=9 FT /domain="HMMPfam:PF00825;Ribonuclease P;3.3e-33;codon FT 1-107" FT /id="SpyM50187" FT /label=HMMPfam FT /note="HMMPfam hit to PF00825, Ribonuclease P, score FT 3.3e-33" FT misc_feature 207699..207722 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 208000..208809 FT /M1_GAS_orthologue="SPy0247" FT /MGAS10270_orthologue="MGAS10270_Spy0208" FT /MGAS10394_orthologue="M6_Spy0239" FT /MGAS10750_orthologue="MGAS10750_Spy0203" FT /MGAS2096_orthologue="MGAS2096_Spy0223" FT /MGAS315_orthologue="SpyM3_0176" FT /MGAS5005_orthologue="M5005_Spy0208" FT /MGAS6180_orthologue="M28_Spy0202" FT /MGAS8232_orthologue="spyM18_0229" FT /MGAS9429_orthologue="MGAS9429_Spy0209" FT /SSI_1_orthologue="SPs0181" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00184.out" FT /note="Possible alternate translational start site" FT /product="membrane protein OxaA 1 precursor" FT /systematic_id="SpyM50188" FT misc_feature 208000..208086 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.571" FT /colour=3 FT /coord="29,30" FT /id="SpyM50188" FT /note="Signal peptide predicted for SpyM50188 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.571 between residues 29 and 30" FT /signal="1.000" FT /type="signalp" FT misc_feature join(208018..208077,208135..208203,208366..208434,208492..208560,208597..208665) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /coord="46,68" FT /coord="123,145" FT /coord="165,187" FT /coord="200,222" FT /id="SpyM50188" FT /note="5 probable transmembrane helices predicted for FT SpyM50188 by TMHMM2.0 at aa 7-26, 46-68, 123-145, 165-187 FT and 200-222" FT /type="TMHMM" FT misc_feature 208150..208716 FT /colour=9 FT /domain="HMMPfam:PF02096;60Kd inner membrane FT protein;6.1e-55;codon 51-239" FT /id="SpyM50188" FT /label=HMMPfam FT /note="HMMPfam hit to PF02096, 60Kd inner membrane FT protein, score 6.1e-55" FT CDS 208821..209735 FT /M1_GAS_orthologue="SPy0248" FT /MGAS10270_orthologue="MGAS10270_Spy0209" FT /MGAS10394_orthologue="M6_Spy0240" FT /MGAS10750_orthologue="MGAS10750_Spy0204" FT /MGAS315_orthologue="SpyM3_0177" FT /MGAS5005_orthologue="M5005_Spy0209" FT /MGAS6180_orthologue="M28_Spy0203" FT /MGAS8232_orthologue="spyM18_0230" FT /MGAS9429_orthologue="MGAS9429_Spy0210" FT /SSI_1_orthologue="SPs0182" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00185.out" FT /product="putative ssDNA-binding protein" FT /systematic_id="SpyM50189" FT misc_feature 209562..209729 FT /colour=9 FT /domain="HMMPfam:PF01424;R3H domain;1.2e-11;codon 248-303" FT /id="SpyM50189" FT /label=HMMPfam FT /note="HMMPfam hit to PF01424, R3H domain, score 1.2e-11" FT CDS 210050..210184 FT /M1_GAS_orthologue="SPy0250" FT /MGAS10270_orthologue="MGAS10270_Spy0210" FT /MGAS10394_orthologue="M6_Spy0242" FT /MGAS10750_orthologue="MGAS10750_Spy0205" FT /MGAS2096_orthologue="MGAS2096_Spy0228" FT /MGAS315_orthologue="rpmH" FT /MGAS5005_orthologue="M5005_Spy0211" FT /MGAS6180_orthologue="M28_Spy0205" FT /MGAS8232_orthologue="rpmH" FT /MGAS9429_orthologue="MGAS9429_Spy0212" FT /SSI_1_orthologue="SPs0183" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00186.out" FT /gene="rpmH" FT /product="50S ribosomal protein L34" FT /systematic_id="SpyM50190" FT misc_feature 210050..210181 FT /colour=9 FT /domain="HMMPfam:PF00468;Ribosomal protein FT L34;1.7e-19;codon 1-44" FT /id="SpyM50190" FT /label=HMMPfam FT /note="HMMPfam hit to PF00468, Ribosomal protein L34, FT score 1.7e-19" FT misc_feature 210053..210112 FT /colour=8 FT /note="PS00784 Ribosomal protein L34 signature." FT CDS 210458..211162 FT /EC_number="5.1.3.9" FT /M1_GAS_orthologue="SPy0251" FT /MGAS10270_orthologue="MGAS10270_Spy0211" FT /MGAS10394_orthologue="M6_Spy0243" FT /MGAS10750_orthologue="MGAS10750_Spy0206" FT /MGAS2096_orthologue="MGAS2096_Spy0229" FT /MGAS315_orthologue="SpyM3_0179" FT /MGAS5005_orthologue="M5005_Spy0212" FT /MGAS6180_orthologue="M28_Spy0206" FT /MGAS8232_orthologue="spyM18_0233" FT /MGAS9429_orthologue="MGAS9429_Spy0213" FT /SSI_1_orthologue="SPs0184" FT /class="3.4.1" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00187.out" FT /product="putative N-acetylmannosamine-6-phosphate FT 2-epimerase" FT /systematic_id="SpyM50191" FT misc_feature 210569..211159 FT /colour=9 FT /domain="HMMPfam:PF04131;Putative FT N-acetylmannosamine-6-phosphate epi;9.8e-139;codon 38-234" FT /id="SpyM50191" FT /label=HMMPfam FT /note="HMMPfam hit to PF04131, Putative FT N-acetylmannosamine-6-phosphate epi, score 9.8e-139" FT CDS 211211..212530 FT /M1_GAS_orthologue="SPy0252" FT /MGAS10270_orthologue="MGAS10270_Spy0212" FT /MGAS10394_orthologue="M6_Spy0244" FT /MGAS10750_orthologue="MGAS10750_Spy0207" FT /MGAS2096_orthologue="MGAS2096_Spy0231" FT /MGAS315_orthologue="SpyM3_0180" FT /MGAS5005_orthologue="M5005_Spy0213" FT /MGAS6180_orthologue="M28_Spy0207" FT /MGAS8232_orthologue="spyM18_0234" FT /MGAS9429_orthologue="MGAS9429_Spy0214" FT /SSI_1_orthologue="SPs0185" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00188.out" FT /product="extracellular solute-binding lipoprotein" FT /systematic_id="SpyM50192" FT misc_feature 211211..211306 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.389" FT /colour=3 FT /coord="32,33" FT /id="SpyM50192" FT /note="Signal peptide predicted for SpyM50192 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.389 between residues 32 and 33" FT /signal="1.000" FT /type="signalp" FT misc_feature 211226..212272 FT /colour=9 FT /domain="HMMPfam:PF01547;Bacterial extracellular FT solute-binding prot;5.1e-23;codon 6-354" FT /id="SpyM50192" FT /label=HMMPfam FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding prot, score 5.1e-23" FT misc_feature 211244..211276 FT /colour=8 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 212635..213522 FT /M1_GAS_orthologue="SPy0254" FT /MGAS10270_orthologue="MGAS10270_Spy0214" FT /MGAS10394_orthologue="M6_Spy0246" FT /MGAS10750_orthologue="MGAS10750_Spy0208" FT /MGAS2096_orthologue="MGAS2096_Spy0232" FT /MGAS315_orthologue="SpyM3_0182" FT /MGAS5005_orthologue="M5005_Spy0214" FT /MGAS6180_orthologue="M28_Spy0208" FT /MGAS8232_orthologue="spyM18_0236" FT /MGAS9429_orthologue="MGAS9429_Spy0215" FT /SSI_1_orthologue="SPs0187" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00189.out" FT /product="putative transport system permease" FT /systematic_id="SpyM50193" FT misc_feature 212635..212742 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.406" FT /colour=3 FT /coord="36,37" FT /id="SpyM50193" FT /note="Signal peptide predicted for SpyM50193 by SignalP FT 2.0 HMM (Signal peptide probability 0.959) with cleavage FT site probability 0.406 between residues 36 and 37" FT /signal="0.959" FT /type="signalp" FT misc_feature join(212668..212736,212842..212910,212947..213015,213106..213174,213424..213492) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="12,34" FT /coord="70,92" FT /coord="105,127" FT /coord="158,180" FT /coord="264,286" FT /id="SpyM50193" FT /note="5 probable transmembrane helices predicted for FT SpyM50193 by TMHMM2.0 at aa 12-34, 70-92, 105-127, 158-180 FT and 264-286" FT /type="TMHMM" FT misc_feature 212830..213519 FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;5.6e-13;codon 66-295" FT /id="SpyM50193" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 5.6e-13" FT CDS 213535..214365 FT /M1_GAS_orthologue="SPy0255" FT /MGAS10270_orthologue="MGAS10270_Spy0215" FT /MGAS10394_orthologue="M6_Spy0247" FT /MGAS10750_orthologue="MGAS10750_Spy0209" FT /MGAS2096_orthologue="MGAS2096_Spy0233" FT /MGAS315_orthologue="SpyM3_0183" FT /MGAS5005_orthologue="M5005_Spy0215" FT /MGAS6180_orthologue="M28_Spy0209" FT /MGAS8232_orthologue="spyM18_0237" FT /MGAS9429_orthologue="MGAS9429_Spy0216" FT /SSI_1_orthologue="SPs0188" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00190.out" FT /product="putative transport system permease" FT /systematic_id="SpyM50194" FT misc_feature 213535..213648 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.482" FT /colour=3 FT /coord="38,39" FT /id="SpyM50194" FT /note="Signal peptide predicted for SpyM50194 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.482 between residues 38 and 39" FT /signal="0.999" FT /type="signalp" FT misc_feature join(213568..213636,213760..213828,213853..213921,213934..214002,214078..214146,214249..214317) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="12,34" FT /coord="76,98" FT /coord="107,129" FT /coord="134,156" FT /coord="182,204" FT /coord="239,261" FT /id="SpyM50194" FT /note="6 probable transmembrane helices predicted for FT SpyM50194 by TMHMM2.0 at aa 12-34, 76-98, 107-129, FT 134-156, 182-204 and 239-261" FT /type="TMHMM" FT misc_feature 213748..214347 FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;1.1e-21;codon 72-271" FT /id="SpyM50194" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 1.1e-21" FT CDS 214522..215184 FT /M1_GAS_orthologue="SPy0256" FT /MGAS10270_orthologue="MGAS10270_Spy0216" FT /MGAS10394_orthologue="M6_Spy0248" FT /MGAS10750_orthologue="MGAS10750_Spy0211" FT /MGAS2096_orthologue="MGAS2096_Spy0234" FT /MGAS315_orthologue="SpyM3_0184" FT /MGAS5005_orthologue="M5005_Spy0216" FT /MGAS6180_orthologue="M28_Spy0210" FT /MGAS8232_orthologue="spyM18_0239" FT /MGAS9429_orthologue="MGAS9429_Spy0217" FT /SSI_1_orthologue="SPs0189" FT /class="1.5.3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00191.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50195" FT misc_feature join(214591..214659,214777..214833,214846..214914,214975..215043,215071..215139) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="24,46" FT /coord="86,104" FT /coord="109,131" FT /coord="152,174" FT /coord="184,206" FT /id="SpyM50195" FT /note="5 probable transmembrane helices predicted for FT SpyM50195 by TMHMM2.0 at aa 24-46, 86-104, 109-131, FT 152-174 and 184-206" FT /type="TMHMM" FT misc_feature 214606..214824 FT /colour=9 FT /domain="HMMPfam:PF04854;Protein of unknown function, FT DUF624;5.8e-26;codon 29-101" FT /id="SpyM50195" FT /label=HMMPfam FT /note="HMMPfam hit to PF04854, Protein of unknown FT function, DUF624, score 5.8e-26" FT misc_feature 215017..215091 FT /colour=8 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 215196..216110 FT /EC_number="4.1.3.3" FT /M1_GAS_orthologue="SPy0257" FT /MGAS10270_orthologue="MGAS10270_Spy0217" FT /MGAS10394_orthologue="M6_Spy0249" FT /MGAS10750_orthologue="MGAS10750_Spy0212" FT /MGAS2096_orthologue="MGAS2096_Spy0235" FT /MGAS315_orthologue="nanH" FT /MGAS5005_orthologue="M5005_Spy0217" FT /MGAS6180_orthologue="M28_Spy0211" FT /MGAS8232_orthologue="spyM18_0240" FT /MGAS9429_orthologue="MGAS9429_Spy0218" FT /SSI_1_orthologue="SPs0190" FT /class="2.1.3" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00192.out" FT /gene="nanH" FT /product="putative N-acetylneuraminate lyase" FT /systematic_id="SpyM50196" FT misc_feature 215211..216089 FT /colour=9 FT /domain="HMMPfam:PF00701;Dihydrodipicolinate synthetase FT family;4.1e-31;codon 6-298" FT /id="SpyM50196" FT /label=HMMPfam FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family, score 4.1e-31" FT CDS 216132..217070 FT /M1_GAS_orthologue="SPy0258" FT /MGAS10270_orthologue="MGAS10270_Spy0218" FT /MGAS10394_orthologue="M6_Spy0250" FT /MGAS10750_orthologue="MGAS10750_Spy0213" FT /MGAS2096_orthologue="MGAS2096_Spy0236" FT /MGAS315_orthologue="SpyM3_0186" FT /MGAS5005_orthologue="M5005_Spy0218" FT /MGAS6180_orthologue="M28_Spy0212" FT /MGAS8232_orthologue="spyM18_0241" FT /MGAS9429_orthologue="MGAS9429_Spy0219" FT /SSI_1_orthologue="SPs0191" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00193.out" FT /product="ROK family protein" FT /systematic_id="SpyM50197" FT misc_feature 216147..216665 FT /colour=9 FT /domain="HMMPfam:PF00480;ROK family;6.1e-29;codon 6-178" FT /id="SpyM50197" FT /label=HMMPfam FT /note="HMMPfam hit to PF00480, ROK family, score 6.1e-29" FT CDS complement(217181..218011) FT /M1_GAS_orthologue="SPy0259" FT /MGAS10270_orthologue="MGAS10270_Spy0219" FT /MGAS10394_orthologue="M6_Spy0251" FT /MGAS10750_orthologue="MGAS10750_Spy0214" FT /MGAS2096_orthologue="MGAS2096_Spy0237" FT /MGAS315_orthologue="SpyM3_0187" FT /MGAS5005_orthologue="M5005_Spy0219" FT /MGAS6180_orthologue="M28_Spy0213" FT /MGAS8232_orthologue="spyM18_0242" FT /MGAS9429_orthologue="MGAS9429_Spy0220" FT /SSI_1_orthologue="SPs0192" FT /class="6.5.0" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00194.out" FT /product="putative transcription regulator" FT /systematic_id="SpyM50198" FT misc_feature complement(217250..217654) FT /colour=9 FT /domain="HMMPfam:PF01380;SIS domain;2.3e-09;codon 120-254" FT /id="SpyM50198" FT /label=HMMPfam FT /note="HMMPfam hit to PF01380, SIS domain, score 2.3e-09" FT misc_feature complement(217454..217477) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(217832..217897) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1116.000, SD 2.99 at aa 39-60, sequence FT LTASEIVKRLHISQAALTRFAK" FT CDS 218263..219087 FT /EC_number="3.1.21.-" FT /M1_GAS_orthologue="SPy0260" FT /MGAS10270_orthologue="MGAS10270_Spy0220" FT /MGAS10394_orthologue="M6_Spy0252" FT /MGAS10750_orthologue="MGAS10750_Spy0215" FT /MGAS2096_orthologue="MGAS2096_Spy0238" FT /MGAS315_orthologue="SpyM3_0188" FT /MGAS5005_orthologue="M5005_Spy0220" FT /MGAS6180_orthologue="M28_Spy0214" FT /MGAS8232_orthologue="spyM18_0243" FT /MGAS9429_orthologue="MGAS9429_Spy0221" FT /SSI_1_orthologue="SPs0193" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00195.out" FT /note="Possible alternate translational start site" FT /product="TatD related DNase" FT /systematic_id="SpyM50199" FT misc_feature 218317..219078 FT /colour=9 FT /domain="HMMPfam:PF01026;TatD related DNase;2e-123;codon FT 8-261" FT /id="SpyM50199" FT /label=HMMPfam FT /note="HMMPfam hit to PF01026, TatD related DNase, score FT 2e-123" FT misc_feature 218323..218349 FT /colour=8 FT /note="PS01137 Uncharacterized protein family UPF0006 FT signature 1." FT CDS 219080..219649 FT /M1_GAS_orthologue="SPy0261" FT /MGAS10270_orthologue="MGAS10270_Spy0221" FT /MGAS10394_orthologue="M6_Spy0253" FT /MGAS10750_orthologue="MGAS10750_Spy0216" FT /MGAS2096_orthologue="MGAS2096_Spy0239" FT /MGAS315_orthologue="SpyM3_0189" FT /MGAS5005_orthologue="M5005_Spy0221" FT /MGAS6180_orthologue="M28_Spy0215" FT /MGAS8232_orthologue="spyM18_0244" FT /MGAS9429_orthologue="MGAS9429_Spy0222" FT /SSI_1_orthologue="SPs0194" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00196.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50200" FT misc_feature 219101..219334 FT /colour=9 FT /domain="HMMPfam:PF01751;Toprim domain;8e-07;codon 8-85" FT /id="SpyM50200" FT /label=HMMPfam FT /note="HMMPfam hit to PF01751, Toprim domain, score 8e-07" FT CDS 219763..220635 FT /EC_number="2.1.1.-" FT /M1_GAS_orthologue="SPy0262" FT /MGAS10270_orthologue="MGAS10270_Spy0222" FT /MGAS10394_orthologue="M6_Spy0254" FT /MGAS10750_orthologue="MGAS10750_Spy0217" FT /MGAS2096_orthologue="MGAS2096_Spy0240" FT /MGAS315_orthologue="ksgA" FT /MGAS5005_orthologue="M5005_Spy0222" FT /MGAS6180_orthologue="M28_Spy0216" FT /MGAS8232_orthologue="ksgA" FT /MGAS9429_orthologue="MGAS9429_Spy0223" FT /SSI_1_orthologue="SPs0195" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00197.out" FT /gene="ksgA" FT /product="dimethyladenosine transferase" FT /systematic_id="SpyM50201" FT misc_feature 219811..220623 FT /colour=9 FT /domain="HMMPfam:PF00398;Ribosomal RNA adenine FT dimethylase;2.2e-76;codon 17-287" FT /id="SpyM50201" FT /label=HMMPfam FT /note="HMMPfam hit to PF00398, Ribosomal RNA adenine FT dimethylase, score 2.2e-76" FT misc_feature 219910..219993 FT /colour=8 FT /note="PS01131 Ribosomal RNA adenine dimethylases FT signature." FT CDS 221059..221931 FT /EC_number="3.6.1.-" FT /M1_GAS_orthologue="SPy0263" FT /MGAS10270_orthologue="MGAS10270_Spy0223" FT /MGAS10394_orthologue="M6_Spy0255" FT /MGAS10750_orthologue="MGAS10750_Spy0218" FT /MGAS2096_orthologue="MGAS2096_Spy0241" FT /MGAS315_orthologue="SpyM3_0191" FT /MGAS5005_orthologue="M5005_Spy0223" FT /MGAS6180_orthologue="M28_Spy0217" FT /MGAS8232_orthologue="spyM18_0247" FT /SSI_1_orthologue="SPs0196" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00198.out" FT /gene="engC" FT /product="probable GTPase EngC" FT /systematic_id="SpyM50202" FT misc_feature 221062..221880 FT /colour=9 FT /domain="HMMPfam:PF03193;Protein of unknown function, FT DUF258;7.3e-158;codon 2-274" FT /id="SpyM50202" FT /label=HMMPfam FT /note="HMMPfam hit to PF03193, Protein of unknown FT function, DUF258, score 7.3e-158" FT misc_feature 221524..221547 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 221941..222603 FT /EC_number="5.1.3.1" FT /M1_GAS_orthologue="SPy0264" FT /MGAS10270_orthologue="MGAS10270_Spy0224" FT /MGAS10394_orthologue="M6_Spy0256" FT /MGAS10750_orthologue="MGAS10750_Spy0219" FT /MGAS2096_orthologue="MGAS2096_Spy0242" FT /MGAS315_orthologue="rpe" FT /MGAS5005_orthologue="M5005_Spy0224" FT /MGAS6180_orthologue="M28_Spy0218" FT /MGAS8232_orthologue="spyM18_0248" FT /MGAS9429_orthologue="MGAS9429_Spy0226" FT /SSI_1_orthologue="SPs0197" FT /class="3.3.15" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00199.out" FT /gene="rpe" FT /product="putative ribulose-phosphate 3-epimerase" FT /systematic_id="SpyM50203" FT misc_feature 221953..222555 FT /colour=9 FT /domain="HMMPfam:PF00834;Ribulose-phosphate 3 epimerase FT family;3.2e-109;codon 5-205" FT /id="SpyM50203" FT /label=HMMPfam FT /note="HMMPfam hit to PF00834, Ribulose-phosphate 3 FT epimerase family, score 3.2e-109" FT misc_feature 222037..222081 FT /colour=8 FT /note="PS01085 Ribulose-phosphate 3-epimerase family FT signature 1." FT misc_feature 222343..222411 FT /colour=8 FT /note="PS01086 Ribulose-phosphate 3-epimerase family FT signature 2." FT CDS 222596..223228 FT /EC_number="2.7.6.2" FT /M1_GAS_orthologue="SPy0265" FT /MGAS10270_orthologue="MGAS10270_Spy0225" FT /MGAS10394_orthologue="M6_Spy0257" FT /MGAS10750_orthologue="MGAS10750_Spy0220" FT /MGAS2096_orthologue="MGAS2096_Spy0243" FT /MGAS315_orthologue="SpyM3_0193" FT /MGAS5005_orthologue="M5005_Spy0225" FT /MGAS6180_orthologue="M28_Spy0219" FT /MGAS8232_orthologue="spyM18_0249" FT /MGAS9429_orthologue="MGAS9429_Spy0227" FT /SSI_1_orthologue="SPs0198" FT /class="3.2.14" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00200.out" FT /gene="thiN" FT /product="putative thiamin pyrophosphokinase" FT /systematic_id="SpyM50204" FT misc_feature 222617..222982 FT /colour=9 FT /domain="HMMPfam:PF04263;Thiamin pyrophosphokinase, FT catalytic d;2.4e-48;codon 8-129" FT /id="SpyM50204" FT /label=HMMPfam FT /note="HMMPfam hit to PF04263, Thiamin pyrophosphokinase, FT catalytic d, score 2.4e-48" FT misc_feature 223010..223204 FT /colour=9 FT /domain="HMMPfam:PF04265;Thiamin pyrophosphokinase, FT vitamin B1;4.1e-27;codon 139-203" FT /id="SpyM50204" FT /label=HMMPfam FT /note="HMMPfam hit to PF04265, Thiamin pyrophosphokinase, FT vitamin B1, score 4.1e-27" FT CDS 223230..224501 FT /M1_GAS_orthologue="SPy0266" FT /MGAS10270_orthologue="MGAS10270_Spy0226" FT /MGAS10394_orthologue="M6_Spy0258" FT /MGAS10750_orthologue="MGAS10750_Spy0221" FT /MGAS2096_orthologue="MGAS2096_Spy0244" FT /MGAS315_orthologue="SpyM3_0194" FT /MGAS5005_orthologue="M5005_Spy0226" FT /MGAS6180_orthologue="M28_Spy0220" FT /MGAS8232_orthologue="spyM18_0250" FT /MGAS9429_orthologue="MGAS9429_Spy0228" FT /SSI_1_orthologue="SPs0199" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00201.out" FT /product="RmuC family protein" FT /systematic_id="SpyM50205" FT misc_feature 223230..223337 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.301" FT /colour=3 FT /coord="36,37" FT /id="SpyM50205" FT /note="Signal peptide predicted for SpyM50205 by SignalP FT 2.0 HMM (Signal peptide probability 0.665) with cleavage FT site probability 0.301 between residues 36 and 37" FT /signal="0.665" FT /type="signalp" FT misc_feature 223236..223292 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="3,21" FT /id="SpyM50205" FT /note="1 probable transmembrane helix predicted for FT SpyM50205 by TMHMM2.0 at aa 3-21" FT /type="TMHMM" FT misc_feature 223575..224477 FT /colour=9 FT /domain="HMMPfam:PF02646;RmuC family;4.9e-141;codon FT 116-416" FT /id="SpyM50205" FT /label=HMMPfam FT /note="HMMPfam hit to PF02646, RmuC family, score FT 4.9e-141" FT CDS 224491..225429 FT /M1_GAS_orthologue="SPy0267" FT /MGAS10270_orthologue="MGAS10270_Spy0227" FT /MGAS10394_orthologue="M6_Spy0259" FT /MGAS10750_orthologue="MGAS10750_Spy0222" FT /MGAS2096_orthologue="MGAS2096_Spy0245" FT /MGAS315_orthologue="cbf" FT /MGAS5005_orthologue="M5005_Spy0227" FT /MGAS6180_orthologue="M28_Spy0221" FT /MGAS8232_orthologue="spyM18_0251" FT /MGAS9429_orthologue="MGAS9429_Spy0229" FT /SSI_1_orthologue="SPs0200" FT /class="2.1.1" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00202.out" FT /product="putative 3'-5' exoribonuclease" FT /systematic_id="SpyM50206" FT misc_feature 224536..224748 FT /colour=9 FT /domain="HMMPfam:PF01336;OB-fold nucleic acid binding FT domain;0.0011;codon 16-86" FT /id="SpyM50206" FT /label=HMMPfam FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid FT binding domain, score 0.0011" FT misc_feature 224962..225327 FT /colour=9 FT /domain="HMMPfam:PF01966;HD domain;1.6e-06;codon 158-279" FT /id="SpyM50206" FT /label=HMMPfam FT /note="HMMPfam hit to PF01966, HD domain, score 1.6e-06" FT CDS 225696..226535 FT /M1_GAS_orthologue="SPy0268" FT /MGAS10270_orthologue="MGAS10270_Spy0228" FT /MGAS10394_orthologue="M6_Spy0260" FT /MGAS10750_orthologue="MGAS10750_Spy0223" FT /MGAS2096_orthologue="MGAS2096_Spy0246" FT /MGAS315_orthologue="purR" FT /MGAS5005_orthologue="M5005_Spy0228" FT /MGAS6180_orthologue="M28_Spy0222" FT /MGAS8232_orthologue="purR" FT /MGAS9429_orthologue="MGAS9429_Spy0230" FT /SSI_1_orthologue="SPs0201" FT /class="6.5.0" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00203.out" FT /gene="purR" FT /product="putative pur operon repressor" FT /systematic_id="SpyM50207" FT misc_feature 226005..226421 FT /colour=9 FT /domain="HMMPfam:PF00156;Phosphoribosyl transferase FT domain;9.1e-18;codon 104-242" FT /id="SpyM50207" FT /label=HMMPfam FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 9.1e-18" FT CDS 226526..229147 FT /M1_GAS_orthologue="SPy0269" FT /MGAS10270_orthologue="MGAS10270_Spy0229" FT /MGAS10394_orthologue="M6_Spy0261" FT /MGAS10750_orthologue="MGAS10750_Spy0224" FT /MGAS2096_orthologue="MGAS2096_Spy0247" FT /MGAS315_orthologue="prgA" FT /MGAS5005_orthologue="M5005_Spy0229" FT /MGAS6180_orthologue="M28_Spy0223" FT /MGAS8232_orthologue="spyM18_0256" FT /MGAS9429_orthologue="MGAS9429_Spy0231" FT /SSI_1_orthologue="SPs0202" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00204.out" FT /product="putative membrane anchored protein" FT /systematic_id="SpyM50208" FT misc_feature 226526..226633 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.936" FT /colour=3 FT /coord="36,37" FT /id="SpyM50208" FT /note="Signal peptide predicted for SpyM50208 by SignalP FT 2.0 HMM (Signal peptide probability 0.972) with cleavage FT site probability 0.936 between residues 36 and 37" FT /signal="0.972" FT /type="signalp" FT CDS 229355..229768 FT /M1_GAS_orthologue="SPy0271" FT /MGAS10270_orthologue="MGAS10270_Spy0230" FT /MGAS10394_orthologue="M6_Spy0262" FT /MGAS10750_orthologue="MGAS10750_Spy0225" FT /MGAS2096_orthologue="MGAS2096_Spy0248" FT /MGAS315_orthologue="rpsL" FT /MGAS5005_orthologue="M5005_Spy0230" FT /MGAS6180_orthologue="M28_Spy0224" FT /MGAS8232_orthologue="rpsL" FT /MGAS9429_orthologue="MGAS9429_Spy0232" FT /SSI_1_orthologue="SPs0203" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00205.out" FT /gene="rpsL" FT /product="30S ribosomal protein S12" FT /systematic_id="SpyM50209" FT misc_feature 229361..229762 FT /colour=9 FT /domain="HMMPfam:PF00164;Ribosomal protein FT S12;1.1e-69;codon 3-136" FT /id="SpyM50209" FT /label=HMMPfam FT /note="HMMPfam hit to PF00164, Ribosomal protein S12, FT score 1.1e-69" FT misc_feature 229520..229543 FT /colour=8 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 229789..230259 FT /M1_GAS_orthologue="SPy0272" FT /MGAS10270_orthologue="MGAS10270_Spy0231" FT /MGAS10394_orthologue="M6_Spy0263" FT /MGAS10750_orthologue="MGAS10750_Spy0226" FT /MGAS2096_orthologue="MGAS2096_Spy0249" FT /MGAS315_orthologue="rpsG" FT /MGAS5005_orthologue="M5005_Spy0231" FT /MGAS6180_orthologue="M28_Spy0225" FT /MGAS8232_orthologue="rpsG" FT /MGAS9429_orthologue="MGAS9429_Spy0233" FT /SSI_1_orthologue="SPs0204" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00206.out" FT /gene="rpsG" FT /product="30S ribosomal protein S7" FT /systematic_id="SpyM50210" FT misc_feature 229789..230235 FT /colour=9 FT /domain="HMMPfam:PF00177;Ribosomal protein FT S7p/S5e;1.5e-78;codon 1-149" FT /id="SpyM50210" FT /label=HMMPfam FT /note="HMMPfam hit to PF00177, Ribosomal protein S7p/S5e, FT score 1.5e-78" FT misc_feature 229846..229926 FT /colour=8 FT /note="PS00052 Ribosomal protein S7 signature." FT CDS 230744..232822 FT /M1_GAS_orthologue="SPy0273" FT /MGAS10270_orthologue="MGAS10270_Spy0232" FT /MGAS10394_orthologue="M6_Spy0264" FT /MGAS10750_orthologue="MGAS10750_Spy0227" FT /MGAS2096_orthologue="MGAS2096_Spy0251" FT /MGAS315_orthologue="fusA" FT /MGAS5005_orthologue="M5005_Spy0232" FT /MGAS6180_orthologue="M28_Spy0226" FT /MGAS8232_orthologue="fusA" FT /MGAS9429_orthologue="MGAS9429_Spy0234" FT /SSI_1_orthologue="SPs0206" FT /class="2.2.10" FT /cluster="Spy_40:0027 2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00207.out" FT /gene="fus" FT /product="elongation factor G (EF-G)" FT /systematic_id="SpyM50211" FT misc_feature 230765..231589 FT /colour=9 FT /domain="HMMPfam:PF00009;Elongation factor Tu GTP binding FT domain;5.4e-112;codon 8-282" FT /id="SpyM50211" FT /label=HMMPfam FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 5.4e-112" FT misc_feature 230792..230815 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 230894..230941 FT /colour=8 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 231707..231910 FT /colour=9 FT /domain="HMMPfam:PF03144;Elongation factor Tu FT domain;8.6e-18;codon 322-389" FT /id="SpyM50211" FT /label=HMMPfam FT /note="HMMPfam hit to PF03144, Elongation factor Tu FT domain, score 8.6e-18" FT misc_feature 232172..232531 FT /colour=9 FT /domain="HMMPfam:PF03764;Elongation factor G, domain FT IV;4.5e-67;codon 477-596" FT /id="SpyM50211" FT /label=HMMPfam FT /note="HMMPfam hit to PF03764, Elongation factor G, domain FT IV, score 4.5e-67" FT misc_feature 232535..232798 FT /colour=9 FT /domain="HMMPfam:PF00679;Elongation factor G FT C-terminus;3e-46;codon 598-685" FT /id="SpyM50211" FT /label=HMMPfam FT /note="HMMPfam hit to PF00679, Elongation factor G FT C-terminus, score 3e-46" FT CDS 233163..234173 FT /EC_number="1.2.1.12" FT /M1_GAS_orthologue="SPy0274" FT /MGAS10270_orthologue="MGAS10270_Spy0233" FT /MGAS10394_orthologue="M6_Spy0265" FT /MGAS10750_orthologue="MGAS10750_Spy0228" FT /MGAS2096_orthologue="MGAS2096_Spy0252" FT /MGAS315_orthologue="plr" FT /MGAS5005_orthologue="M5005_Spy0233" FT /MGAS6180_orthologue="M28_Spy0227" FT /MGAS8232_orthologue="gapA" FT /MGAS9429_orthologue="MGAS9429_Spy0235" FT /SSI_1_orthologue="SPs0207" FT /class="3.5.5" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00208.out" FT /gene="plr" FT /gene="gapA" FT /product="glyceraldehyde-3-phosphate dehydrogenase, FT plasmin receptor" FT /systematic_id="SpyM50212" FT misc_feature 233169..233618 FT /colour=9 FT /domain="HMMPfam:PF00044;Glyceraldehyde 3-phosphate FT dehydrogenase, NA;1.1e-83;codon 3-152" FT /id="SpyM50212" FT /label=HMMPfam FT /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate FT dehydrogenase, NA, score 1.1e-83" FT misc_feature 233610..233633 FT /colour=8 FT /note="PS00071 Glyceraldehyde 3-phosphate dehydrogenase FT active site." FT misc_feature 233619..234104 FT /colour=9 FT /domain="HMMPfam:PF02800;Glyceraldehyde 3-phosphate FT dehydrogenase, C-;2.6e-107;codon 153-314" FT /id="SpyM50212" FT /label=HMMPfam FT /note="HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate FT dehydrogenase, C-, score 2.6e-107" FT CDS complement(234399..234515) FT /MGAS10270_orthologue="MGAS10270_Spy0234" FT /MGAS10394_orthologue="M6_Spy0266" FT /MGAS10750_orthologue="MGAS10750_Spy0229" FT /MGAS5005_orthologue="M5005_Spy0234" FT /MGAS6180_orthologue="M28_Spy0228" FT /MGAS8232_orthologue="spyM18_0262" FT /MGAS9429_orthologue="MGAS9429_Spy0236" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00209.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50213" FT CDS complement(234657..235397) FT /M1_GAS_orthologue="SPy0276" FT /MGAS10270_orthologue="MGAS10270_Spy0235" FT /MGAS10394_orthologue="M6_Spy0267" FT /MGAS10750_orthologue="MGAS10750_Spy0230" FT /MGAS2096_orthologue="MGAS2096_Spy0253" FT /MGAS315_orthologue="SpyM3_0202" FT /MGAS5005_orthologue="M5005_Spy0235" FT /MGAS6180_orthologue="M28_Spy0229" FT /MGAS8232_orthologue="spyM18_0263" FT /MGAS9429_orthologue="MGAS9429_Spy0237" FT /SSI_1_orthologue="SPs0208" FT /class="1.5.1" FT /cluster="Spy_40:0001 6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00210.out" FT /gene="glnQ2" FT /note="Similar to SpyM50615, 57.143% identity (57.377% FT ungapped) in 245 aa overlap, and to SpyM50788, 51.020% FT identity (51.230% ungapped) in 245 aa overlap" FT /product="putative glutamine ABC transporter, ATP-binding FT protein 2" FT /systematic_id="SpyM50214" FT misc_feature complement(234747..235307) FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;3.3e-58;codon FT 31-217" FT /id="SpyM50214" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.3e-58" FT misc_feature complement(234930..234974) FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(235263..235286) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(235390..236958) FT /M1_GAS_orthologue="SPy0277" FT /MGAS10270_orthologue="MGAS10270_Spy0236" FT /MGAS10394_orthologue="M6_Spy0268" FT /MGAS10750_orthologue="MGAS10750_Spy0231" FT /MGAS315_orthologue="SpyM3_0203" FT /MGAS5005_orthologue="M5005_Spy0236" FT /MGAS6180_orthologue="M28_Spy0230" FT /MGAS8232_orthologue="spyM18_0264" FT /MGAS9429_orthologue="MGAS9429_Spy0238" FT /SSI_1_orthologue="SPs0209" FT /class="1.5.1" FT /cluster="Spy_40:0028 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00211.out" FT /product="glutamine ABC transporter, glutamine-binding FT protein/permease protein" FT /systematic_id="SpyM50215" FT misc_feature complement(235447..236085) FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;1.6e-25;codon 292-504" FT /id="SpyM50215" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 1.6e-25" FT misc_feature complement(join(235474..235542,235555..235614,235759..235827,235870..235938,235999..236067)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="298,320" FT /coord="341,363" FT /coord="378,400" FT /coord="449,468" FT /coord="473,495" FT /id="SpyM50215" FT /note="5 probable transmembrane helices predicted for FT SpyM50215 by TMHMM2.0 at aa 298-320, 341-363, 378-400, FT 449-468 and 473-495" FT /type="TMHMM" FT misc_feature complement(235678..235764) FT /colour=8 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(236170..236877) FT /colour=9 FT /domain="HMMPfam:PF00497;Bacterial extracellular FT solute-binding p;8.1e-31;codon 28-263" FT /id="SpyM50215" FT /label=HMMPfam FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding p, score 8.1e-31" FT misc_feature complement(236887..236958) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.916" FT /colour=3 FT /coord="24,25" FT /id="SpyM50215" FT /note="Signal peptide predicted for SpyM50215 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.916 between residues 24 and 25" FT /signal="1.000" FT /type="signalp" FT CDS 237156..239081 FT /M1_GAS_orthologue="SPy0278" FT /MGAS10270_orthologue="MGAS10270_Spy0237" FT /MGAS10394_orthologue="M6_Spy0269" FT /MGAS2096_orthologue="MGAS2096_Spy0256" FT /MGAS315_orthologue="SpyM3_0204" FT /MGAS5005_orthologue="M5005_Spy0237" FT /MGAS8232_orthologue="spyM18_0265" FT /MGAS9429_orthologue="MGAS9429_Spy0239" FT /SSI_1_orthologue="SPs0210" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00212.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50216" FT misc_feature 237156..237218 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.965" FT /colour=3 FT /coord="21,22" FT /id="SpyM50216" FT /note="Signal peptide predicted for SpyM50216 by SignalP FT 2.0 HMM (Signal peptide probability 0.999) with cleavage FT site probability 0.965 between residues 21 and 22" FT /signal="0.999" FT /type="signalp" FT misc_feature join(237876..237944,238527..238595,238605..238673) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="241,263" FT /coord="458,480" FT /coord="484,506" FT /id="SpyM50216" FT /note="3 probable transmembrane helices predicted for FT SpyM50216 by TMHMM2.0 at aa 241-263, 458-480 and 484-506" FT /type="TMHMM" FT CDS 239147..239986 FT /EC_number="2.7.1.66" FT /M1_GAS_orthologue="SPy0280" FT /MGAS10270_orthologue="MGAS10270_Spy0238" FT /MGAS10394_orthologue="M6_Spy0270" FT /MGAS10750_orthologue="MGAS10750_Spy0235" FT /MGAS2096_orthologue="MGAS2096_Spy0257" FT /MGAS315_orthologue="bacA" FT /MGAS5005_orthologue="M5005_Spy0238" FT /MGAS6180_orthologue="M28_Spy0233" FT /MGAS8232_orthologue="spyM18_0268" FT /MGAS9429_orthologue="MGAS9429_Spy0240" FT /SSI_1_orthologue="SPs0211" FT /class="1.4.2" FT /colour=0 FT /fasta_file="fasta/SP_new.tab.seq.00213.out" FT /gene="bacA" FT /product="undecaprenol kinase (bacitracin resistance FT protein)" FT /systematic_id="SpyM50217" FT misc_feature 239168..239953 FT /colour=9 FT /domain="HMMPfam:PF02673;Bacitracin resistance protein FT BacA;5.8e-132;codon 8-269" FT /id="SpyM50217" FT /label=HMMPfam FT /note="HMMPfam hit to PF02673, Bacitracin resistance FT protein BacA, score 5.8e-132" FT misc_feature join(239174..239242,239279..239347,239390..239458,239477..239545,239588..239656,239675..239743,239813..239881,239918..239971) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="10,32" FT /coord="45,67" FT /coord="82,104" FT /coord="111,133" FT /coord="148,170" FT /coord="177,199" FT /coord="223,245" FT /coord="258,275" FT /id="SpyM50217" FT /note="8 probable transmembrane helices predicted for FT SpyM50217 by TMHMM2.0 at aa 10-32, 45-67, 82-104, 111-133, FT 148-170, 177-199, 223-245 and 258-275" FT /type="TMHMM" FT CDS 240132..240893 FT /M1_GAS_orthologue="SPy0281" FT /MGAS10270_orthologue="MGAS10270_Spy0239" FT /MGAS10394_orthologue="M6_Spy0271" FT /MGAS10750_orthologue="MGAS10750_Spy0236" FT /MGAS2096_orthologue="MGAS2096_Spy0258" FT /MGAS315_orthologue="mecA" FT /MGAS5005_orthologue="M5005_Spy0239" FT /MGAS6180_orthologue="M28_Spy0234" FT /MGAS8232_orthologue="spyM18_0269" FT /MGAS9429_orthologue="MGAS9429_Spy0241" FT /SSI_1_orthologue="SPs0212" FT /class="1.3.1" FT /colour=0 FT /fasta_file="fasta/SP_new.tab.seq.00214.out" FT /gene="mecA" FT /product="adapter protein MecA" FT /systematic_id="SpyM50218" FT misc_feature 240132..240878 FT /colour=9 FT /domain="HMMPfam:PF05389;Negative regulator of genetic FT competence (Me;3.3e-133;codon 3-251" FT /id="SpyM50218" FT /label=HMMPfam FT /note="HMMPfam hit to PF05389, Negative regulator of FT genetic competence (Me, score 3.3e-133" FT CDS 240900..242069 FT /M1_GAS_orthologue="SPy0282" FT /MGAS10270_orthologue="MGAS10270_Spy0240" FT /MGAS10394_orthologue="M6_Spy0272" FT /MGAS10750_orthologue="MGAS10750_Spy0237" FT /MGAS2096_orthologue="MGAS2096_Spy0259" FT /MGAS315_orthologue="rgpG" FT /MGAS5005_orthologue="M5005_Spy0240" FT /MGAS6180_orthologue="M28_Spy0235" FT /MGAS8232_orthologue="rgpG" FT /MGAS9429_orthologue="MGAS9429_Spy0242" FT /SSI_1_orthologue="SPs0213" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00215.out" FT /gene="rgpG" FT /product="putative glycosyl transferase" FT /systematic_id="SpyM50219" FT misc_feature 240900..241004 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.836" FT /colour=3 FT /coord="35,36" FT /id="SpyM50219" FT /note="Signal peptide predicted for SpyM50219 by SignalP FT 2.0 HMM (Signal peptide probability 0.986) with cleavage FT site probability 0.836 between residues 35 and 36" FT /signal="0.986" FT /type="signalp" FT misc_feature join(240927..240992,241053..241112,241140..241208,241242..241286,241329..241388,241422..241490,241500..241559,241578..241646,241659..241727,241815..241883,241896..241964) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="10,31" FT /coord="52,71" FT /coord="81,103" FT /coord="115,129" FT /coord="144,163" FT /coord="175,197" FT /coord="201,220" FT /coord="227,249" FT /coord="254,276" FT /coord="306,328" FT /coord="333,355" FT /id="SpyM50219" FT /note="11 probable transmembrane helices predicted for FT SpyM50219 by TMHMM2.0 at aa 10-31, 52-71, 81-103, 115-129, FT 144-163, 175-197, 201-220, 227-249, 254-276, 306-328 and FT 333-355" FT /type="TMHMM" FT misc_feature 241158..241661 FT /colour=9 FT /domain="HMMPfam:PF00953;Glycosyl FT transferase;2.2e-42;codon 87-254" FT /id="SpyM50219" FT /label=HMMPfam FT /note="HMMPfam hit to PF00953, Glycosyl transferase, score FT 2.2e-42" FT CDS 242191..242961 FT /M1_GAS_orthologue="SPy0285" FT /MGAS10270_orthologue="MGAS10270_Spy0242" FT /MGAS10394_orthologue="M6_Spy0273" FT /MGAS10750_orthologue="MGAS10750_Spy0239" FT /MGAS2096_orthologue="MGAS2096_Spy0261" FT /MGAS315_orthologue="SpyM3_0208" FT /MGAS5005_orthologue="M5005_Spy0242" FT /MGAS6180_orthologue="M28_Spy0237" FT /MGAS8232_orthologue="spyM18_0273" FT /MGAS9429_orthologue="MGAS9429_Spy0244" FT /SSI_1_orthologue="SPs0214" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00216.out" FT /gene="sufC" FT /product="putative ABC transporter, ATP-binding protein" FT /systematic_id="SpyM50220" FT misc_feature 242275..242856 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;1.5e-31;codon FT 29-222" FT /id="SpyM50220" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.5e-31" FT misc_feature 242296..242319 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 242626..242670 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS 243056..244318 FT /M1_GAS_orthologue="SPy0287" FT /MGAS10270_orthologue="MGAS10270_Spy0243" FT /MGAS10394_orthologue="M6_Spy0274" FT /MGAS10750_orthologue="MGAS10750_Spy0240" FT /MGAS2096_orthologue="MGAS2096_Spy0262" FT /MGAS315_orthologue="SpyM3_0209" FT /MGAS5005_orthologue="M5005_Spy0243" FT /MGAS6180_orthologue="M28_Spy0238" FT /MGAS8232_orthologue="spyM18_0275" FT /MGAS9429_orthologue="MGAS9429_Spy0245" FT /SSI_1_orthologue="SPs0215" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00217.out" FT /gene="sufD" FT /note="CDS is involved in iron metabolism, and has a role FT in oxidative stress resistance" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50221" FT misc_feature 243530..244231 FT /colour=9 FT /domain="HMMPfam:PF01458;Uncharacterized protein family FT (UPF0051);2.1e-44;codon 159-392" FT /id="SpyM50221" FT /label=HMMPfam FT /note="HMMPfam hit to PF01458, Uncharacterized protein FT family (UPF0051), score 2.1e-44" FT CDS 244349..245575 FT /EC_number="4.4.1.16" FT /M1_GAS_orthologue="SPy0288" FT /MGAS10270_orthologue="MGAS10270_Spy0244" FT /MGAS10394_orthologue="M6_Spy0275" FT /MGAS10750_orthologue="MGAS10750_Spy0241" FT /MGAS2096_orthologue="MGAS2096_Spy0263" FT /MGAS315_orthologue="SpyM3_0210" FT /MGAS5005_orthologue="M5005_Spy0244" FT /MGAS6180_orthologue="M28_Spy0239" FT /MGAS8232_orthologue="spyM18_0276" FT /MGAS9429_orthologue="MGAS9429_Spy0246" FT /SSI_1_orthologue="SPs0216" FT /class="3.3.21" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00218.out" FT /gene="csdB" FT /gene="sufS" FT /product="putative cysteine desulfurase" FT /systematic_id="SpyM50222" FT misc_feature 244448..245527 FT /colour=9 FT /domain="HMMPfam:PF00266;Aminotransferase FT class-V;1.1e-11;codon 34-393" FT /id="SpyM50222" FT /label=HMMPfam FT /note="HMMPfam hit to PF00266, Aminotransferase class-V, FT score 1.1e-11" FT misc_feature 244988..245047 FT /colour=8 FT /note="PS00595 Aminotransferases class-V FT pyridoxal-phosphate attachment site." FT CDS 245562..246041 FT /M1_GAS_orthologue="SPy0289" FT /MGAS10270_orthologue="MGAS10270_Spy0245" FT /MGAS10394_orthologue="M6_Spy0276" FT /MGAS10750_orthologue="MGAS10750_Spy0242" FT /MGAS2096_orthologue="MGAS2096_Spy0264" FT /MGAS315_orthologue="SpyM3_0211" FT /MGAS5005_orthologue="M5005_Spy0245" FT /MGAS6180_orthologue="M28_Spy0240" FT /MGAS8232_orthologue="spyM18_0277" FT /MGAS9429_orthologue="MGAS9429_Spy0247" FT /SSI_1_orthologue="SPs0217" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00219.out" FT /gene="iscU" FT /note="CDS is involved in iron metabolism, and had a role FT in oxidative stress resistance" FT /product="NifU-like protein" FT /systematic_id="SpyM50223" FT misc_feature 245586..245945 FT /colour=9 FT /domain="HMMPfam:PF01592;NifU-like N terminal FT domain;9.2e-29;codon 9-128" FT /id="SpyM50223" FT /label=HMMPfam FT /note="HMMPfam hit to PF01592, NifU-like N terminal FT domain, score 9.2e-29" FT CDS 246034..247452 FT /M1_GAS_orthologue="SPy0290" FT /MGAS10270_orthologue="MGAS10270_Spy0246" FT /MGAS10394_orthologue="M6_Spy0277" FT /MGAS10750_orthologue="MGAS10750_Spy0243" FT /MGAS2096_orthologue="MGAS2096_Spy0265" FT /MGAS315_orthologue="SpyM3_0212" FT /MGAS5005_orthologue="M5005_Spy0246" FT /MGAS6180_orthologue="M28_Spy0241" FT /MGAS8232_orthologue="spyM18_0278" FT /MGAS9429_orthologue="MGAS9429_Spy0248" FT /SSI_1_orthologue="SPs0218" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00220.out" FT /gene="sufB" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50224" FT misc_feature 246664..247362 FT /colour=9 FT /domain="HMMPfam:PF01458;Uncharacterized protein family FT (UPF0051);4.2e-118;codon 211-443" FT /id="SpyM50224" FT /label=HMMPfam FT /note="HMMPfam hit to PF01458, Uncharacterized protein FT family (UPF0051), score 4.2e-118" FT CDS complement(247604..248785) FT /EC_number="3.4.16.4" FT /MGAS10270_orthologue="MGAS10270_Spy0247" FT /MGAS10394_orthologue="M6_Spy0278" FT /MGAS10750_orthologue="MGAS10750_Spy0244" FT /MGAS315_orthologue="SpyM3_0213" FT /MGAS5005_orthologue="M5005_Spy0247" FT /MGAS6180_orthologue="M28_Spy0242" FT /MGAS8232_orthologue="spyM18_0279" FT /MGAS9429_orthologue="MGAS9429_Spy0249" FT /SSI_1_orthologue="SPs0219" FT /class="4.1.9" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00221.out" FT /product="putative D-alanyl-D-alanine carboxypeptidase" FT /systematic_id="SpyM50225" FT misc_feature complement(247619..247687) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="367,389" FT /id="SpyM50225" FT /note="1 probable transmembrane helix predicted for FT SpyM50225 by TMHMM2.0 at aa 367-389" FT /type="TMHMM" FT misc_feature complement(247910..248680) FT /colour=9 FT /domain="HMMPfam:PF00768;D-alanyl-D-alanine FT carboxypeptidase;3.7e-39;codon 36-292" FT /id="SpyM50225" FT /label=HMMPfam FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase, score 3.7e-39" FT misc_feature complement(248717..248785) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.999" FT /colour=3 FT /coord="23,24" FT /id="SpyM50225" FT /note="Signal peptide predicted for SpyM50225 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.999 between residues 23 and 24" FT /signal="1.000" FT /type="signalp" FT CDS complement(248953..250185) FT /M1_GAS_orthologue="SPy0292" FT /MGAS10270_orthologue="MGAS10270_Spy0248" FT /MGAS10394_orthologue="M6_Spy0279" FT /MGAS10750_orthologue="MGAS10750_Spy0245" FT /MGAS315_orthologue="dacA" FT /MGAS5005_orthologue="M5005_Spy0248" FT /MGAS6180_orthologue="M28_Spy0243" FT /MGAS8232_orthologue="dacA" FT /MGAS9429_orthologue="MGAS9429_Spy0250" FT /SSI_1_orthologue="SPs0220" FT /class="4.1.9" FT /cluster="Spy_40:0029 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00222.out" FT /product="putative D-alanyl-D-alanine carboxypeptidase" FT /systematic_id="SpyM50226" FT misc_feature complement(249325..250158) FT /colour=9 FT /domain="HMMPfam:PF00144;Beta-lactamase;0.0008;codon FT 10-287" FT /id="SpyM50226" FT /label=HMMPfam FT /note="HMMPfam hit to PF00144, Beta-lactamase, score FT 0.0008" FT misc_feature complement(249376..250137) FT /colour=9 FT /domain="HMMPfam:PF00768;D-alanyl-D-alanine FT carboxypeptidase;2.3e-141;codon 17-270" FT /id="SpyM50226" FT /label=HMMPfam FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase, score 2.3e-141" FT misc_feature complement(250120..250185) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.847" FT /colour=3 FT /coord="22,23" FT /id="SpyM50226" FT /note="Signal peptide predicted for SpyM50226 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.847 between residues 22 and 23" FT /signal="1.000" FT /type="signalp" FT CDS 250507..252486 FT /MGAS10270_orthologue="MGAS10270_Spy0249" FT /MGAS10394_orthologue="M6_Spy0280" FT /MGAS10750_orthologue="MGAS10750_Spy0246" FT /MGAS2096_orthologue="MGAS2096_Spy0270" FT /MGAS315_orthologue="oppA" FT /MGAS5005_orthologue="M5005_Spy0249" FT /MGAS6180_orthologue="M28_Spy0244" FT /MGAS8232_orthologue="oppA" FT /MGAS9429_orthologue="MGAS9429_Spy0251" FT /SSI_1_orthologue="SPs0221" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00223.out" FT /product="putative extracellular oligopeptide-binding FT protein" FT /systematic_id="SpyM50227" FT misc_feature 250507..250608 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.516" FT /colour=3 FT /coord="34,35" FT /id="SpyM50227" FT /note="Signal peptide predicted for SpyM50227 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.516 between residues 34 and 35" FT /signal="1.000" FT /type="signalp" FT misc_feature 250552..250584 FT /colour=8 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 250747..252084 FT /colour=9 FT /domain="HMMPfam:PF00496;Bacterial extracellular FT solute-binding prot;1.2e-45;codon 81-526" FT /id="SpyM50227" FT /label=HMMPfam FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding prot, score 1.2e-45" FT misc_feature 250765..250833 FT /colour=8 FT /note="PS01040 Bacterial extracellular solute-binding FT proteins, family 5 signature." FT CDS 252551..254053 FT /M1_GAS_orthologue="SPy0294" FT /MGAS10270_orthologue="MGAS10270_Spy0250" FT /MGAS10394_orthologue="M6_Spy0281" FT /MGAS10750_orthologue="MGAS10750_Spy0247" FT /MGAS2096_orthologue="MGAS2096_Spy0271" FT /MGAS315_orthologue="oppB" FT /MGAS5005_orthologue="M5005_Spy0250" FT /MGAS6180_orthologue="M28_Spy0245" FT /MGAS8232_orthologue="oppB" FT /MGAS9429_orthologue="MGAS9429_Spy0252" FT /SSI_1_orthologue="SPs0222" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00224.out" FT /product="putative oligopeptide transporter permease FT protein" FT /systematic_id="SpyM50228" FT misc_feature 252551..252664 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.633" FT /colour=3 FT /coord="38,39" FT /id="SpyM50228" FT /note="Signal peptide predicted for SpyM50228 by SignalP FT 2.0 HMM (Signal peptide probability 0.990) with cleavage FT site probability 0.633 between residues 38 and 39" FT /signal="0.990" FT /type="signalp" FT misc_feature join(252587..252655,253403..253471,253520..253588,253631..253690,253805..253873,253931..253999) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /coord="285,307" FT /coord="324,346" FT /coord="361,380" FT /coord="419,441" FT /coord="461,483" FT /id="SpyM50228" FT /note="6 probable transmembrane helices predicted for FT SpyM50228 by TMHMM2.0 at aa 13-35, 285-307, 324-346, FT 361-380, 419-441 and 461-483" FT /type="TMHMM" FT misc_feature 253391..254029 FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;1.4e-48;codon 281-493" FT /id="SpyM50228" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 1.4e-48" FT CDS 254053..254979 FT /M1_GAS_orthologue="SPy0295" FT /MGAS10270_orthologue="MGAS10270_Spy0251" FT /MGAS10394_orthologue="M6_Spy0282" FT /MGAS10750_orthologue="MGAS10750_Spy0248" FT /MGAS2096_orthologue="MGAS2096_Spy0272" FT /MGAS315_orthologue="oppC" FT /MGAS5005_orthologue="M5005_Spy0251" FT /MGAS6180_orthologue="M28_Spy0246" FT /MGAS8232_orthologue="oppC" FT /MGAS9429_orthologue="MGAS9429_Spy0253" FT /SSI_1_orthologue="SPs0223" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00225.out" FT /product="putative oligopeptide transporter permease FT protein" FT /systematic_id="SpyM50229" FT misc_feature join(254176..254244,254380..254448,254485..254553,254563..254631,254692..254751,254779..254847,254866..254934) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="42,64" FT /coord="110,132" FT /coord="145,167" FT /coord="171,193" FT /coord="214,233" FT /coord="243,265" FT /coord="272,294" FT /id="SpyM50229" FT /note="7 probable transmembrane helices predicted for FT SpyM50229 by TMHMM2.0 at aa 42-64, 110-132, 145-167, FT 171-193, 214-233, 243-265 and 272-294" FT /type="TMHMM" FT misc_feature 254371..254976 FT /colour=9 FT /domain="HMMPfam:PF00528;Binding-protein-dependent FT transport syst;1e-36;codon 107-308" FT /id="SpyM50229" FT /label=HMMPfam FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport syst, score 1e-36" FT CDS 254988..256058 FT /M1_GAS_orthologue="SPy0296" FT /MGAS10270_orthologue="MGAS10270_Spy0252" FT /MGAS10394_orthologue="M6_Spy0283" FT /MGAS10750_orthologue="MGAS10750_Spy0249" FT /MGAS2096_orthologue="MGAS2096_Spy0273" FT /MGAS315_orthologue="oppD" FT /MGAS5005_orthologue="M5005_Spy0252" FT /MGAS6180_orthologue="M28_Spy0247" FT /MGAS8232_orthologue="oppD" FT /MGAS9429_orthologue="MGAS9429_Spy0254" FT /SSI_1_orthologue="SPs0224" FT /class="1.5.5" FT /cluster="Spy_40:0030 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00226.out" FT /product="putative oligopeptide transporter ATP-binding FT protein" FT /systematic_id="SpyM50230" FT misc_feature 255099..255695 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;1.5e-62;codon FT 38-236" FT /id="SpyM50230" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.5e-62" FT misc_feature 255120..255143 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 255465..255509 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS 256051..256974 FT /M1_GAS_orthologue="SPy0297" FT /MGAS10270_orthologue="MGAS10270_Spy0253" FT /MGAS10394_orthologue="M6_Spy0284" FT /MGAS10750_orthologue="MGAS10750_Spy0250" FT /MGAS2096_orthologue="MGAS2096_Spy0274" FT /MGAS315_orthologue="oppF" FT /MGAS5005_orthologue="M5005_Spy0253" FT /MGAS6180_orthologue="M28_Spy0248" FT /MGAS8232_orthologue="oppF" FT /MGAS9429_orthologue="MGAS9429_Spy0255" FT /SSI_1_orthologue="SPs0225" FT /class="1.5.5" FT /cluster="Spy_40:0030 2" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00227.out" FT /product="putative oligopeptide transporter ATP-binding FT protein" FT /systematic_id="SpyM50231" FT misc_feature 256153..256731 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;4.9e-54;codon FT 35-227" FT /id="SpyM50231" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.9e-54" FT misc_feature 256174..256197 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 256501..256545 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS complement(join(257122..257388,257396..257548)) FT /class="5.1.4" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.00228.out" FT /note="Probable gene remnant. Similar to the C-terminal FT region of Streptococcus agalactiae (serotype V) IS861 FT transposase OrfA UniProt:Q8CM63 (EMBL:AE014240) (178 aa) FT fasta scores: E()=7.3e-12, 46.565% id in 131 aa" FT /product="putative transposase (fragement)" FT /pseudo FT /similarity="fasta; with=UniProt:Q8CM63 (EMBL:AE014240); FT Streptococcus agalactiae (serotype V).; IS861, transposase FT OrfA.; length=178; id 46.565%; ungapped id 48.031%; FT E()=7.3e-12; 131 aa overlap; query 1-127; subject 44-174" FT /systematic_id="SpyM50231A" FT misc_feature complement(join(257377..257388,257396..257470)) FT /colour=8 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(join(257536..257988,257992..258285)) FT /class="5.1.4" FT /cluster="Spy_40:0013 3" FT /colour=11 FT /fasta_file="fasta/SP_new.tab.seq.01826.out" FT /note="Similar to Lactococcus lactis (subsp. lactis) FT (Streptococcus lactis) transposase for insertion sequence FT element IS904 UniProt:T904_LACLA (EMBL:AE006251) (253 aa) FT fasta scores: E()=4.8e-53, 64.593% id in 209 aa. CDS FT contains a nonsense mutation (opal) after codon 98" FT /product="putative transposase (pseudogene)" FT /pseudo FT /similarity="fasta; with=UniProt:T904_LACLA FT (EMBL:AE006251); Lactococcus lactis (subsp. lactis) FT (Streptococcus lactis).; nisX5; Transposase for insertion FT sequence element IS904.; length=253; id 64.593%; ungapped FT id 64.904%; E()=4.8e-53; 209 aa overlap; query 21-228; FT subject 1-209" FT /systematic_id="SpyM50232" FT misc_feature complement(257602..257961) FT /colour=9 FT /domain="HMMPfam:PF00665;Integrase core FT domain;1.7e-22;codon 109-228" FT /id="SpyM50232" FT /label=HMMPfam FT /note="HMMPfam hit to PF00665, Integrase core domain, FT score 1.7e-22" FT CDS complement(258318..258611) FT /class="5.1.4" FT /colour=12 FT /fasta_file="fasta/SP_new.tab.seq.00230.out" FT /note="Similar to Shigella dysenteriae transposase InsN FT for insertion sequence element IS911 UniProt:INSN_SHIDY FT (EMBL:SDIS911) (112 aa) fasta scores: E()=0.19, 21.053% id FT in 95 aa" FT /product="putative transposase" FT /similarity="fasta; with=UniProt:INSN_SHIDY FT (EMBL:SDIS911); Shigella dysenteriae.; insN; Transposase FT insN for insertion sequence element IS911.; length=112; id FT 21.053%; ungapped id 21.277%; E()=0.19; 95 aa overlap; FT query 1-95; subject 13-106" FT /systematic_id="SpyM50235" FT misc_feature complement(258357..258605) FT /colour=9 FT /domain="HMMPfam:PF01527;Transposase;3.6e-19;codon 3-85" FT /id="SpyM50235" FT /label=HMMPfam FT /note="HMMPfam hit to PF01527, Transposase, score 3.6e-19" FT misc_feature complement(258480..258545) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1008.000, SD 2.62 at aa 23-44, sequence FT QPVKMVSSTLKIHPNSLYRWIQ" FT rRNA 259014..260520 FT /label=16s rRNA FT /note="16s rRNA" FT tRNA 260607..260679 FT /anticodon=(pos:260640..260642,aa:Ala) FT /gene="tRNA-Ala" FT /note="tRNA Ala anticodon TGC, Cove score 73.15" FT /product="transfer RNA-Ala" FT rRNA 260978..263878 FT /label=23s rRNA FT /note="23s rRNA" FT rRNA 263966..264081 FT /label=5s rRNA FT /note="5s rRNA" FT tRNA 264087..264160 FT /anticodon=(pos:264121..264123,aa:Asn) FT /gene="tRNA-Asn" FT /note="tRNA Asn anticodon GTT, Cove score 74.15" FT /product="transfer RNA-Asn" FT tRNA 264240..264313 FT /anticodon=(pos:264274..264276,aa:Arg) FT /gene="tRNA-Arg" FT /note="tRNA Arg anticodon ACG, Cove score 69.55" FT /product="transfer RNA-Arg" FT CDS 264309..264890 FT /MGAS10394_orthologue="M6_Spy1626" FT /MGAS2096_orthologue="MGAS2096_Spy0277" FT /MGAS315_orthologue="comX.1" FT /MGAS8232_orthologue="spyM18_0300" FT /SSI_1_orthologue="SPs1640" FT /class="6.5.0" FT /cluster="Spy_40:0031 2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00231.out" FT /gene="comX1" FT /note="Possible alternate translational start sites. FT Identical to SpyM51595, 100.000% identity (100.000% FT ungapped) in 193 aa overlap" FT /product="putative competence-specific global FT transcription modulator" FT /systematic_id="SpyM50236" FT CDS 265077..265826 FT /EC_number="4.2.1.70" FT /M1_GAS_orthologue="SPy1901" FT /MGAS10270_orthologue="MGAS10270_Spy1685" FT /MGAS10394_orthologue="M6_Spy1625" FT /MGAS10750_orthologue="MGAS10750_Spy1672" FT /MGAS2096_orthologue="MGAS2096_Spy1641" FT /MGAS315_orthologue="truA" FT /MGAS5005_orthologue="M5005_Spy1617" FT /MGAS6180_orthologue="M28_Spy1606" FT /MGAS8232_orthologue="truA" FT /MGAS9429_orthologue="MGAS9429_Spy1620" FT /SSI_1_orthologue="SPs0227" FT /class="4.2.3" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00232.out" FT /gene="truA" FT /product="tRNA pseudouridine synthase A" FT /systematic_id="SpyM50237" FT misc_feature 265092..265391 FT /colour=9 FT /domain="HMMPfam:PF01416;tRNA pseudouridine FT synthase;7.3e-41;codon 6-105" FT /id="SpyM50237" FT /label=HMMPfam FT /note="HMMPfam hit to PF01416, tRNA pseudouridine FT synthase, score 7.3e-41" FT misc_feature 265506..265820 FT /colour=9 FT /domain="HMMPfam:PF01416;tRNA pseudouridine FT synthase;6.1e-33;codon 144-248" FT /id="SpyM50237" FT /label=HMMPfam FT /note="HMMPfam hit to PF01416, tRNA pseudouridine FT synthase, score 6.1e-33" FT CDS 265816..266580 FT /M1_GAS_orthologue="SPy1900" FT /MGAS10270_orthologue="MGAS10270_Spy1684" FT /MGAS10394_orthologue="M6_Spy1624" FT /MGAS10750_orthologue="MGAS10750_Spy1671" FT /MGAS2096_orthologue="MGAS2096_Spy1640" FT /MGAS315_orthologue="thiD" FT /MGAS5005_orthologue="M5005_Spy1616" FT /MGAS6180_orthologue="M28_Spy1605" FT /MGAS8232_orthologue="thiD" FT /MGAS9429_orthologue="MGAS9429_Spy1619" FT /SSI_1_orthologue="SPs0228" FT /class="3.2.14" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00233.out" FT /gene="thiD" FT /product="putative phosphomethylpyrimidine kinase" FT /systematic_id="SpyM50238" FT CDS 266570..267040 FT /M1_GAS_orthologue="SPy1899" FT /MGAS10270_orthologue="MGAS10270_Spy1683" FT /MGAS10394_orthologue="M6_Spy1623" FT /MGAS10750_orthologue="MGAS10750_Spy1670" FT /MGAS2096_orthologue="MGAS2096_Spy1639" FT /MGAS315_orthologue="SpyM3_1637" FT /MGAS5005_orthologue="M5005_Spy1615" FT /MGAS6180_orthologue="M28_Spy1604" FT /MGAS8232_orthologue="spyM18_1964" FT /MGAS9429_orthologue="MGAS9429_Spy1618" FT /SSI_1_orthologue="SPs0229" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00234.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50239" FT misc_feature 266570..266719 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.289" FT /colour=3 FT /coord="50,51" FT /id="SpyM50239" FT /note="Signal peptide predicted for SpyM50239 by SignalP FT 2.0 HMM (Signal peptide probability 0.995) with cleavage FT site probability 0.289 between residues 50 and 51" FT /signal="0.995" FT /type="signalp" FT misc_feature join(266594..266653,266696..266764,266858..266926,266954..267022) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="9,28" FT /coord="43,65" FT /coord="97,119" FT /coord="129,151" FT /id="SpyM50239" FT /note="4 probable transmembrane helices predicted for FT SpyM50239 by TMHMM2.0 at aa 9-28, 43-65, 97-119 and FT 129-151" FT /type="TMHMM" FT misc_feature 266921..267013 FT /colour=8 FT /note="PS00107 Protein kinases ATP-binding region FT signature." FT CDS 267054..267614 FT /M1_GAS_orthologue="SPy1898" FT /MGAS10270_orthologue="MGAS10270_Spy1682" FT /MGAS10394_orthologue="M6_Spy1622" FT /MGAS10750_orthologue="MGAS10750_Spy1669" FT /MGAS2096_orthologue="MGAS2096_Spy1638" FT /MGAS315_orthologue="SpyM3_1636" FT /MGAS5005_orthologue="M5005_Spy1614" FT /MGAS6180_orthologue="M28_Spy1603" FT /MGAS8232_orthologue="spyM18_1963" FT /MGAS9429_orthologue="MGAS9429_Spy1617" FT /SSI_1_orthologue="SPs0230" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00235.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50240" FT misc_feature 267072..267587 FT /colour=9 FT /domain="HMMPfam:PF04260;Protein of unknown function FT (DUF436);1.2e-127;codon 7-178" FT /id="SpyM50240" FT /label=HMMPfam FT /note="HMMPfam hit to PF04260, Protein of unknown function FT (DUF436), score 1.2e-127" FT CDS complement(267679..268524) FT /M1_GAS_orthologue="SPy1897" FT /MGAS10270_orthologue="MGAS10270_Spy1681" FT /MGAS10394_orthologue="M6_Spy1621" FT /MGAS10750_orthologue="MGAS10750_Spy1668" FT /MGAS2096_orthologue="MGAS2096_Spy1637" FT /MGAS315_orthologue="SpyM3_1635" FT /MGAS5005_orthologue="M5005_Spy1613" FT /MGAS6180_orthologue="M28_Spy1602" FT /MGAS8232_orthologue="spyM18_1962" FT /MGAS9429_orthologue="MGAS9429_Spy1616" FT /SSI_1_orthologue="SPs0231" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00236.out" FT /product="mechanosensitive ion channel protein" FT /systematic_id="SpyM50241" FT misc_feature complement(267715..268311) FT /colour=9 FT /domain="HMMPfam:PF00924;Mechanosensitive ion FT channel;3.3e-52;codon 72-270" FT /id="SpyM50241" FT /label=HMMPfam FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel, score 3.3e-52" FT misc_feature complement(join(268147..268215,268243..268311,268414..268482)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="15,37" FT /coord="72,94" FT /coord="104,126" FT /id="SpyM50241" FT /note="3 probable transmembrane helices predicted for FT SpyM50241 by TMHMM2.0 at aa 15-37, 72-94 and 104-126" FT /type="TMHMM" FT CDS 268845..270128 FT /EC_number="5.2.1.8" FT /M1_GAS_orthologue="SPy1896" FT /MGAS10270_orthologue="MGAS10270_Spy1680" FT /MGAS10394_orthologue="M6_Spy1620" FT /MGAS10750_orthologue="MGAS10750_Spy1667" FT /MGAS315_orthologue="ropA" FT /MGAS5005_orthologue="M5005_Spy1612" FT /MGAS6180_orthologue="M28_Spy1601" FT /MGAS8232_orthologue="ropA" FT /MGAS9429_orthologue="MGAS9429_Spy1615" FT /SSI_1_orthologue="SPs0232" FT /class="1.3.1" FT /colour=0 FT /fasta_file="fasta/SP_new.tab.seq.00237.out" FT /gene="tig" FT /product="trigger factor (prolyl isomerase)" FT /systematic_id="SpyM50242" FT misc_feature 268845..269303 FT /colour=9 FT /domain="HMMPfam:PF05697;Bacterial trigger factor protein FT (TF);3.1e-64;codon 1-153" FT /id="SpyM50242" FT /label=HMMPfam FT /note="HMMPfam hit to PF05697, Bacterial trigger factor FT protein (TF), score 3.1e-64" FT misc_feature 269310..269564 FT /colour=9 FT /domain="HMMPfam:PF00254;FKBP-type peptidyl-prolyl FT cis-trans isomera;8.5e-26;codon 156-240" FT /id="SpyM50242" FT /label=HMMPfam FT /note="HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl FT cis-trans isomera, score 8.5e-26" FT misc_feature 269565..270095 FT /colour=9 FT /domain="HMMPfam:PF05698;Bacterial trigger factor protein FT (TF) C-ter;2.7e-69;codon 241-417" FT /id="SpyM50242" FT /label=HMMPfam FT /note="HMMPfam hit to PF05698, Bacterial trigger factor FT protein (TF) C-ter, score 2.7e-69" FT CDS 270345..270920 FT /EC_number="2.7.7.6" FT /M1_GAS_orthologue="SPy1895" FT /MGAS10270_orthologue="MGAS10270_Spy1679" FT /MGAS10394_orthologue="M6_Spy1619" FT /MGAS10750_orthologue="MGAS10750_Spy1666" FT /MGAS2096_orthologue="MGAS2096_Spy1634" FT /MGAS315_orthologue="rpoE" FT /MGAS5005_orthologue="M5005_Spy1611" FT /MGAS6180_orthologue="M28_Spy1600" FT /MGAS8232_orthologue="rpoE" FT /MGAS9429_orthologue="MGAS9429_Spy1614" FT /SSI_1_orthologue="SPs0233" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00238.out" FT /gene="rpoE" FT /product="putative DNA-directed RNA polymerase, delta FT subunit" FT /systematic_id="SpyM50243" FT misc_feature 270345..270914 FT /colour=9 FT /domain="HMMPfam:PF05066;DNA-directed RNA polymerase delta FT subun;1.8e-113;codon 12-201" FT /id="SpyM50243" FT /label=HMMPfam FT /note="HMMPfam hit to PF05066, DNA-directed RNA polymerase FT delta subun, score 1.8e-113" FT CDS 271177..272781 FT /EC_number="6.3.4.2" FT /M1_GAS_orthologue="SPy1894" FT /MGAS10270_orthologue="MGAS10270_Spy1678" FT /MGAS10394_orthologue="M6_Spy1618" FT /MGAS10750_orthologue="MGAS10750_Spy1665" FT /MGAS2096_orthologue="MGAS2096_Spy1633" FT /MGAS315_orthologue="pyrG" FT /MGAS5005_orthologue="M5005_Spy1609" FT /MGAS6180_orthologue="M28_Spy1599" FT /MGAS8232_orthologue="pyrG" FT /MGAS9429_orthologue="MGAS9429_Spy1613" FT /SSI_1_orthologue="SPs0234" FT /class="3.7.2" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00239.out" FT /gene="pyrG" FT /product="putative CTP synthase" FT /systematic_id="SpyM50244" FT misc_feature 271180..272013 FT /colour=9 FT /domain="HMMPfam:PF06418;CTP synthase FT N-terminus;9.9e-217;codon 2-279" FT /id="SpyM50244" FT /label=HMMPfam FT /note="HMMPfam hit to PF06418, CTP synthase N-terminus, FT score 9.9e-217" FT misc_feature 272077..272760 FT /colour=9 FT /domain="HMMPfam:PF00117;Glutamine amidotransferase FT class-I;8.8e-71;codon 301-528" FT /id="SpyM50244" FT /label=HMMPfam FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I, score 8.8e-71" FT CDS 272949..273875 FT /M1_GAS_orthologue="SPy1892" FT /MGAS10270_orthologue="MGAS10270_Spy1677" FT /MGAS10394_orthologue="M6_Spy1617" FT /MGAS10750_orthologue="MGAS10750_Spy1664" FT /MGAS2096_orthologue="MGAS2096_Spy1632" FT /MGAS315_orthologue="SpyM3_1631" FT /MGAS5005_orthologue="M5005_Spy1608" FT /MGAS6180_orthologue="M28_Spy1598" FT /MGAS8232_orthologue="spyM18_1957" FT /MGAS9429_orthologue="MGAS9429_Spy1611" FT /class="4.1.7" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00240.out" FT /product="putative exported protein" FT /systematic_id="SpyM50245" FT misc_feature 272949..273056 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.397" FT /colour=3 FT /coord="36,37" FT /id="SpyM50245" FT /note="Signal peptide predicted for SpyM50245 by SignalP FT 2.0 HMM (Signal peptide probability 0.964) with cleavage FT site probability 0.397 between residues 36 and 37" FT /signal="0.964" FT /type="signalp" FT misc_feature 272973..273041 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="9,31" FT /id="SpyM50245" FT /note="1 probable transmembrane helix predicted for FT SpyM50245 by TMHMM2.0 at aa 9-31" FT /type="TMHMM" FT tRNA 273929..274014 FT /anticodon=(pos:273963..273965,aa:Leu) FT /gene="tRNA-Leu" FT /note="tRNA Leu anticodon AAG, Cove score 53.84" FT /product="transfer RNA-Leu" FT CDS 274222..275103 FT /EC_number="4.1.2.13" FT /M1_GAS_orthologue="SPy1889" FT /MGAS10270_orthologue="MGAS10270_Spy1676" FT /MGAS10394_orthologue="M6_Spy1616" FT /MGAS10750_orthologue="MGAS10750_Spy1663" FT /MGAS2096_orthologue="MGAS2096_Spy1631" FT /MGAS315_orthologue="fba" FT /MGAS5005_orthologue="M5005_Spy1607" FT /MGAS6180_orthologue="M28_Spy1597" FT /MGAS8232_orthologue="spyM18_1954" FT /MGAS9429_orthologue="MGAS9429_Spy1610" FT /SSI_1_orthologue="SPs0237" FT /class="3.4.3" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00241.out" FT /gene="fba" FT /product="fructose-bisphosphate aldolase" FT /systematic_id="SpyM50246" FT misc_feature 274228..275100 FT /colour=9 FT /domain="HMMPfam:PF01116;Fructose-bisphosphate aldolase FT class-II;4e-110;codon 3-293" FT /id="SpyM50246" FT /label=HMMPfam FT /note="HMMPfam hit to PF01116, Fructose-bisphosphate FT aldolase class-II, score 4e-110" FT misc_feature 274441..274482 FT /colour=8 FT /note="PS00602 Fructose-bisphosphate aldolase class-II FT signature 1." FT misc_feature 274618..274653 FT /colour=8 FT /note="PS00806 Fructose-bisphosphate aldolase class-II FT signature 2." FT CDS 275485..275673 FT /M1_GAS_orthologue="SPy1888" FT /MGAS10270_orthologue="MGAS10270_Spy1675" FT /MGAS10394_orthologue="M6_Spy1615" FT /MGAS10750_orthologue="MGAS10750_Spy1662" FT /MGAS2096_orthologue="MGAS2096_Spy1630" FT /MGAS315_orthologue="rpmB" FT /MGAS5005_orthologue="M5005_Spy1606" FT /MGAS6180_orthologue="M28_Spy1596" FT /MGAS8232_orthologue="rl28" FT /MGAS9429_orthologue="MGAS9429_Spy1609" FT /SSI_1_orthologue="SPs0238" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00242.out" FT /gene="rpmB" FT /product="50S ribosomal protein L28" FT /systematic_id="SpyM50247" FT misc_feature 275491..275667 FT /colour=9 FT /domain="HMMPfam:PF00830;Ribosomal L28 FT family;2.9e-24;codon 3-61" FT /id="SpyM50247" FT /label=HMMPfam FT /note="HMMPfam hit to PF00830, Ribosomal L28 family, score FT 2.9e-24" FT CDS 275825..276190 FT /M1_GAS_orthologue="SPy1886" FT /MGAS10270_orthologue="MGAS10270_Spy1674" FT /MGAS10394_orthologue="M6_Spy1614" FT /MGAS10750_orthologue="MGAS10750_Spy1661" FT /MGAS2096_orthologue="MGAS2096_Spy1629" FT /MGAS315_orthologue="asp" FT /MGAS5005_orthologue="M5005_Spy1603" FT /MGAS6180_orthologue="M28_Spy1595" FT /MGAS8232_orthologue="spyM18_1951" FT /MGAS9429_orthologue="MGAS9429_Spy1608" FT /SSI_1_orthologue="SPs0239" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00243.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50248" FT misc_feature 275846..276172 FT /colour=9 FT /domain="HMMPfam:PF03780;Protein of unknown function FT (DUF322);9.5e-54;codon 8-116" FT /id="SpyM50248" FT /label=HMMPfam FT /note="HMMPfam hit to PF03780, Protein of unknown function FT (DUF322), score 9.5e-54" FT CDS 276190..277854 FT /M1_GAS_orthologue="SPy1885" FT /MGAS10270_orthologue="MGAS10270_Spy1673" FT /MGAS10394_orthologue="M6_Spy1613" FT /MGAS10750_orthologue="MGAS10750_Spy1660" FT /MGAS2096_orthologue="MGAS2096_Spy1628" FT /MGAS315_orthologue="SpyM3_1627" FT /MGAS5005_orthologue="M5005_Spy1602" FT /MGAS6180_orthologue="M28_Spy1594" FT /MGAS8232_orthologue="spyM18_1950" FT /MGAS9429_orthologue="MGAS9429_Spy1607" FT /SSI_1_orthologue="SPs0240" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00244.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50249" FT misc_feature 276289..276786 FT /colour=9 FT /domain="HMMPfam:PF02734;DAK2 domain;7.4e-76;codon 34-199" FT /id="SpyM50249" FT /label=HMMPfam FT /note="HMMPfam hit to PF02734, DAK2 domain, score 7.4e-76" FT CDS 278091..278981 FT /M1_GAS_orthologue="SPy1884" FT /MGAS10270_orthologue="MGAS10270_Spy1672" FT /MGAS10394_orthologue="M6_Spy1612" FT /MGAS10750_orthologue="MGAS10750_Spy1659" FT /MGAS2096_orthologue="MGAS2096_Spy1627" FT /MGAS315_orthologue="SpyM3_1626" FT /MGAS5005_orthologue="M5005_Spy1601" FT /MGAS6180_orthologue="M28_Spy1593" FT /MGAS8232_orthologue="spyM18_1949" FT /MGAS9429_orthologue="MGAS9429_Spy1606" FT /SSI_1_orthologue="SPs0241" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00245.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50250" FT misc_feature 278091..278171 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.460" FT /colour=3 FT /coord="27,28" FT /id="SpyM50250" FT /note="Signal peptide predicted for SpyM50250 by SignalP FT 2.0 HMM (Signal peptide probability 0.875) with cleavage FT site probability 0.460 between residues 27 and 28" FT /signal="0.875" FT /type="signalp" FT misc_feature 278100..278168 FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="4,26" FT /id="SpyM50250" FT /note="1 probable transmembrane helix predicted for FT SpyM50250 by TMHMM2.0 at aa 4-26" FT /type="TMHMM" FT misc_feature 278157..278684 FT /colour=9 FT /domain="HMMPfam:PF01145;SPFH domain / Band;5.3e-46;codon FT 23-198" FT /id="SpyM50250" FT /label=HMMPfam FT /note="HMMPfam hit to PF01145, SPFH domain / Band, score FT 5.3e-46" FT CDS 279211..280065 FT /M1_GAS_orthologue="SPy1882" FT /MGAS10270_orthologue="MGAS10270_Spy1671" FT /MGAS10394_orthologue="M6_Spy1611" FT /MGAS10750_orthologue="MGAS10750_Spy1658" FT /MGAS2096_orthologue="MGAS2096_Spy1626" FT /MGAS315_orthologue="lppC" FT /MGAS5005_orthologue="M5005_Spy1600" FT /MGAS6180_orthologue="M28_Spy1592" FT /MGAS8232_orthologue="spyM18_1947" FT /MGAS9429_orthologue="MGAS9429_Spy1605" FT /SSI_1_orthologue="SPs0242" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00246.out" FT /product="putative acid phosphatase" FT /systematic_id="SpyM50251" FT misc_feature 279211..279285 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.601" FT /colour=3 FT /coord="25,26" FT /id="SpyM50251" FT /note="Signal peptide predicted for SpyM50251 by SignalP FT 2.0 HMM (Signal peptide probability 1.000) with cleavage FT site probability 0.601 between residues 25 and 26" FT /signal="1.000" FT /type="signalp" FT misc_feature 279244..279276 FT /colour=8 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 279361..279981 FT /colour=9 FT /domain="HMMPfam:PF03767;HAD superfamily, subfamily IIIB FT (Acid;1.9e-87;codon 51-257" FT /id="SpyM50251" FT /label=HMMPfam FT /note="HMMPfam hit to PF03767, HAD superfamily, subfamily FT IIIB (Acid, score 1.9e-87" FT CDS 280258..281454 FT /EC_number="2.7.2.3" FT /M1_GAS_orthologue="SPy1881" FT /MGAS10394_orthologue="M6_Spy1610" FT /MGAS10750_orthologue="MGAS10750_Spy1657" FT /MGAS2096_orthologue="MGAS2096_Spy1625" FT /MGAS315_orthologue="pgk" FT /MGAS5005_orthologue="M5005_Spy1599" FT /MGAS6180_orthologue="M28_Spy1591" FT /MGAS8232_orthologue="pgk" FT /MGAS9429_orthologue="MGAS9429_Spy1604" FT /SSI_1_orthologue="SPs0243" FT /class="3.5.5" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00247.out" FT /gene="pgk" FT /product="phosphoglycerate kinase" FT /systematic_id="SpyM50252" FT misc_feature 280258..281451 FT /colour=9 FT /domain="HMMPfam:PF00162;Phosphoglycerate FT kinase;1.7e-190;codon 1-398" FT /id="SpyM50252" FT /label=HMMPfam FT /note="HMMPfam hit to PF00162, Phosphoglycerate kinase, FT score 1.7e-190" FT misc_feature 280300..280332 FT /colour=8 FT /note="PS00111 Phosphoglycerate kinase signature." FT CDS 281717..282268 FT /M1_GAS_orthologue="SPy1879" FT /MGAS10270_orthologue="MGAS10270_Spy1669" FT /MGAS10394_orthologue="M6_Spy1609" FT /MGAS10750_orthologue="MGAS10750_Spy1656" FT /MGAS2096_orthologue="MGAS2096_Spy1624" FT /MGAS315_orthologue="SpyM3_1623" FT /MGAS5005_orthologue="M5005_Spy1598" FT /MGAS6180_orthologue="M28_Spy1590" FT /MGAS8232_orthologue="spyM18_1944" FT /MGAS9429_orthologue="MGAS9429_Spy1603" FT /SSI_1_orthologue="SPs0244" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00248.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50253" FT misc_feature 281717..281866 FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.269" FT /colour=3 FT /coord="50,51" FT /id="SpyM50253" FT /note="Signal peptide predicted for SpyM50253 by SignalP FT 2.0 HMM (Signal peptide probability 0.732) with cleavage FT site probability 0.269 between residues 50 and 51" FT /signal="0.732" FT /type="signalp" FT misc_feature join(281801..281869,281912..281980,281999..282067,282080..282148) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="29,51" FT /coord="66,88" FT /coord="95,117" FT /coord="122,144" FT /id="SpyM50253" FT /note="4 probable transmembrane helices predicted for FT SpyM50253 by TMHMM2.0 at aa 29-51, 66-88, 95-117 and FT 122-144" FT /type="TMHMM" FT CDS 282335..282706 FT /M1_GAS_orthologue="SPy1878" FT /MGAS10270_orthologue="MGAS10270_Spy1668" FT /MGAS10394_orthologue="M6_Spy1608" FT /MGAS10750_orthologue="MGAS10750_Spy1655" FT /MGAS2096_orthologue="MGAS2096_Spy1623" FT /MGAS315_orthologue="glnR" FT /MGAS5005_orthologue="M5005_Spy1597" FT /MGAS6180_orthologue="M28_Spy1589" FT /MGAS8232_orthologue="glnR" FT /MGAS9429_orthologue="MGAS9429_Spy1602" FT /SSI_1_orthologue="SPs0245" FT /class="6.3.12" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00249.out" FT /gene="glnR" FT /product="MerR family regulatory protein" FT /systematic_id="SpyM50254" FT misc_feature 282374..282484 FT /colour=9 FT /domain="HMMPfam:PF00376;MerR family regulatory FT protein;3.9e-10;codon 14-50" FT /id="SpyM50254" FT /label=HMMPfam FT /note="HMMPfam hit to PF00376, MerR family regulatory FT protein, score 3.9e-10" FT misc_feature 282380..282448 FT /colour=8 FT /note="PS00552 Bacterial regulatory proteins, merR family FT signature." FT CDS 282744..284090 FT /EC_number="6.3.1.2" FT /M1_GAS_orthologue="SPy1877" FT /MGAS10270_orthologue="MGAS10270_Spy1667" FT /MGAS10394_orthologue="M6_Spy1607" FT /MGAS10750_orthologue="MGAS10750_Spy1654" FT /MGAS2096_orthologue="MGAS2096_Spy1622" FT /MGAS315_orthologue="glnA" FT /MGAS5005_orthologue="M5005_Spy1596" FT /MGAS6180_orthologue="M28_Spy1588" FT /MGAS8232_orthologue="glnA" FT /MGAS9429_orthologue="MGAS9429_Spy1601" FT /SSI_1_orthologue="SPs0246" FT /class="3.1.08" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00250.out" FT /gene="glnA" FT /product="putative glutamine synthetase" FT /systematic_id="SpyM50255" FT misc_feature 282789..283046 FT /colour=9 FT /domain="HMMPfam:PF03951;Glutamine synthetase, beta-Grasp FT domain;1.9e-39;codon 16-101" FT /id="SpyM50255" FT /label=HMMPfam FT /note="HMMPfam hit to PF03951, Glutamine synthetase, FT beta-Grasp domain, score 1.9e-39" FT misc_feature 282900..282956 FT /colour=8 FT /note="PS00180 Glutamine synthetase signature 1." FT misc_feature 283059..283829 FT /colour=9 FT /domain="HMMPfam:PF00120;Glutamine synthetase, catalytic FT domain;1e-142;codon 106-362" FT /id="SpyM50255" FT /label=HMMPfam FT /note="HMMPfam hit to PF00120, Glutamine synthetase, FT catalytic domain, score 1e-142" FT CDS complement(284318..286000) FT /M1_GAS_orthologue="SPy1876" FT /MGAS10270_orthologue="MGAS10270_Spy1666" FT /MGAS10394_orthologue="M6_Spy1606" FT /MGAS10750_orthologue="MGAS10750_Spy1653" FT /MGAS2096_orthologue="MGAS2096_Spy1621" FT /MGAS315_orthologue="SpyM3_1620" FT /MGAS5005_orthologue="M5005_Spy1595" FT /MGAS6180_orthologue="M28_Spy1587" FT /MGAS8232_orthologue="spyM18_1941" FT /MGAS9429_orthologue="MGAS9429_Spy1600" FT /SSI_1_orthologue="SPs0247" FT /class="7.0.0" FT /cluster="Spy_40:0032 2" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00251.out" FT /product="metallo-beta-lactamase superfamily protein" FT /systematic_id="SpyM50256" FT misc_feature complement(284813..284935) FT /colour=9 FT /domain="HMMPfam:PF07521;RNA-metabolising FT metallo-beta-lactamase;1.3e-14;codon 356-396" FT /id="SpyM50256" FT /label=HMMPfam FT /note="HMMPfam hit to PF07521, RNA-metabolising FT metallo-beta-lactamase, score 1.3e-14" FT misc_feature complement(284819..284905) FT /colour=8 FT /note="PS01292 Uncharacterized protein family UPF0036 FT signature." FT misc_feature complement(285329..285934) FT /colour=9 FT /domain="HMMPfam:PF00753;Metallo-beta-lactamase FT superfamily;1.2e-29;codon 23-224" FT /id="SpyM50256" FT /label=HMMPfam FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 1.2e-29" FT CDS complement(286002..286232) FT /M1_GAS_orthologue="SPy1875" FT /MGAS10270_orthologue="MGAS10270_Spy1665" FT /MGAS10394_orthologue="M6_Spy1605" FT /MGAS10750_orthologue="MGAS10750_Spy1652" FT /MGAS2096_orthologue="MGAS2096_Spy1620" FT /MGAS315_orthologue="SpyM3_1619" FT /MGAS5005_orthologue="M5005_Spy1594" FT /MGAS6180_orthologue="M28_Spy1586" FT /MGAS8232_orthologue="spyM18_1940" FT /MGAS9429_orthologue="MGAS9429_Spy1599" FT /SSI_1_orthologue="SPs0248" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00252.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50257" FT misc_feature complement(286005..286229) FT /colour=9 FT /domain="HMMPfam:PF07288;Protein of unknown function FT (DUF1447);1.4e-51;codon 2-76" FT /id="SpyM50257" FT /label=HMMPfam FT /note="HMMPfam hit to PF07288, Protein of unknown function FT (DUF1447), score 1.4e-51" FT CDS 286516..287214 FT /M1_GAS_orthologue="SPy1874" FT /MGAS10270_orthologue="MGAS10270_Spy1664" FT /MGAS10394_orthologue="M6_Spy1604" FT /MGAS10750_orthologue="MGAS10750_Spy1651" FT /MGAS2096_orthologue="MGAS2096_Spy1619" FT /MGAS315_orthologue="SpyM3_1618" FT /MGAS5005_orthologue="M5005_Spy1593" FT /MGAS6180_orthologue="M28_Spy1585" FT /MGAS8232_orthologue="spyM18_1939" FT /MGAS9429_orthologue="MGAS9429_Spy1598" FT /SSI_1_orthologue="SPs0249" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00253.out" FT /product="glycoprotease family protein" FT /systematic_id="SpyM50258" FT misc_feature 286588..286839 FT /colour=9 FT /domain="HMMPfam:PF00814;Glycoprotease FT family;7.2e-21;codon 36-119" FT /id="SpyM50258" FT /label=HMMPfam FT /note="HMMPfam hit to PF00814, Glycoprotease family, score FT 7.2e-21" FT misc_feature 286891..286914 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 287216..287641 FT /M1_GAS_orthologue="SPy1873" FT /MGAS10270_orthologue="MGAS10270_Spy1663" FT /MGAS10394_orthologue="M6_Spy1603" FT /MGAS10750_orthologue="MGAS10750_Spy1650" FT /MGAS2096_orthologue="MGAS2096_Spy1618" FT /MGAS315_orthologue="SpyM3_1617" FT /MGAS5005_orthologue="M5005_Spy1592" FT /MGAS6180_orthologue="M28_Spy1584" FT /MGAS8232_orthologue="rimI" FT /MGAS9429_orthologue="MGAS9429_Spy1597" FT /SSI_1_orthologue="SPs0250" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00254.out" FT /product="acetyltransferase (GNAT) family protein" FT /systematic_id="SpyM50259" FT misc_feature 287336..287557 FT /colour=9 FT /domain="HMMPfam:PF00583;Acetyltransferase (GNAT) FT family;9.3e-15;codon 41-114" FT /id="SpyM50259" FT /label=HMMPfam FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 9.3e-15" FT CDS 287631..288659 FT /EC_number="3.4.24.57" FT /M1_GAS_orthologue="SPy1872" FT /MGAS10270_orthologue="MGAS10270_Spy1662" FT /MGAS10394_orthologue="M6_Spy1602" FT /MGAS10750_orthologue="MGAS10750_Spy1649" FT /MGAS315_orthologue="gcp" FT /MGAS5005_orthologue="M5005_Spy1591" FT /MGAS6180_orthologue="M28_Spy1583" FT /MGAS8232_orthologue="spyM18_1937" FT /MGAS9429_orthologue="MGAS9429_Spy1596" FT /SSI_1_orthologue="SPs0251" FT /class="2.1.4" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00255.out" FT /product="putative glycoprotease" FT /systematic_id="SpyM50260" FT misc_feature 287757..288023 FT /colour=9 FT /domain="HMMPfam:PF00814;Glycoprotease FT family;2.8e-20;codon 43-131" FT /id="SpyM50260" FT /label=HMMPfam FT /note="HMMPfam hit to PF00814, Glycoprotease family, score FT 2.8e-20" FT CDS complement(288830..289099) FT /M1_GAS_orthologue="SPy1871" FT /MGAS10270_orthologue="MGAS10270_Spy1661" FT /MGAS10394_orthologue="M6_Spy1601" FT /MGAS10750_orthologue="MGAS10750_Spy1648" FT /MGAS2096_orthologue="MGAS2096_Spy1615" FT /MGAS315_orthologue="rpsN.2" FT /MGAS5005_orthologue="M5005_Spy1590" FT /MGAS6180_orthologue="M28_Spy1582" FT /MGAS8232_orthologue="rs14" FT /MGAS9429_orthologue="MGAS9429_Spy1595" FT /SSI_1_orthologue="SPs0252" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00256.out" FT /gene="rpsN" FT /product="30S ribosomal protein S14" FT /systematic_id="SpyM50261" FT misc_feature complement(288836..289000) FT /colour=9 FT /domain="HMMPfam:PF00253;Ribosomal protein FT S14p/S29e;1.7e-15;codon 34-88" FT /id="SpyM50261" FT /label=HMMPfam FT /note="HMMPfam hit to PF00253, Ribosomal protein FT S14p/S29e, score 1.7e-15" FT CDS complement(289320..290078) FT /M1_GAS_orthologue="SPy1870" FT /MGAS10270_orthologue="MGAS10270_Spy1660" FT /MGAS10394_orthologue="M6_Spy1600" FT /MGAS10750_orthologue="MGAS10750_Spy1647" FT /MGAS2096_orthologue="MGAS2096_Spy1614" FT /MGAS315_orthologue="SpyM3_1614" FT /MGAS5005_orthologue="M5005_Spy1589" FT /MGAS6180_orthologue="M28_Spy1581" FT /MGAS8232_orthologue="spyM18_1935" FT /MGAS9429_orthologue="MGAS9429_Spy1594" FT /SSI_1_orthologue="SPs0253" FT /class="6.3.03" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00257.out" FT /product="GntR family regulatory protein" FT /systematic_id="SpyM50262" FT misc_feature complement(289848..290039) FT /colour=9 FT /domain="HMMPfam:PF00392;Bacterial regulatory proteins, FT gntR family;8.9e-17;codon 14-77" FT /id="SpyM50262" FT /label=HMMPfam FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 8.9e-17" FT misc_feature complement(289896..289970) FT /colour=8 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT misc_feature complement(289902..289967) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1454.000, SD 4.14 at aa 38-59, sequence FT PSEPELARQLNVSRMTLRKSLA" FT CDS 290318..291097 FT /EC_number="2.4.2.3" FT /M1_GAS_orthologue="SPy1869" FT /MGAS10270_orthologue="MGAS10270_Spy1658" FT /MGAS10394_orthologue="M6_Spy1599" FT /MGAS10750_orthologue="MGAS10750_Spy1645" FT /MGAS2096_orthologue="MGAS2096_Spy1612" FT /MGAS315_orthologue="udp" FT /MGAS5005_orthologue="M5005_Spy1587" FT /MGAS6180_orthologue="M28_Spy1580" FT /MGAS8232_orthologue="udp" FT /MGAS9429_orthologue="MGAS9429_Spy1592" FT /SSI_1_orthologue="SPs0254" FT /class="3.4.5" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00258.out" FT /gene="udp" FT /product="putative uridine phosphorylase" FT /systematic_id="SpyM50263" FT misc_feature 290384..291064 FT /colour=9 FT /domain="HMMPfam:PF01048;Phosphorylase FT family;1.1e-44;codon 23-249" FT /id="SpyM50263" FT /label=HMMPfam FT /note="HMMPfam hit to PF01048, Phosphorylase family, score FT 1.1e-44" FT misc_feature 290522..290569 FT /colour=8 FT /note="PS01232 Purine and other phosphorylases family 1 FT signature." FT CDS 291118..292320 FT /M1_GAS_orthologue="SPy1868" FT /MGAS10270_orthologue="MGAS10270_Spy1657" FT /MGAS10394_orthologue="M6_Spy1598" FT /MGAS10750_orthologue="MGAS10750_Spy1644" FT /MGAS2096_orthologue="MGAS2096_Spy1611" FT /MGAS315_orthologue="nupC" FT /MGAS5005_orthologue="M5005_Spy1586" FT /MGAS6180_orthologue="M28_Spy1579" FT /MGAS8232_orthologue="spyM18_1932" FT /MGAS9429_orthologue="MGAS9429_Spy1591" FT /SSI_1_orthologue="SPs0255" FT /class="1.5.5" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00259.out" FT /product="putative Na+ dependent nucleoside transporter" FT /systematic_id="SpyM50264" FT misc_feature 291118..291363 FT /colour=9 FT /domain="HMMPfam:PF01773;Na+ dependent nucleoside FT transporter N;1.5e-30;codon 5-86" FT /id="SpyM50264" FT /label=HMMPfam FT /note="HMMPfam hit to PF01773, Na+ dependent nucleoside FT transporter N, score 1.5e-30" FT misc_feature join(291124..291183,291196..291264,291283..291351,291409..291477,291619..291687,291697..291765,291889..291957,292135..292203,292240..292308) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /coord="31,53" FT /coord="60,82" FT /coord="102,124" FT /coord="172,194" FT /coord="198,220" FT /coord="262,284" FT /coord="344,366" FT /coord="379,401" FT /id="SpyM50264" FT /note="9 probable transmembrane helices predicted for FT SpyM50264 by TMHMM2.0 at aa 7-26, 31-53, 60-82, 102-124, FT 172-194, 198-220, 262-284, 344-366 and 379-401" FT /type="TMHMM" FT misc_feature 291394..291702 FT /colour=9 FT /domain="HMMPfam:PF07670;Nucleoside FT recognition;3.8e-12;codon 97-199" FT /id="SpyM50264" FT /label=HMMPfam FT /note="HMMPfam hit to PF07670, Nucleoside recognition, FT score 3.8e-12" FT misc_feature 291706..292311 FT /colour=9 FT /domain="HMMPfam:PF07662;Na+ dependent nucleoside FT transporter C;1.2e-102;codon 201-402" FT /id="SpyM50264" FT /label=HMMPfam FT /note="HMMPfam hit to PF07662, Na+ dependent nucleoside FT transporter C, score 1.2e-102" FT CDS 292350..293021 FT /EC_number="4.1.2.4" FT /M1_GAS_orthologue="SPy1867" FT /MGAS10270_orthologue="MGAS10270_Spy1656" FT /MGAS10394_orthologue="M6_Spy1597" FT /MGAS10750_orthologue="MGAS10750_Spy1643" FT /MGAS2096_orthologue="MGAS2096_Spy1610" FT /MGAS315_orthologue="deoC" FT /MGAS5005_orthologue="M5005_Spy1585" FT /MGAS6180_orthologue="M28_Spy1578" FT /MGAS8232_orthologue="deoC" FT /MGAS9429_orthologue="MGAS9429_Spy1590" FT /SSI_1_orthologue="SPs0256" FT /class="3.3.11" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00260.out" FT /gene="deoC" FT /product="deoxyribose-phosphate aldolase" FT /systematic_id="SpyM50265" FT misc_feature 292359..292991 FT /colour=9 FT /domain="HMMPfam:PF01791;Deoxyribose-phosphate FT aldolase;3.6e-70;codon 4-214" FT /id="SpyM50265" FT /label=HMMPfam FT /note="HMMPfam hit to PF01791, Deoxyribose-phosphate FT aldolase, score 3.6e-70" FT CDS complement(293116..294285) FT /M1_GAS_orthologue="SPy1866" FT /MGAS10270_orthologue="MGAS10270_Spy1655" FT /MGAS10394_orthologue="M6_Spy1596" FT /MGAS10750_orthologue="MGAS10750_Spy1642" FT /MGAS2096_orthologue="MGAS2096_Spy1609" FT /MGAS315_orthologue="SpyM3_1610" FT /MGAS5005_orthologue="M5005_Spy1584" FT /MGAS6180_orthologue="M28_Spy1577" FT /MGAS8232_orthologue="spyM18_1930" FT /MGAS9429_orthologue="MGAS9429_Spy1589" FT /SSI_1_orthologue="SPs0257" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00261.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50266" FT misc_feature complement(293137..294144) FT /colour=9 FT /domain="HMMPfam:PF03486;HI0933-like FT protein;1.4e-196;codon 48-383" FT /id="SpyM50266" FT /label=HMMPfam FT /note="HMMPfam hit to PF03486, HI0933-like protein, score FT 1.4e-196" FT misc_feature complement(294208..294267) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /id="SpyM50266" FT /note="1 probable transmembrane helix predicted for FT SpyM50266 by TMHMM2.0 at aa 7-26" FT /type="TMHMM" FT CDS 294467..295018 FT /M1_GAS_orthologue="SPy1865" FT /MGAS10270_orthologue="MGAS10270_Spy1650" FT /MGAS10394_orthologue="M6_Spy1595" FT /MGAS10750_orthologue="MGAS10750_Spy1641" FT /MGAS2096_orthologue="MGAS2096_Spy1608" FT /MGAS315_orthologue="SpyM3_1609" FT /MGAS5005_orthologue="M5005_Spy1583" FT /MGAS6180_orthologue="M28_Spy1571" FT /MGAS8232_orthologue="spyM18_1929" FT /MGAS9429_orthologue="MGAS9429_Spy1588" FT /SSI_1_orthologue="SPs0258" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00262.out" FT /product="putative DNA-binding protein" FT /systematic_id="SpyM50267" FT misc_feature 294500..294565 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1868.000, SD 5.55 at aa 12-33, sequence FT KTVSELADILGVSRQAVNNRVK" FT misc_feature 294785..294928 FT /colour=9 FT /domain="HMMPfam:PF04394;Protein of unknown function, FT DUF536;7.3e-15;codon 107-154" FT /id="SpyM50267" FT /label=HMMPfam FT /note="HMMPfam hit to PF04394, Protein of unknown FT function, DUF536, score 7.3e-15" FT CDS 295028..295654 FT /M1_GAS_orthologue="SPy1864" FT /MGAS10270_orthologue="MGAS10270_Spy1649" FT /MGAS10394_orthologue="M6_Spy1594" FT /MGAS10750_orthologue="MGAS10750_Spy1640" FT /MGAS2096_orthologue="MGAS2096_Spy1607" FT /MGAS315_orthologue="dnaQ" FT /MGAS5005_orthologue="M5005_Spy1582" FT /MGAS6180_orthologue="M28_Spy1570" FT /MGAS8232_orthologue="spyM18_1928" FT /MGAS9429_orthologue="MGAS9429_Spy1587" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00263.out" FT /product="putative exonuclease" FT /systematic_id="SpyM50268" FT misc_feature 295085..295552 FT /colour=9 FT /domain="HMMPfam:PF00929;Exonuclease;2.8e-14;codon 20-175" FT /id="SpyM50268" FT /label=HMMPfam FT /note="HMMPfam hit to PF00929, Exonuclease, score 2.8e-14" FT CDS 295806..296543 FT /M1_GAS_orthologue="SPy1863" FT /MGAS10270_orthologue="MGAS10270_Spy1648" FT /MGAS315_orthologue="SpyM3_1607" FT /MGAS5005_orthologue="M5005_Spy1581" FT /MGAS6180_orthologue="M28_Spy1569" FT /MGAS8232_orthologue="spyM18_1927" FT /MGAS9429_orthologue="MGAS9429_Spy1586" FT /SSI_1_orthologue="SPs0260" FT /class="6.3.12" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00264.out" FT /product="MerR family regulatory protein" FT /systematic_id="SpyM50269" FT misc_feature 295818..295883 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1396.000, SD 3.94 at aa 7-28, sequence FT YSTGELANLAGVSIRTVQYYDQ" FT misc_feature 295821..295934 FT /colour=9 FT /domain="HMMPfam:PF00376;MerR family regulatory FT protein;2.6e-11;codon 8-45" FT /id="SpyM50269" FT /label=HMMPfam FT /note="HMMPfam hit to PF00376, MerR family regulatory FT protein, score 2.6e-11" FT misc_feature join(296226..296294,296304..296363) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="143,165" FT /coord="169,188" FT /id="SpyM50269" FT /note="2 probable transmembrane helices predicted for FT SpyM50269 by TMHMM2.0 at aa 143-165 and 169-188" FT /type="TMHMM" FT misc_feature 296475..296492 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(296600..296899) FT /M1_GAS_orthologue="SPy1862" FT /MGAS10270_orthologue="MGAS10270_Spy1647" FT /MGAS10394_orthologue="M6_Spy1591" FT /MGAS10750_orthologue="MGAS10750_Spy1638" FT /MGAS2096_orthologue="MGAS2096_Spy1605" FT /MGAS315_orthologue="SpyM3_1606" FT /MGAS5005_orthologue="M5005_Spy1580" FT /MGAS6180_orthologue="M28_Spy1568" FT /MGAS8232_orthologue="spyM18_1926" FT /MGAS9429_orthologue="MGAS9429_Spy1585" FT /SSI_1_orthologue="SPs0261" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00265.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50270" FT misc_feature complement(296603..296878) FT /colour=9 FT /domain="HMMPfam:PF02575;Uncharacterised BCR, YbaB family FT COG0718;3.3e-39;codon 8-99" FT /id="SpyM50270" FT /label=HMMPfam FT /note="HMMPfam hit to PF02575, Uncharacterised BCR, YbaB FT family COG0718, score 3.3e-39" FT misc_feature complement(296798..296821) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(297092..297466) FT /M1_GAS_orthologue="SPy1861" FT /MGAS10270_orthologue="MGAS10270_Spy1646" FT /MGAS10750_orthologue="MGAS10750_Spy1637" FT /MGAS2096_orthologue="MGAS2096_Spy1604" FT /MGAS315_orthologue="SpyM3_1605" FT /MGAS5005_orthologue="M5005_Spy1579" FT /MGAS6180_orthologue="M28_Spy1567" FT /MGAS8232_orthologue="spyM18_1925" FT /MGAS9429_orthologue="MGAS9429_Spy1584" FT /SSI_1_orthologue="SPs0262" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00266.out" FT /product="putative DNA-binding protein" FT /systematic_id="SpyM50271" FT misc_feature complement(297266..297433) FT /colour=9 FT /domain="HMMPfam:PF01381;Helix-turn-helix;5.6e-12;codon FT 12-67" FT /id="SpyM50271" FT /label=HMMPfam FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 5.6e-12" FT CDS 297636..297857 FT /MGAS10270_orthologue="MGAS10270_Spy1645" FT /MGAS10394_orthologue="M6_Spy1589" FT /MGAS10750_orthologue="MGAS10750_Spy1636" FT /MGAS2096_orthologue="MGAS2096_Spy1603" FT /MGAS315_orthologue="SpyM3_1604" FT /MGAS5005_orthologue="M5005_Spy1578" FT /MGAS6180_orthologue="M28_Spy1566" FT /MGAS8232_orthologue="spyM18_1923" FT /MGAS9429_orthologue="MGAS9429_Spy1583" FT /SSI_1_orthologue="SPs0263" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00267.out" FT /product="putative DNA-binding protein" FT /systematic_id="SpyM50272" FT misc_feature 297651..297824 FT /colour=9 FT /domain="HMMPfam:PF01381;Helix-turn-helix;5e-12;codon FT 6-63" FT /id="SpyM50272" FT /label=HMMPfam FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 5e-12" FT misc_feature 297678..297743 FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 2153.000, SD 6.52 at aa 15-36, sequence FT MTQQELSHLTGISVRTIARYEK" FT CDS complement(297937..300219) FT /EC_number="3.4.14.11" FT /M1_GAS_orthologue="SPy1858" FT /MGAS10270_orthologue="MGAS10270_Spy1644" FT /MGAS10394_orthologue="M6_Spy1588" FT /MGAS10750_orthologue="MGAS10750_Spy1635" FT /MGAS2096_orthologue="MGAS2096_Spy1602" FT /MGAS315_orthologue="pepXP" FT /MGAS5005_orthologue="M5005_Spy1577" FT /MGAS6180_orthologue="M28_Spy1565" FT /MGAS8232_orthologue="spyM18_1922" FT /MGAS9429_orthologue="MGAS9429_Spy1582" FT /SSI_1_orthologue="SPs0264" FT /class="2.1.4" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00268.out" FT /gene="pepXP" FT /product="Xaa-Pro dipeptidyl-peptidase" FT /systematic_id="SpyM50273" FT misc_feature complement(297958..299670) FT /colour=9 FT /domain="HMMPfam:PF02129;X-Pro dipeptidyl-peptidase (S15 FT family);7.5e-102;codon 184-754" FT /id="SpyM50273" FT /label=HMMPfam FT /note="HMMPfam hit to PF02129, X-Pro dipeptidyl-peptidase FT (S15 family), score 7.5e-102" FT CDS complement(300241..300960) FT /M1_GAS_orthologue="SPy1857" FT /MGAS10270_orthologue="MGAS10270_Spy1643" FT /MGAS10394_orthologue="M6_Spy1587" FT /MGAS10750_orthologue="MGAS10750_Spy1634" FT /MGAS2096_orthologue="MGAS2096_Spy1601" FT /MGAS315_orthologue="SpyM3_1602" FT /MGAS5005_orthologue="M5005_Spy1576" FT /MGAS6180_orthologue="M28_Spy1564" FT /MGAS8232_orthologue="spyM18_1921" FT /MGAS9429_orthologue="MGAS9429_Spy1581" FT /SSI_1_orthologue="SPs0265" FT /class="6.5.0" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00269.out" FT /product="Crp family regulatory protein" FT /systematic_id="SpyM50274" FT misc_feature complement(300307..300405) FT /colour=9 FT /domain="HMMPfam:PF00325;Bacterial regulatory proteins, FT crp family;7.6e-05;codon 186-218" FT /id="SpyM50274" FT /label=HMMPfam FT /note="HMMPfam hit to PF00325, Bacterial regulatory FT proteins, crp family, score 7.6e-05" FT CDS 301066..302262 FT /M1_GAS_orthologue="SPy1856" FT /MGAS10270_orthologue="MGAS10270_Spy1642" FT /MGAS10394_orthologue="M6_Spy1586" FT /MGAS10750_orthologue="MGAS10750_Spy1633" FT /MGAS2096_orthologue="MGAS2096_Spy1600" FT /MGAS315_orthologue="norA" FT /MGAS5005_orthologue="M5005_Spy1575" FT /MGAS6180_orthologue="M28_Spy1563" FT /MGAS8232_orthologue="spyM18_1920" FT /MGAS9429_orthologue="MGAS9429_Spy1580" FT /SSI_1_orthologue="SPs0266" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00270.out" FT /product="Major Facilitator Superfamily transporter" FT /systematic_id="SpyM50275" FT misc_feature 301102..302142 FT /colour=9 FT /domain="HMMPfam:PF07690;Major Facilitator FT Superfamily;1.1e-45;codon 13-359" FT /id="SpyM50275" FT /label=HMMPfam FT /note="HMMPfam hit to PF07690, Major Facilitator FT Superfamily, score 1.1e-45" FT misc_feature join(301102..301170,301198..301257,301291..301350,301378..301446,301465..301533,301561..301620,301705..301758,301786..301854,301891..301950,301963..302031,302068..302136,302179..302232) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,35" FT /coord="45,64" FT /coord="76,95" FT /coord="105,127" FT /coord="134,156" FT /coord="166,185" FT /coord="214,231" FT /coord="241,263" FT /coord="276,295" FT /coord="300,322" FT /coord="335,357" FT /coord="372,389" FT /id="SpyM50275" FT /note="12 probable transmembrane helices predicted for FT SpyM50275 by TMHMM2.0 at aa 13-35, 45-64, 76-95, 105-127, FT 134-156, 166-185, 214-231, 241-263, 276-295, 300-322, FT 335-357 and 372-389" FT /type="TMHMM" FT CDS 302448..302564 FT /MGAS10270_orthologue="MGAS10270_Spy1641" FT /MGAS2096_orthologue="MGAS2096_Spy1599" FT /MGAS5005_orthologue="M5005_Spy1574" FT /MGAS6180_orthologue="M28_Spy1562" FT /MGAS9429_orthologue="MGAS9429_Spy1579" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00271.out" FT /note="No significant database matches" FT /product="hypothetical protein" FT /systematic_id="SpyM50276" FT CDS 302734..303582 FT /M1_GAS_orthologue="SPy1854" FT /MGAS10270_orthologue="MGAS10270_Spy1640" FT /MGAS10394_orthologue="M6_Spy1585" FT /MGAS10750_orthologue="MGAS10750_Spy1632" FT /MGAS2096_orthologue="MGAS2096_Spy1598" FT /MGAS315_orthologue="glpF.2" FT /MGAS5005_orthologue="M5005_Spy1573" FT /MGAS6180_orthologue="M28_Spy1561" FT /MGAS8232_orthologue="spyM18_1917" FT /MGAS9429_orthologue="MGAS9429_Spy1578" FT /SSI_1_orthologue="SPs0267" FT /class="1.5.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00272.out" FT /gene="gla" FT /product="glycerol facilitator-aquaporin" FT /systematic_id="SpyM50277" FT misc_feature 302734..303561 FT /colour=9 FT /domain="HMMPfam:PF00230;Major intrinsic FT protein;7.3e-89;codon 1-276" FT /id="SpyM50277" FT /label=HMMPfam FT /note="HMMPfam hit to PF00230, Major intrinsic protein, FT score 7.3e-89" FT misc_feature join(302746..302814,302857..302925,302983..303051,303187..303246,303307..303375,303508..303576) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="5,27" FT /coord="42,64" FT /coord="84,106" FT /coord="152,171" FT /coord="192,214" FT /coord="259,281" FT /id="SpyM50277" FT /note="6 probable transmembrane helices predicted for FT SpyM50277 by TMHMM2.0 at aa 5-27, 42-64, 84-106, 152-171, FT 192-214 and 259-281" FT /type="TMHMM" FT misc_feature 302932..302958 FT /colour=8 FT /note="PS00221 MIP family signature." FT CDS complement(303918..304814) FT /M1_GAS_orthologue="SPy1852" FT /MGAS10270_orthologue="MGAS10270_Spy1639" FT /MGAS10394_orthologue="M6_Spy1584" FT /MGAS10750_orthologue="MGAS10750_Spy1631" FT /MGAS2096_orthologue="MGAS2096_Spy1597" FT /MGAS315_orthologue="SpyM3_1599" FT /MGAS5005_orthologue="M5005_Spy1572" FT /MGAS6180_orthologue="M28_Spy1560" FT /MGAS8232_orthologue="spyM18_1915" FT /MGAS9429_orthologue="MGAS9429_Spy1577" FT /SSI_1_orthologue="SPs0268" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00273.out" FT /note="Possible alternate translational start site" FT /product="putative membrane protein" FT /systematic_id="SpyM50278" FT misc_feature complement(join(303945..304004,304023..304091,304149..304217,304230..304298,304341..304400,304437..304496,304506..304565,304626..304694,304737..304802)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="5,26" FT /coord="41,63" FT /coord="84,103" FT /coord="107,126" FT /coord="139,158" FT /coord="173,195" FT /coord="200,222" FT /coord="242,264" FT /coord="271,290" FT /id="SpyM50278" FT /note="9 probable transmembrane helices predicted for FT SpyM50278 by TMHMM2.0 at aa 5-26, 41-63, 84-103, 107-126, FT 139-158, 173-195, 200-222, 242-264 and 271-290" FT /type="TMHMM" FT CDS 305112..305864 FT /M1_GAS_orthologue="SPy1851" FT /MGAS10270_orthologue="MGAS10270_Spy1638" FT /MGAS10394_orthologue="M6_Spy1583" FT /MGAS10750_orthologue="MGAS10750_Spy1630" FT /MGAS2096_orthologue="MGAS2096_Spy1596" FT /MGAS315_orthologue="cppA" FT /MGAS5005_orthologue="M5005_Spy1571" FT /MGAS6180_orthologue="M28_Spy1559" FT /MGAS8232_orthologue="spyM18_1914" FT /MGAS9429_orthologue="MGAS9429_Spy1576" FT /SSI_1_orthologue="SPs0269" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00274.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50279" FT CDS 305849..306799 FT /M1_GAS_orthologue="SPy1850" FT /MGAS10270_orthologue="MGAS10270_Spy1637" FT /MGAS10394_orthologue="M6_Spy1582" FT /MGAS10750_orthologue="MGAS10750_Spy1629" FT /MGAS2096_orthologue="MGAS2096_Spy1595" FT /MGAS315_orthologue="SpyM3_1597" FT /MGAS5005_orthologue="M5005_Spy1570" FT /MGAS6180_orthologue="M28_Spy1558" FT /MGAS8232_orthologue="spyM18_1913" FT /MGAS9429_orthologue="MGAS9429_Spy1575" FT /SSI_1_orthologue="SPs0270" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00275.out" FT /product="putative beta-lactamase" FT /systematic_id="SpyM50280" FT misc_feature 305873..306760 FT /colour=9 FT /domain="HMMPfam:PF00144;Beta-lactamase;7.2e-55;codon FT 9-304" FT /id="SpyM50280" FT /label=HMMPfam FT /note="HMMPfam hit to PF00144, Beta-lactamase, score FT 7.2e-55" FT misc_feature 306011..306058 FT /colour=8 FT /note="PS00146 Beta-lactamase class-A active site." FT CDS complement(306979..309306) FT /EC_number="2.3.1.54" FT /M1_GAS_orthologue="SPy1849" FT /MGAS10270_orthologue="MGAS10270_Spy1636" FT /MGAS10394_orthologue="M6_Spy1581" FT /MGAS10750_orthologue="MGAS10750_Spy1628" FT /MGAS2096_orthologue="MGAS2096_Spy1594" FT /MGAS315_orthologue="pfl" FT /MGAS5005_orthologue="M5005_Spy1569" FT /MGAS6180_orthologue="M28_Spy1557" FT /MGAS8232_orthologue="pfl" FT /MGAS9429_orthologue="MGAS9429_Spy1574" FT /SSI_1_orthologue="SPs0271" FT /class="3.5.2" FT /colour=1 FT /fasta_file="fasta/SP_new.tab.seq.00276.out" FT /gene="pfl" FT /gene="pflB" FT /product="formate acetyltransferase" FT /systematic_id="SpyM50281" FT misc_feature complement(307075..307383) FT /colour=9 FT /domain="HMMPfam:PF01228;Glycine radical;7.8e-42;codon FT 651-753" FT /id="SpyM50281" FT /label=HMMPfam FT /note="HMMPfam hit to PF01228, Glycine radical, score FT 7.8e-42" FT misc_feature complement(307084..307110) FT /colour=8 FT /note="PS00850 Glycine radical signature." FT misc_feature complement(307465..309267) FT /colour=9 FT /domain="HMMPfam:PF02901;Pyruvate formate lyase;0;codon FT 23-623" FT /id="SpyM50281" FT /label=HMMPfam FT /note="HMMPfam hit to PF02901, Pyruvate formate lyase, FT score 0" FT CDS 309515..310609 FT /EC_number="2.7.7.7" FT /M1_GAS_orthologue="SPy1846" FT /MGAS10270_orthologue="MGAS10270_Spy1635" FT /MGAS10394_orthologue="M6_Spy1580" FT /MGAS10750_orthologue="MGAS10750_Spy1627" FT /MGAS2096_orthologue="MGAS2096_Spy1593" FT /MGAS315_orthologue="dinP" FT /MGAS5005_orthologue="M5005_Spy1568" FT /MGAS6180_orthologue="M28_Spy1556" FT /MGAS8232_orthologue="dinP" FT /MGAS9429_orthologue="MGAS9429_Spy1573" FT /SSI_1_orthologue="SPs0272" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00277.out" FT /gene="dinB" FT /product="DNA polymerase IV" FT /systematic_id="SpyM50282" FT misc_feature 309563..310579 FT /colour=9 FT /domain="HMMPfam:PF00817;impB/mucB/samB FT family;1.1e-105;codon 17-355" FT /id="SpyM50282" FT /label=HMMPfam FT /note="HMMPfam hit to PF00817, impB/mucB/samB family, FT score 1.1e-105" FT CDS complement(310702..311184) FT /M1_GAS_orthologue="SPy1845" FT /MGAS10270_orthologue="MGAS10270_Spy1634" FT /MGAS10394_orthologue="M6_Spy1579" FT /MGAS10750_orthologue="MGAS10750_Spy1626" FT /MGAS2096_orthologue="MGAS2096_Spy1592" FT /MGAS315_orthologue="SpyM3_1594" FT /MGAS5005_orthologue="M5005_Spy1567" FT /MGAS6180_orthologue="M28_Spy1555" FT /MGAS8232_orthologue="spyM18_1909" FT /MGAS9429_orthologue="MGAS9429_Spy1572" FT /SSI_1_orthologue="SPs0273" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00278.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50283" FT misc_feature complement(join(310756..310824,310837..310896,310930..310998,311068..311136)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="17,39" FT /coord="63,85" FT /coord="97,116" FT /coord="121,143" FT /id="SpyM50283" FT /note="4 probable transmembrane helices predicted for FT SpyM50283 by TMHMM2.0 at aa 17-39, 63-85, 97-116 and FT 121-143" FT /type="TMHMM" FT misc_feature complement(311038..311184) FT /algorithm="SignalP 2.0 HMM" FT /anchor FT /cleavage="0.821" FT /colour=3 FT /coord="49,50" FT /id="SpyM50283" FT /note="Signal peptide predicted for SpyM50283 by SignalP FT 2.0 HMM (Signal peptide probability 0.855) with cleavage FT site probability 0.821 between residues 49 and 50" FT /signal="0.855" FT /type="signalp" FT CDS complement(311275..313728) FT /M1_GAS_orthologue="SPy1844" FT /MGAS10270_orthologue="MGAS10270_Spy1633" FT /MGAS10394_orthologue="M6_Spy1578" FT /MGAS10750_orthologue="MGAS10750_Spy1625" FT /MGAS2096_orthologue="MGAS2096_Spy1591" FT /MGAS315_orthologue="recD" FT /MGAS5005_orthologue="M5005_Spy1566" FT /MGAS6180_orthologue="M28_Spy1554" FT /MGAS8232_orthologue="spyM18_1908" FT /MGAS9429_orthologue="MGAS9429_Spy1571" FT /SSI_1_orthologue="SPs0274" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00279.out" FT /product="hypothetical protein" FT /systematic_id="SpyM50284" FT misc_feature complement(312652..312675) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(313786..314379) FT /EC_number="3.4.21.89" FT /M1_GAS_orthologue="SPy1842" FT /MGAS10270_orthologue="MGAS10270_Spy1632" FT /MGAS10394_orthologue="M6_Spy1577" FT /MGAS10750_orthologue="MGAS10750_Spy1624" FT /MGAS2096_orthologue="MGAS2096_Spy1590" FT /MGAS315_orthologue="spi" FT /MGAS5005_orthologue="M5005_Spy1565" FT /MGAS6180_orthologue="M28_Spy1553" FT /MGAS8232_orthologue="lepB" FT /MGAS9429_orthologue="MGAS9429_Spy1570" FT /SSI_1_orthologue="SPs0275" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00280.out" FT /gene="spi" FT /gene="spsB" FT /product="putative signal peptidase I" FT /systematic_id="SpyM50285" FT misc_feature complement(314089..314292) FT /colour=9 FT /domain="HMMPfam:PF00717;Peptidase S24-like;1.8e-22;codon FT 30-97" FT /id="SpyM50285" FT /label=HMMPfam FT /note="HMMPfam hit to PF00717, Peptidase S24-like, score FT 1.8e-22" FT misc_feature complement(314119..314157) FT /colour=8 FT /note="PS00760 Signal peptidases I lysine active site." FT misc_feature complement(314260..314283) FT /colour=8 FT /note="PS00501 Signal peptidases I serine active site." FT misc_feature complement(314302..314361) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="7,26" FT /id="SpyM50285" FT /note="1 probable transmembrane helix predicted for FT SpyM50285 by TMHMM2.0 at aa 7-26" FT /type="TMHMM" FT CDS complement(314390..315292) FT /EC_number="3.1.26.4" FT /M1_GAS_orthologue="SPy1841" FT /MGAS10270_orthologue="MGAS10270_Spy1631" FT /MGAS10394_orthologue="M6_Spy1576" FT /MGAS10750_orthologue="MGAS10750_Spy1623" FT /MGAS2096_orthologue="MGAS2096_Spy1589" FT /MGAS315_orthologue="SpyM3_1591" FT /MGAS5005_orthologue="M5005_Spy1564" FT /MGAS6180_orthologue="M28_Spy1552" FT /MGAS8232_orthologue="spyM18_1906" FT /MGAS9429_orthologue="MGAS9429_Spy1569" FT /SSI_1_orthologue="SPs0276" FT /class="2.1.2" FT /colour=5 FT /fasta_file="fasta/SP_new.tab.seq.00281.out" FT /product="ribonuclease HIII" FT /systematic_id="SpyM50286" FT misc_feature complement(314420..315037) FT /colour=9 FT /domain="HMMPfam:PF01351;Ribonuclease HII;2.7e-63;codon FT 86-291" FT /id="SpyM50286" FT /label=HMMPfam FT /note="HMMPfam hit to PF01351, Ribonuclease HII, score FT 2.7e-63" FT CDS 315449..315757 FT /M1_GAS_orthologue="SPy1840" FT /MGAS10270_orthologue="MGAS10270_Spy1630" FT /MGAS10394_orthologue="M6_Spy1575" FT /MGAS10750_orthologue="MGAS10750_Spy1622" FT /MGAS2096_orthologue="MGAS2096_Spy1588" FT /MGAS315_orthologue="SpyM3_1590" FT /MGAS5005_orthologue="M5005_Spy1563" FT /MGAS6180_orthologue="M28_Spy1551" FT /MGAS8232_orthologue="spyM18_1905" FT /MGAS9429_orthologue="MGAS9429_Spy1568" FT /SSI_1_orthologue="SPs0277" FT /class="0.0.0" FT /colour=8 FT /fasta_file="fasta/SP_new.tab.seq.00282.out" FT /product="hypothetical protein" FT /systematic_id="SpyM50287" FT CDS 315760..316305 FT /M1_GAS_orthologue="SPy1839" FT /MGAS10270_orthologue="MGAS10270_Spy1629" FT /MGAS10394_orthologue="M6_Spy1574" FT /MGAS10750_orthologue="MGAS10750_Spy1621" FT /MGAS2096_orthologue="MGAS2096_Spy1587" FT /MGAS315_orthologue="SpyM3_1589" FT /MGAS5005_orthologue="M5005_Spy1562" FT /MGAS6180_orthologue="M28_Spy1550" FT /MGAS8232_orthologue="spyM18_1904" FT /MGAS9429_orthologue="MGAS9429_Spy1567" FT /SSI_1_orthologue="SPs0278" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00283.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50288" FT misc_feature 315760..316281 FT /colour=9 FT /domain="HMMPfam:PF02674;Colicin V production FT protein;1.2e-63;codon 1-174" FT /id="SpyM50288" FT /label=HMMPfam FT /note="HMMPfam hit to PF02674, Colicin V production FT protein, score 1.2e-63" FT misc_feature join(315823..315891,315994..316062,316120..316188) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="22,44" FT /coord="79,101" FT /coord="121,143" FT /id="SpyM50288" FT /note="3 probable transmembrane helices predicted for FT SpyM50288 by TMHMM2.0 at aa 22-44, 79-101 and 121-143" FT /type="TMHMM" FT CDS 316454..318793 FT /M1_GAS_orthologue="SPy1837" FT /MGAS10270_orthologue="MGAS10270_Spy1628" FT /MGAS10394_orthologue="M6_Spy1573" FT /MGAS10750_orthologue="MGAS10750_Spy1620" FT /MGAS2096_orthologue="MGAS2096_Spy1586" FT /MGAS315_orthologue="mutS.1" FT /MGAS5005_orthologue="M5005_Spy1561" FT /MGAS6180_orthologue="M28_Spy1549" FT /MGAS8232_orthologue="spyM18_1903" FT /MGAS9429_orthologue="MGAS9429_Spy1566" FT /SSI_1_orthologue="SPs0279" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00284.out" FT /gene="mutS2" FT /product="putative DNA mismatch repair protein" FT /systematic_id="SpyM50289" FT misc_feature 317309..318016 FT /colour=9 FT /domain="HMMPfam:PF00488;MutS domain V;1.4e-17;codon FT 286-521" FT /id="SpyM50289" FT /label=HMMPfam FT /note="HMMPfam hit to PF00488, MutS domain V, score FT 1.4e-17" FT misc_feature 317435..317458 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 318563..318790 FT /colour=9 FT /domain="HMMPfam:PF01713;Smr domain;7.5e-38;codon 704-779" FT /id="SpyM50289" FT /label=HMMPfam FT /note="HMMPfam hit to PF01713, Smr domain, score 7.5e-38" FT CDS 318797..319297 FT /M1_GAS_orthologue="SPy1836" FT /MGAS10270_orthologue="MGAS10270_Spy1627" FT /MGAS10394_orthologue="M6_Spy1572" FT /MGAS10750_orthologue="MGAS10750_Spy1619" FT /MGAS2096_orthologue="MGAS2096_Spy1585" FT /MGAS315_orthologue="SpyM3_1587" FT /MGAS5005_orthologue="M5005_Spy1560" FT /MGAS6180_orthologue="M28_Spy1548" FT /MGAS8232_orthologue="spyM18_1902" FT /MGAS9429_orthologue="MGAS9429_Spy1565" FT /SSI_1_orthologue="SPs0280" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00285.out" FT /product="putative PAP2 superfamily protein" FT /systematic_id="SpyM50290" FT misc_feature join(318857..318916,318959..319018,319157..319225) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="21,40" FT /coord="55,74" FT /coord="121,143" FT /id="SpyM50290" FT /note="3 probable transmembrane helices predicted for FT SpyM50290 by TMHMM2.0 at aa 21-40, 55-74 and 121-143" FT /type="TMHMM" FT misc_feature 318911..319291 FT /colour=9 FT /domain="HMMPfam:PF01569;PAP2 superfamily;0.0002;codon FT 39-165" FT /id="SpyM50290" FT /label=HMMPfam FT /note="HMMPfam hit to PF01569, PAP2 superfamily, score FT 0.0002" FT misc_feature 319283..319294 FT /colour=8 FT /note="PS00294 Prenyl group binding site (CAAX box)." FT CDS 319378..319692 FT /M1_GAS_orthologue="SPy1835" FT /MGAS10270_orthologue="MGAS10270_Spy1626" FT /MGAS10394_orthologue="M6_Spy1571" FT /MGAS10750_orthologue="MGAS10750_Spy1618" FT /MGAS2096_orthologue="MGAS2096_Spy1584" FT /MGAS315_orthologue="trx.2" FT /MGAS5005_orthologue="M5005_Spy1559" FT /MGAS6180_orthologue="M28_Spy1547" FT /MGAS8232_orthologue="trxA" FT /MGAS9429_orthologue="MGAS9429_Spy1564" FT /SSI_1_orthologue="SPs0281" FT /class="3.2.15" FT /colour=7 FT /fasta_file="fasta/SP_new.tab.seq.00286.out" FT /product="putative thioredoxin" FT /systematic_id="SpyM50291" FT misc_feature 319378..319689 FT /colour=9 FT /domain="HMMPfam:PF00085;Thioredoxin;1.7e-32;codon 1-104" FT /id="SpyM50291" FT /label=HMMPfam FT /note="HMMPfam hit to PF00085, Thioredoxin, score 1.7e-32" FT misc_feature 319435..319491 FT /colour=8 FT /note="PS00194 Thioredoxin family active site." FT CDS complement(319744..320331) FT /M1_GAS_orthologue="SPy1834" FT /MGAS10270_orthologue="MGAS10270_Spy1625" FT /MGAS10750_orthologue="MGAS10750_Spy1617" FT /MGAS2096_orthologue="MGAS2096_Spy1583" FT /MGAS315_orthologue="SpyM3_1585" FT /MGAS5005_orthologue="M5005_Spy1558" FT /MGAS8232_orthologue="spyM18_1900" FT /MGAS9429_orthologue="MGAS9429_Spy1563" FT /SSI_1_orthologue="SPs0282" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00287.out" FT /product="putative DNA-binding membrane protein" FT /systematic_id="SpyM50292" FT misc_feature complement(join(319756..319824,319957..320010,320020..320073)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="87,104" FT /coord="108,125" FT /coord="170,192" FT /id="SpyM50292" FT /note="3 probable transmembrane helices predicted for FT SpyM50292 by TMHMM2.0 at aa 87-104, 108-125 and 170-192" FT /type="TMHMM" FT misc_feature complement(320149..320313) FT /colour=9 FT /domain="HMMPfam:PF01381;Helix-turn-helix;4.3e-13;codon FT 7-61" FT /id="SpyM50292" FT /label=HMMPfam FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 4.3e-13" FT misc_feature complement(320221..320286) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 2111.000, SD 6.38 at aa 16-37, sequence FT LSQEELVEKVYVSRQSISNWEN" FT CDS complement(320508..321632) FT /M1_GAS_orthologue="SPy1833" FT /MGAS10270_orthologue="MGAS10270_Spy1624" FT /MGAS10394_orthologue="M6_Spy1569" FT /MGAS10750_orthologue="MGAS10750_Spy1616" FT /MGAS2096_orthologue="MGAS2096_Spy1582" FT /MGAS315_orthologue="mutY" FT /MGAS5005_orthologue="M5005_Spy1557" FT /MGAS6180_orthologue="M28_Spy1544" FT /MGAS8232_orthologue="mutY" FT /MGAS9429_orthologue="MGAS9429_Spy1562" FT /SSI_1_orthologue="SPs0283" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00288.out" FT /note="Possible alternate upstream translational start FT site" FT /product="putative A/G-specific adenine glycosylase" FT /systematic_id="SpyM50293" FT misc_feature complement(321114..321521) FT /colour=9 FT /domain="HMMPfam:PF00730;HhH-GPD superfamily base excision FT DNA repair;1.4e-15;codon 48-183" FT /id="SpyM50293" FT /label=HMMPfam FT /note="HMMPfam hit to PF00730, HhH-GPD superfamily base FT excision DNA repair, score 1.4e-15" FT misc_feature complement(321240..321329) FT /colour=9 FT /domain="HMMPfam:PF00633;Helix-hairpin-helix FT motif;9e-08;codon 112-141" FT /id="SpyM50293" FT /label=HMMPfam FT /note="HMMPfam hit to PF00633, Helix-hairpin-helix motif, FT score 9e-08" FT CDS 321830..322123 FT /M1_GAS_orthologue="SPy1832" FT /MGAS10270_orthologue="MGAS10270_Spy1623" FT /MGAS10394_orthologue="M6_Spy1568" FT /MGAS10750_orthologue="MGAS10750_Spy1615" FT /MGAS2096_orthologue="MGAS2096_Spy1581" FT /MGAS315_orthologue="SpyM3_1583" FT /MGAS5005_orthologue="M5005_Spy1556" FT /MGAS6180_orthologue="M28_Spy1543" FT /MGAS8232_orthologue="spyM18_1898" FT /MGAS9429_orthologue="MGAS9429_Spy1561" FT /SSI_1_orthologue="SPs0284" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00289.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50294" FT misc_feature join(321866..321925,321953..322021,322034..322102) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="13,32" FT /coord="42,64" FT /coord="69,91" FT /id="SpyM50294" FT /note="3 probable transmembrane helices predicted for FT SpyM50294 by TMHMM2.0 at aa 13-32, 42-64 and 69-91" FT /type="TMHMM" FT CDS 322296..322586 FT /M1_GAS_orthologue="SPy1831" FT /MGAS10270_orthologue="MGAS10270_Spy1622" FT /MGAS10394_orthologue="M6_Spy1567" FT /MGAS10750_orthologue="MGAS10750_Spy1614" FT /MGAS2096_orthologue="MGAS2096_Spy1580" FT /MGAS315_orthologue="rpsF" FT /MGAS5005_orthologue="M5005_Spy1555" FT /MGAS6180_orthologue="M28_Spy1542" FT /MGAS8232_orthologue="rpS6" FT /MGAS9429_orthologue="MGAS9429_Spy1560" FT /SSI_1_orthologue="SPs0285" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00290.out" FT /gene="rpsF" FT /product="30S ribosomal protein S6" FT /systematic_id="SpyM50295" FT misc_feature 322299..322577 FT /colour=9 FT /domain="HMMPfam:PF01250;Ribosomal protein FT S6;3.7e-29;codon 2-94" FT /id="SpyM50295" FT /label=HMMPfam FT /note="HMMPfam hit to PF01250, Ribosomal protein S6, score FT 3.7e-29" FT CDS 322608..323099 FT /M1_GAS_orthologue="SPy1830" FT /MGAS10270_orthologue="MGAS10270_Spy1621" FT /MGAS10394_orthologue="M6_Spy1566" FT /MGAS10750_orthologue="MGAS10750_Spy1613" FT /MGAS2096_orthologue="MGAS2096_Spy1579" FT /MGAS315_orthologue="ssb.2" FT /MGAS5005_orthologue="M5005_Spy1554" FT /MGAS6180_orthologue="M28_Spy1541" FT /MGAS8232_orthologue="ssb" FT /MGAS9429_orthologue="MGAS9429_Spy1559" FT /SSI_1_orthologue="SPs0286" FT /class="2.2.03" FT /cluster="Spy_40:0033 2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00291.out" FT /gene="ssb" FT /note="Similar to SpyM50487, 72.393% identity (83.688% FT ungapped) in 163 aa overlap" FT /product="single strand binding protein (SSB)" FT /systematic_id="SpyM50296" FT misc_feature 322611..322919 FT /colour=9 FT /domain="HMMPfam:PF00436;Single-strand binding protein FT family;9e-36;codon 2-104" FT /id="SpyM50296" FT /label=HMMPfam FT /note="HMMPfam hit to PF00436, Single-strand binding FT protein family, score 9e-36" FT CDS 323264..323503 FT /M1_GAS_orthologue="SPy1829" FT /MGAS10270_orthologue="MGAS10270_Spy1620" FT /MGAS10394_orthologue="M6_Spy1565" FT /MGAS10750_orthologue="MGAS10750_Spy1612" FT /MGAS2096_orthologue="MGAS2096_Spy1578" FT /MGAS315_orthologue="rpsR" FT /MGAS5005_orthologue="M5005_Spy1553" FT /MGAS6180_orthologue="M28_Spy1540" FT /MGAS8232_orthologue="rpsR" FT /MGAS9429_orthologue="MGAS9429_Spy1558" FT /SSI_1_orthologue="SPs0287" FT /class="4.2.2" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00292.out" FT /gene="rpsR" FT /product="30S ribosomal protein S18" FT /systematic_id="SpyM50297" FT misc_feature 323321..323482 FT /colour=9 FT /domain="HMMPfam:PF01084;Ribosomal protein FT S18;5.7e-34;codon 20-73" FT /id="SpyM50297" FT /label=HMMPfam FT /note="HMMPfam hit to PF01084, Ribosomal protein S18, FT score 5.7e-34" FT misc_feature 323339..323410 FT /colour=8 FT /note="PS00057 Ribosomal protein S18 signature." FT CDS complement(323634..324290) FT /M1_GAS_orthologue="SPy1828" FT /MGAS10270_orthologue="MGAS10270_Spy1619" FT /MGAS10394_orthologue="M6_Spy1564" FT /MGAS10750_orthologue="MGAS10750_Spy1611" FT /MGAS2096_orthologue="MGAS2096_Spy1577" FT /MGAS315_orthologue="SpyM3_1579" FT /MGAS5005_orthologue="M5005_Spy1552" FT /MGAS6180_orthologue="M28_Spy1539" FT /MGAS8232_orthologue="spyM18_1894" FT /MGAS9429_orthologue="MGAS9429_Spy1557" FT /SSI_1_orthologue="SPs0288" FT /class="4.1.6" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00293.out" FT /product="putative membrane protein" FT /systematic_id="SpyM50298" FT misc_feature complement(323655..324290) FT /colour=9 FT /domain="HMMPfam:PF06570;Protein of unknown function FT (DUF1129);2.3e-154;codon 1-212" FT /id="SpyM50298" FT /label=HMMPfam FT /note="HMMPfam hit to PF06570, Protein of unknown function FT (DUF1129), score 2.3e-154" FT misc_feature complement(join(323682..323741,323769..323837,323874..323942,323970..324038)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="85,107" FT /coord="117,139" FT /coord="152,174" FT /coord="184,203" FT /id="SpyM50298" FT /note="4 probable transmembrane helices predicted for FT SpyM50298 by TMHMM2.0 at aa 85-107, 117-139, 152-174 and FT 184-203" FT /type="TMHMM" FT CDS complement(324423..325367) FT /M1_GAS_orthologue="SPy1827" FT /MGAS10270_orthologue="MGAS10270_Spy1618" FT /MGAS10394_orthologue="M6_Spy1563" FT /MGAS10750_orthologue="MGAS10750_Spy1610" FT /MGAS2096_orthologue="MGAS2096_Spy1576" FT /MGAS315_orthologue="SpyM3_1578" FT /MGAS5005_orthologue="M5005_Spy1551" FT /MGAS6180_orthologue="M28_Spy1538" FT /MGAS8232_orthologue="spyM18_1893" FT /MGAS9429_orthologue="MGAS9429_Spy1556" FT /SSI_1_orthologue="SPs0289" FT /class="7.0.0" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00294.out" FT /product="CorA-like Mg2+ transporter protein" FT /systematic_id="SpyM50299" FT misc_feature complement(324426..325307) FT /colour=9 FT /domain="HMMPfam:PF01544;CorA-like Mg2+ transporter FT protein;3.2e-07;codon 21-314" FT /id="SpyM50299" FT /label=HMMPfam FT /note="HMMPfam hit to PF01544, CorA-like Mg2+ transporter FT protein, score 3.2e-07" FT misc_feature complement(join(324444..324503,324546..324605)) FT /algorithm="TMHMM 2.0" FT /colour=0 FT /coord="255,274" FT /coord="289,308" FT /id="SpyM50299" FT /note="2 probable transmembrane helices predicted for FT SpyM50299 by TMHMM2.0 at aa 255-274 and 289-308" FT /type="TMHMM" FT CDS 325570..328398 FT /M1_GAS_orthologue="SPy1825" FT /MGAS10270_orthologue="MGAS10270_Spy1617" FT /MGAS10394_orthologue="M6_Spy1539" FT /MGAS10750_orthologue="MGAS10750_Spy1609" FT /MGAS2096_orthologue="MGAS2096_Spy1575" FT /MGAS315_orthologue="uvrA" FT /MGAS5005_orthologue="M5005_Spy1550" FT /MGAS6180_orthologue="M28_Spy1537" FT /MGAS8232_orthologue="uvrA" FT /MGAS9429_orthologue="MGAS9429_Spy1554" FT /SSI_1_orthologue="SPs0290" FT /class="2.2.03" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00295.out" FT /gene="uvrA" FT /product="UvrABC system protein A (UvrA protein)" FT /systematic_id="SpyM50300" FT misc_feature 325663..325686 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 326782..326799 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 327034..327078 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT misc_feature 327469..328284 FT /colour=9 FT /domain="HMMPfam:PF00005;ABC transporter;2.3e-31;codon FT 644-915" FT /id="SpyM50300" FT /label=HMMPfam FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.3e-31" FT misc_feature 327490..327513 FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 327856..327873 FT /colour=8 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 328057..328101 FT /colour=8 FT /note="PS00211 ABC transporters family signature." FT CDS 328514..329587 FT /EC_number="3.4.13.9" FT /M1_GAS_orthologue="SPy1824" FT /MGAS10270_orthologue="MGAS10270_Spy1616" FT /MGAS10394_orthologue="M6_Spy1538" FT /MGAS10750_orthologue="MGAS10750_Spy1608" FT /MGAS2096_orthologue="MGAS2096_Spy1574" FT /MGAS315_orthologue="pepP" FT /MGAS5005_orthologue="M5005_Spy1549" FT /MGAS6180_orthologue="M28_Spy1536" FT /MGAS8232_orthologue="pepP" FT /MGAS9429_orthologue="MGAS9429_Spy1553" FT /SSI_1_orthologue="SPs0291" FT /class="7.0.0" FT /cluster="Spy_40:0034 2" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00296.out" FT /product="putative metallopeptidase" FT /systematic_id="SpyM50301" FT misc_feature 328925..329560 FT /colour=9 FT /domain="HMMPfam:PF00557;metallopeptidase family FT M24;9.2e-61;codon 138-349" FT /id="SpyM50301" FT /label=HMMPfam FT /note="HMMPfam hit to PF00557, metallopeptidase family FT M24, score 9.2e-61" FT misc_feature 329375..329413 FT /colour=8 FT /note="PS00491 Aminopeptidase P and proline dipeptidase FT signature." FT CDS 329622..330083 FT /M1_GAS_orthologue="SPy1823" FT /MGAS10270_orthologue="MGAS10270_Spy1615" FT /MGAS10394_orthologue="M6_Spy1537" FT /MGAS10750_orthologue="MGAS10750_Spy1607" FT /MGAS2096_orthologue="MGAS2096_Spy1573" FT /MGAS315_orthologue="comEB" FT /MGAS5005_orthologue="M5005_Spy1548" FT /MGAS6180_orthologue="M28_Spy1535" FT /MGAS8232_orthologue="spyM18_1888" FT /MGAS9429_orthologue="MGAS9429_Spy1552" FT /SSI_1_orthologue="SPs0292" FT /class="7.0.0" FT /colour=13 FT /fasta_file="fasta/SP_new.tab.seq.00297.out" FT /product="putative cytidine and deoxycytidylate deaminase" FT /systematic_id="SpyM50302" FT misc_feature 329637..329975 FT /colour=9 FT /domain="HMMPfam:PF00383;Cytidine and deoxycytidylate FT deaminase;3.9e-33;codon 6-118" FT /id="SpyM50302" FT /label=HMMPfam FT /note="HMMPfam hit to PF00383, Cytidine and FT deoxycytidylate deaminase, score 3.9e-33" FT misc_feature 329832..329939 FT /colour=8 FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS 330179..330736 FT /M1_GAS_orthologue="SPy1821" FT /MGAS10270_orthologue="MGAS10270_Spy1614" FT /MGAS10394_orthologue="M6_Spy1536" FT /MGAS10750_orthologue="MGAS10750_Spy1606" FT /MGAS2096_orthologue="MGAS2096_Spy1572" FT /MGAS315_orthologue="efp" FT /MGAS5005_orthologue="M5005_Spy1547" FT /MGAS6180_orthologue="M28_Spy1534" FT /MGAS8232_orthologue="efp" FT /MGAS9429_orthologue="MGAS9429_Spy1551" FT /SSI_1_orthologue="SPs0293" FT /class="2.2.10" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00298.out" FT /gene="efp" FT /product="elongation factor P (EF-P)" FT /systematic_id="SpyM50303" FT misc_feature 330179..330733 FT /colour=9 FT /domain="HMMPfam:PF01132;Elongation factor P FT (EF-P);2.5e-76;codon 1-185" FT /id="SpyM50303" FT /label=HMMPfam FT /note="HMMPfam hit to PF01132, Elongation factor P (EF-P), FT score 2.5e-76" FT misc_feature 330626..330685 FT /colour=8 FT /note="PS01275 Elongation factor P signature." FT CDS 330782..331171 FT /M1_GAS_orthologue="SPy1820" FT /MGAS10270_orthologue="MGAS10270_Spy1613" FT /MGAS10394_orthologue="M6_Spy1535" FT /MGAS10750_orthologue="MGAS10750_Spy1605" FT /MGAS2096_orthologue="MGAS2096_Spy1571" FT /MGAS315_orthologue="SpyM3_1573" FT /MGAS5005_orthologue="M5005_Spy1546" FT /MGAS6180_orthologue="M28_Spy1533" FT /MGAS8232_orthologue="spyM18_1886" FT /MGAS9429_orthologue="MGAS9429_Spy1550" FT /SSI_1_orthologue="SPs0294" FT /class="0.0.2" FT /colour=10 FT /fasta_file="fasta/SP_new.tab.seq.00299.out" FT /product="conserved hypothetical protein" FT /systematic_id="SpyM50304" FT misc_feature 330794..331108 FT /colour=9 FT /domain="HMMPfam:PF03780;Protein of unknown function FT (DUF322);4.5e-45;codon 5-109" FT /id="SpyM50304" FT /label=HMMPfam FT /note="HMMPfam hit to PF03780, Protein of unknown function FT (DUF322), score 4.5e-45" FT CDS 331164..331616 FT /M1_GAS_orthologue="SPy1818" FT /MGAS10270_orthologue="MGAS10270_Spy1612" FT /MGAS10394_orthologue="M6_Spy1534" FT /MGAS10750_orthologue="MGAS10750_Spy1604" FT /MGAS2096_orthologue="MGAS2096_Spy1570" FT /MGAS315_orthologue="nusB" FT /MGAS5005_orthologue="M5005_Spy1545" FT /MGAS6180_orthologue="M28_Spy1532" FT /MGAS8232_orthologue="spyM18_1884" FT /MGAS9429_orthologue="MGAS9429_Spy1549" FT /SSI_1_orthologue="SPs0295" FT /class="2.2.11" FT /colour=2 FT /fasta_file="fasta/SP_new.tab.seq.00300.out" FT /gene="nusB" FT /product="N utilization substance protein B homolog (NusB FT protein)" FT /systematic_id="SpyM50305" FT misc_feature 331191..331595 FT /colour=9 FT /domain="HMMPfam:PF01029;NusB family;9.2e-31;codon 10-144" FT /id="SpyM50305" FT /label=HMMPfam FT /note="HMMPfam hit to PF01029, NusB family, score 9.2e-31" FT CDS complement(331757..332722) FT /M1_GAS_orthologue="SPy1817" FT /MGAS10270_orthologue="MGAS10270_Spy1611" FT /MGAS10394_orthologue="M6_Spy1533" FT /MGAS10750_orthologue="MGAS10750_Spy1603" FT /MGAS2096_orthologue="MGAS2096_Spy1569" FT /MGAS315_orthologue="scrR" FT /MGAS5005_orthologue="M5005_Spy1544" FT /MGAS6180_orthologue="M28_Spy1531" FT /MGAS8232_orthologue="spyM18_1883" FT /MGAS9429_orthologue="MGAS9429_Spy1548" FT /SSI_1_orthologue="SPs0296" FT /class="6.3.05" FT /colour=9 FT /fasta_file="fasta/SP_new.tab.seq.00301.out" FT /gene="scrR" FT /product="putative sucrose operon repressor" FT /systematic_id="SpyM50306" FT misc_feature complement(331766..332545) FT /colour=9 FT /domain="HMMPfam:PF00532;Periplasmic binding proteins and FT sugar b;1.2e-05;codon 60-319" FT /id="SpyM50306" FT /label=HMMPfam FT /note="HMMPfam hit to PF00532, Periplasmic binding FT proteins and sugar b, score 1.2e-05" FT misc_feature complement(332546..332569) FT /colour=8 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(332639..332716) FT /colour=9 FT /domain="HMMPfam:PF00356;Bacterial regulatory proteins, FT lacI fami;1.1e-10;codon 3-28" FT /id="SpyM50306" FT /label=HMMPfam FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI fami, score 1.1e-10" FT misc_feature complement(332651..332716) FT /colour=2 FT /note="Predicted helix-turn-helix motif with score FT 1960.000, SD 5.86 at aa 3-24, sequence FT AKLTDVAALAGVSPTTVSRVIN" FT misc_feature complement(332654..332710) FT /colour=8 FT /note="PS00356 Bacterial regulatory proteins, lacI family FT signature." FT CDS complement(332727..334166) FT /EC_number="3.2.1.26" FT /M1_GAS_orthologue="SPy1816" FT /MGAS10270_orthologue="MGAS10270_Spy1610" FT /MGAS10394_orthologue="M6_Spy1532" FT /MGAS10750_orthologue="MGAS10750_Spy1602" FT /MGAS2096_orthologue="MGAS2096_Spy1568" FT /MGAS315_orthologue="scrB" FT /MGAS5005_orthologue="M5005_Spy1543" FT /MGAS6180_orthologue="M28_Spy1530" FT /MGAS8232_orthologue="spyM18_1882" FT /MGAS9429_orthologue="MGAS9429_Spy1547" FT /SSI_1_orthologue="SPs0297" FT /class="3.4.3" FT /colour=6 FT /fasta_file="fasta/SP_new.tab.seq.00302.out" FT /gene="scrB" FT /product="putative sucrose-6-phosphate hydrolase" FT /systematic_id="SpyM50307" FT misc_feature complement(332829..334058) FT /colour=9 FT /domain="HMMPfam:PF00251;Glycosyl hydrolases FT family;9.1e-153;codon 38-447" FT /id="SpyM50307" FT /label=HMMPfam FT /note="HMMPfam hit to PF00251, Glycosyl hydrolases family, FT score 9.1e-153" FT misc_feature complement(334017..334058) FT /colour=8 FT /note="PS00609 Glycosyl hydrolases family 32 active site." FT CDS 334408..336291 FT /EC_number="2.7.1.69" FT /M1_GAS_orthologue="SPy1815" FT /MGAS10270_orthologue="MGAS10270_Spy1609" FT /MGAS10394_orthologue="M6_Spy1531" FT /MGAS10750_orthologue="MGAS10750_Spy1601" FT /MGAS2096_orthologue="MGAS2096_Spy1567" FT /MGAS315_orthologue="scrA" FT /MGAS5005_orthologue="M5005_Spy1542" FT /MGAS6180_orthologue="M28_Spy1529" FT /MGAS8232_orthologue="spyM18_1881" FT /MGAS9429_orthologue="MGAS9429_Spy1546" FT /SSI_1_orthologue="SPs0298" FT /class="1.5.3" FT /cluster="Spy_40:0014 3" FT /colour=3 FT /fasta_file="fasta/SP_new.tab.seq.00303.out" FT /gene="scrA" FT /product="putative sucrose-specific phosphotransferase FT system (PTS), IIABC component" FT /systematic_id="SpyM50308" FT misc_feature 334426..334530 FT /colour=9 FT /domain="HMMPfam:PF00367;phosphotransferase system, FT EIIB;8e-19;codon 7-41" FT /id="SpyM50308" FT /label=HMMPfam FT /note="HMMPfam hit to PF00367, phosphotransferase system, FT EIIB, score 8e-19" FT misc_feature 334462..334515 FT /colour=8 FT /note="PS01035 PTS EIIB domains cysteine phosphorylation FT site signature." FT misc_feature 334732..335604 FT /colour=9 FT /domain="HMMPfam:PF02378;Phosphotransferase system, FT EIIC;1e-45;codon 109-399" FT /id="SpyM50308" FT /label=HMMPfam FT /note="HMMPfam hit to PF02378, Phosphotransferase system, FT EIIC, score 1e-45" FT misc_feature join(334738..334803,334861..334929,334948..335016,335044..335112,335167..335235,335278..335346,335407.