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| Note: mitochondrial genome not included in statistics, except when referred to directly |
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| UPDATED 05-06-08 |
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| Genome Structure and Organisation |
| Genome size (sequenced/total) |
12.5 Mb (~14.1 Mb) |
| Chromosome number |
3 |
| Chromosome size range |
3.5 - 5.7 Mb |
| Centromere size |
35 - 110 Kb |
| Gene density (mean bp/gene) |
2508 bp |
| Mean gene length |
1416 bp |
| Overall GC content |
36.0% |
| GC content in protein coding sequence |
39.6% |
| GC content in intergenic sequence |
30.6% |
| Replication origins |
~400 |
| Replication origin sizes |
0.5 - 1 Kb |
| Mitochondrial genome |
20 Kb (11 genes) |
| Gene Number |
| Gene number (protein coding) |
5027 |
| Gene number (excluding dubious) |
4970 |
| tRNA genes |
196 |
| 5.8S, 18S, 26S rRNA genes |
100-120 tandem repeats (2 arrays) |
| 5S rRNA genes |
31 dispersed genes |
| Small nuclear RNA (snRNA) genes |
7 |
| Small nucleolar RNA (snoRNA) genes |
52 |
| Other non coding RNA genes (published) |
5 |
| Other non coding RNA genes (predicted) |
490 |
| Pseudogenes (excluding wtf) |
42 |
| Gene Structure |
| Genes with introns (excludes introns in UTRs) |
2298 (45.9%) |
| Intron number (excludes introns in UTRs) |
4793 |
| Mean intron length |
81 bp (27 bp - 817 bp) |
| Mean UTR length (3') (from PMID:18488015) |
152 bp |
| Mean UTR length (5') (from PMID:18488015) |
169 bp |
| Intergenic Distance (between protein coding genes) |
| Intergene regions (mean/median)(from PMID:11859360) |
952 bp/423 bp |
| Mean distance between divergent genes (from PMID:11859360) |
1341 bp |
| Mean distance between tandem genes (from PMID:11859360) |
955 bp |
| Mean distance between convergent genes (from PMID:11859360) |
558 bp |
| Transposon Related |
| Tf type transposons |
13 (2 pseudo) |
| Long terminal repeats (LTRs) solo, intact |
274 |
| wtf elements (with tf2 type LTRs) |
25 (10 pseudo) |
